Array 1 5964-6923 **** Predicted by CRISPRDetect 2.4 ***
>NZ_FZZG01000013.1 Neisseria meningitidis strain Neisseria meningitidis isolate R276, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ==================================== ============================== ==================
5964 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG
6030 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT
6096 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG
6162 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG
6228 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT
6294 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC
6360 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA
6426 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA
6492 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT
6558 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT
6624 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC
6690 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT
6756 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG
6822 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA
6888 36 100.0 0 .................................... |
========== ====== ====== ====== ==================================== ============================== ==================
15 36 99.4 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT
# Questionable array : NO Score: 6.23
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT]
# Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37
# Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [4.5,0.68 Confidence: HIGH]
# Array family : NA
//