Array 1 179186-180739 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDAE01000012.1 Escherichia coli strain VREC0573, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179186 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 179247 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 179308 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 179369 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 179430 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 179491 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 179552 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 179613 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 179674 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 179735 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 179796 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 179857 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 179918 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 179979 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 180040 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 180101 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 180162 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 180223 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 180284 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 180345 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 180406 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 180467 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 180528 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 180589 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 180650 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 180711 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15357-16604 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDAE01000017.1 Escherichia coli strain VREC0573, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15357 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 15418 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 15479 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 15540 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 15601 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 15662 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 15723 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 15784 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 15845 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 15906 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 15967 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAATCGTTATCCCC 16028 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 16089 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 16150 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 16211 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 16272 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 16332 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 16393 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 16454 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 16515 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 16576 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //