Array 1 4270-1312 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAXA01000283.1 Frankia soli strain NRRL B-16219 contig_93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4269 29 100.0 32 ............................. GACCCTGACCACCTCCCTGACCGCCGTCGCCG 4208 29 96.6 32 ............................G GCGGACGTGGTCGACGGACTGTTCTCGCTCGG 4147 29 96.6 32 ............................G GTCCTGTGGTGGACCCTGAACCGTGCGACGGC 4086 29 96.6 32 ............................T GTGGTGCCGAGGAGGATCCCTCGGCGGCTGGC 4025 29 96.6 32 ............................T TCCTGTGACAGACCCGGGAAGGCATCCCGTGA 3964 29 96.6 32 ............................T GCGTGACCCGAAATTCCCGAAGGGGCAGGGAG 3903 29 96.6 32 ............................G ACGATGGTCGAGCAGGGCAACCGCGACGTCCT 3842 29 100.0 33 ............................. GACCACACCGGCGGCCGCCCCCGCCCCGAGCTG 3780 29 100.0 33 ............................. CGCGAGGTGCGCGGCTCGTCGTGCCCGGCCGCG 3718 29 100.0 32 ............................. GAGGGCACCGGCGCCGGGCAGACCGGCTGGGC 3657 29 96.6 32 ............................G GTGAGGTGGACGGCTACGCCGAGCTCGACAGC 3596 29 96.6 32 ............................G GTGAGGTGGACGGCTACGCCGAGCTCGACAGC 3535 29 96.6 32 ...............T............. GCGCGGGCGATCTTGTCGACGATGCCGGCGTT 3474 29 100.0 32 ............................. GCCTCGACCGTCTCGGGTGGCGCGTTCATCCG 3413 29 100.0 32 ............................. GGCAAGAGCTGGGGCGTCCCGGTCCTCGACAT 3352 29 100.0 32 ............................. AGCCTGCCCACCTCATCCCACTGCGCCCGCGA 3291 29 96.6 32 ............................G AGTCAGCCGCTCCTACGCACAGCGCATCGGCG 3230 29 100.0 32 ............................. GACGCGGAGTCCATGAGGGACGCGAGCGCGGG 3169 29 93.1 32 ..T.........................T ACAGGGCCGCCGCCAGGCCGCAGGCGTACGGG 3108 29 96.6 32 ............................T GGACGATGAATCTTGAGCCCAAGCCCGGACAG 3047 29 100.0 32 ............................. CGGGTCCACATCCCCGACCCACCCGCCGAGGT 2986 29 100.0 32 ............................. GGCGACGAGACGGGCGCGGTCAGGGTCAGCGT 2925 29 96.6 32 ............................G CGCTGGGTGGACATGGATTTTCCGCACAAGCG 2864 29 100.0 32 ............................. CCTTCGGAGGCCGGCGAGTCGGCCGTGGACGC 2803 29 100.0 32 ............................. AGGGCCGTGAGATCCCGCCTGGGGATCTCGTC 2742 29 96.6 32 ............................G GTCGTCGGCCTGGAGATGGACCCGACCACCCT 2681 29 96.6 32 ..........T.................. GTCTCGAGGGCGGCCGTCCAGCGGTGGCCTTC 2620 29 100.0 32 ............................. GACCAGTAGGCCGTCCAGCCCCATCCGAGTGG 2559 29 100.0 32 ............................. GCACGTTCGAGGTCGTCGGCACGGGCCACCCC 2498 29 96.6 32 ............................T CTGACCTACCAGGGGGGCGCGCCCCCGGGAGG 2437 29 100.0 32 ............................. GCAAGGTCCGCGCAGCGCGCCGCCTCGAGGCC 2376 29 96.6 32 ............................T AGCCTGGATCAACAATCACGGCACTGCGCTTG 2315 29 96.6 32 ............................G CGCATCGCCCTCGGGCGGGTGCCGATCGGGTA 2254 29 100.0 32 ............................. CTGTACCGGTCCGCCGCGGACACGCTCAAGAC 2193 29 93.1 32 ..................A.........G GTAGGCGTAGGCGTACCAGGGGAGGGCGACAG 2132 29 96.6 32 ............................G CTCGGCCAGGCCCGCCGGACGCTGCTGAAACG 2071 29 96.6 32 ............................G TGGTAGGCGCCCCGGGCCAGGCCGGCCCGGCC 2010 29 96.6 32 ............................T CCGGCGACGATGCCGCTCTACCTGAAGCGGCG 1949 29 100.0 32 ............................. CCCTACCGCGACCGTCTGCTGGGGATCGGGTT 1888 29 100.0 32 ............................. GAGCAGCTCGCCAGGTAGGTGCTGCCCAGCGT 1827 29 100.0 32 ............................. GGATCCTGATCGACCCCGCAGACCAGGTTCGC 1766 29 96.6 32 ............................A GAACGGCGCAGGCCGGGCCGACGAGGTCAACG 1705 29 100.0 32 ............................. GTCGTTGGGAGATAGGCGAATGCAGGGTCAGA 1644 29 100.0 32 ............................. CTGACCTGACGTTCCGCGATCCCCGCCGCGAT 1583 29 100.0 32 ............................. GACCCCAGGGCGGTCCCGCAGGCCCTCCCGCC 1522 29 100.0 32 ............................. GCGCGGTGCCGGACGTGCGCCGGAGTCCTCTC 1461 29 96.6 32 ............................T CGCTCCGGCTACCGGATCGAGCGCCGCCTGTA 1400 29 100.0 32 ............................. GAGCCGGGCAGGCTGACGATCGCCGTGGGGAT 1339 28 86.2 0 .....................-...CG.A | ========== ====== ====== ====== ============================= ================================= ================== 49 29 97.9 32 GTCGTCCCCGCACGCGCGGGGATCTTCCC # Left flank : GCCCGCATCGTCCACGACATCAAAGACCTCCTCCTCGACAAAGACACCCCCGACCATGACGACGACTCCCTCCACCTCTGGGACGAGATCGACGGCCACGTCCCCGGCGGCGTCAACTGGGCCGCCGACCTCGCAGACCAATGGGACGACACCACCATCGTCGGCATCACCGGACCCGACACCGACACCGAAACGCCGCCCTGGTGACCGTCATCGTCCTCATCGCCGTCGCCGAGGGCCTACGTGGCCACCTCACCCGGTGGATGATCGAGATCGCCGCCGGGGTCTTCGTCGGGAACCCCAGCGCCCGGGTCCGTGACCGCGTCTGGACCGTGCTCGCCCAGCGCGTCGGAGACGGCCAAGCCGTCATGATCGAACCTGCGGACAACGAGCAGGGCTGGGCCGTACGCACCGCCGGCCGTGACCGCGGCTACCCGATCGACTACGACGGACTGATACTGTTCGCCCGCCCACGCCGGTAAAACCCCAGCTCAGCAAGG # Right flank : AGGCGGCCGACGCTACCGGACGATGCCAGCCACGTCTGTCAACGTCGTTCCGGCACTGGCGGGGCAGCGCGAGGACGACTTGTAAATCGTGGTTTCGAGGTTCGACTGACGTCACCCCACGCTCGTACGACCTTTGCGGCCTGCGGCGGCGGGCGCGATGTGGTGTGCACCAGCCGACCATGAAGGAGAATTATCAGTCGTCCCCGCGCTACCCCCACGTGTGCGGGACGATCGGGGTGCCAGGGGCACCCCCGCGGATCAGGAGGAGAGTCCTGCGGATGTGGGGACGACTTGGCCGCTCTCGCCGAAACGTTGGACTGTATCGAGCCCGGGGTGGGCAGTCCGTGTACCGCTGGCGGCCCGACGACAGCGGCGCGGACTGCCCGACCGACGCCGAGTCGACGTGTACGGCGGCGTCGCCCGCATCCCGTAACACCGCAGTCCCTGGCGTGGTCTTCACGCCCATCGAGGAGAACGCCTTCATCAGCGCCATCGACGAC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.71, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13793-15225 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAXA01000283.1 Frankia soli strain NRRL B-16219 contig_93, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13793 29 96.6 32 ............................T CGGACGGTTGAGGTCGCCGAGGTCGCCGAGGG 13854 29 100.0 33 ............................. CCGGTCATCTACACCGACACCCACCGCAACGCG 13916 29 100.0 32 ............................. TGACCGTCCGCGCCGGCGAGGCCATCGAACGG 13977 29 100.0 32 ............................. TGTCGTCGCTGTGGCCCTGGACGTCGACGTCG 14038 29 96.6 32 ............................G AGCTTCAGGCGTGGTACGCGAACCGGATAGCC 14099 29 96.6 32 ............................T CGCGGAGACACCGACCGTGGCCTTGGCCGCGT 14160 29 100.0 32 ............................. CGTACGACCAGTCCGTACATCGCCCCGATCGT 14221 29 100.0 32 ............................. GTGGACCTGCAGGTCGGCCAGGCTGTCGTGAT 14282 29 100.0 32 ............................. GCCTCCGGGTCGGTCGCCCTGACCTGCCGCTC 14343 29 100.0 32 ............................. GATGGCCCGGGGAGGTGACATCTCCCCGGGCC 14404 29 100.0 32 ............................. GCTGGCACGGCGCGGATCGTGGCCGGCTCAGC 14465 29 96.6 32 ............................G TCCGAGACCAGGGGCCGCGCAGTGCCCTCTAG 14526 29 100.0 32 ............................. GTGGAATCCCCGGGATGGTGCGGCCAGGTGGC 14587 29 96.6 32 ............................T CGACTCGTGGCGGCACAGCCGATCCCCCGCGA 14648 29 100.0 32 ............................. TCGGCGGGCACGTCCAGATAGACGGTGATCTC 14709 29 96.6 32 ............................G CGCAAGGCGGTCGTGGAGGTGGCCACCACGGA 14770 29 100.0 32 ............................. TCTCCCGACTCGATCCGAGCGCGCAGGTCATC 14831 29 100.0 32 ............................. CTGCCCGCGCTCGCCGAATCGGACGATGACCT 14892 29 96.6 32 ............................G CCCTTGCGGCGGGTGATCGCGTCTGCCGTCTG 14953 29 100.0 32 ............................. GCCCTTCTCTCAGGCTTTCCGGAAACCGTCCA 15014 29 96.6 32 .............A............... ACTGCGGCGCCGACCGCCGCCGAGATCAACGC 15075 29 100.0 32 ............................. GCCATCTCGGTCCTCCCTTCTTCGATGGGTGT 15136 29 100.0 32 ............................. TGGGCGATGCCCTGCGCGCCAGGTTCGCCGTT 15197 29 89.7 0 ..........................TGT | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.4 32 GTCGTCCCCGCACGCGCGGGGATCTTCCC # Left flank : CCTGCCGAGGAGACAGATTCCGCCAGTCCAAACCCGCCGCGCGCACCCGACCAGCCAGCCCATCATCTTTCATCTGAAAAGCCGGAGTTGCCTTACCCACATCATGCAGACCACACAGCGAGACGAACAAGGAACGGCCACGACCATCGCTGCACCCGTCCAGGATCCGCCGCGACGACGCCGACAGATACCTCTCCCAGACCAGCTCACCCACCGCCGCCGTGTCCAACAAATGCCCCAGCAGCAGATGCATCGAACCCTGCGGATCCGACTTCGGCTTCGACTTCCCCCACAGCACACCCAACGCCACATCGCGCATAAGACCCCCCGAGCCCGGCACACGAGCAGGCCATCAAACCACCAGCAGCCAACGGCCAGACCAGCAGGCCCCGCCCGACACCGTCAACCACCACACCAGCCCGGCCAGACACCACCCGCCCGCTCCGACGGGACTGATAAATTTGGGCCCCATCGAGCAGTAAAGCCGCAGGTCAGCAAGC # Right flank : TCGGACACGCGCGAGGATCTTCCCCTCCAGGTCCGCGCCGCTTCGTTCAGGCAGGGTGTCGCCCCCGCCGCACGTGGGTGGCGCGAGGGCGACTGGTAATAGCGTCTTTCGTGGTCGGCTGGGTGCGGGCGGTAGGGTGATCGTGCCGTAGGGGCACGTGTGGACTGGGGGGTCCGATGCCAACGACCTACTACCTCGCCTGGTGGAACCTCGAGAACCTCTTCGACGAGGAGAACTCACCCCGGCGGACCGAGAAACTCGCCCGCGCTCTCGGTGACGACCTCGCCGGCTGGACGCCGCAGCTCCGGGACCGCAAAGTCTCTCAGTTGGCGTCGGTGATCGCGCAGATGAACGGCGGTGCGGGCCCGGACCTGCTCGGGGTGTGCGAGGTGGAGAACCGGTTCGTCCTCGAGCTCCTCGCCGCGGCGGTCGCCGACCGGCTGGGTGGCCGCCGTTACGAGATCGTGCACGCCGACACCGGCGATGCCCGCGGGATCGAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //