Array 1 21991-32377 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCB01000003.1 Hydrococcus rivularis NIES-593 NIES-593_Scaffold_3, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================== ================== 21991 36 100.0 43 .................................... TTGAGATTGCCGGTGCGATGAATGCGGGTCAAACCAAAATCAG 22070 36 100.0 39 .................................... TTCTCCACTGACTAGTGATGGTGGTTATTTCTACAGCGC 22145 36 100.0 39 .................................... TTACCGGCGCGGGCATATCCGCCAATATAAATTAGTTTA 22220 36 100.0 37 .................................... CGAGATCATCACGAAGCGGCGCGGCTCGACTCCCGCG 22293 36 100.0 35 .................................... GTGAATAGAGCGGTGGAATTCTGATTACGATTCTC 22364 36 100.0 36 .................................... GTGCTGTCGCTCGGGATGGCAGCCGGCGCATATCTG 22436 36 100.0 35 .................................... ATCAAGCTTACTCATGCCTTAAGTATCAACCTATA 22507 36 100.0 45 .................................... GTGGATAAAGAAGTAACACTCTGCTGAGTGGCTTCTGCTATCGCT 22588 36 100.0 40 .................................... TTAAACTAGCTCCAGTACAAGCAGAAAGAGTTCGGTCAGG 22664 36 100.0 37 .................................... CCATTAACATAAATTGAAATAAGGTTCTTAGTTCTTC 22737 36 100.0 39 .................................... GCAAAAGAAATACTCAAGAGATTGAGTAGTCATACTCAA 22812 36 100.0 40 .................................... TTAGAGCAAGTGGATATCATTAGCCGTAATTTCGGGGGAT 22888 36 100.0 37 .................................... GTCGTTATTACAACAACAACGCGACGCTGAATACCAA 22961 36 100.0 38 .................................... AGTAGGTTATACACTGTTGGGTTGAGTAGAGGTGTTTA 23035 36 100.0 39 .................................... TATACCTCGTGTATAACAATGATAACGACTGGGACTACC 23110 36 100.0 54 .................................... TCAACCCTATAAGTTAGATAATTGTCTGACTAGATTACATAGCTATCTAGTCAA 23200 36 100.0 40 .................................... AAGAGTCCCCCGCTAAGGGGACGACCTCTACTAGGAATTA 23276 36 100.0 38 .................................... CCAACACCACGAGATAGTGCGCTGGCTAATCTAAAGGC 23350 36 100.0 36 .................................... CTAGCAAAAACAACTCGGTCAGGTTGACTTTCATTG 23422 36 100.0 38 .................................... CGAACACTGTTTTTCTCCTTAATTCTTTTTTTTGCTTA 23496 36 100.0 37 .................................... AGTAATTCAGCCTGTAGTAGATACGGTAGTACGCGGA 23569 36 100.0 42 .................................... TCGGTCATTGGTATTGAATTCCACGATCCAAATAAGAACTAC 23647 36 100.0 40 .................................... CCATTCACGTAATATCCTGCTCGGCGTAGAATGTAGGATA 23723 36 100.0 42 .................................... TCAATAGAAAAAAGGAAATTTTCTATTATTGTTTCTTATTGG 23801 36 100.0 38 .................................... ACTGATCTTGTGATTGACCAAAAACCATCGACGATGGG 23875 36 100.0 38 .................................... CCTTTTTCCCGTTAGAGCTTAGCGACACTGTAACTATT 23949 36 100.0 40 .................................... TGAAATACACAATTCTGTTCCCAATAACAAAACAATACAA 24025 36 100.0 43 .................................... GATGTAAGTATTTGACAAGAGTCAGCGTTGAAACCTCATACTC 24104 36 100.0 39 .................................... TAGTAGCGCGTACTCCGAAGGTGTAACTCGCGCCGATAC 24179 36 100.0 37 .................................... TTGAGGTATTCCCTTATGTAGGGGTTTTCCAAGCTCT 24252 36 100.0 41 .................................... GTCGGAATCAATGTGGTAACGTTACGCGATTCTCCATTCAA 24329 36 100.0 42 .................................... TCGCGTATCCGATTAATCACTGGATTATCAAATAGTGAATCA 24407 36 100.0 37 .................................... TCGACCGTAGAAGGCGCGTTAGTGACGACTGCGTCTG 24480 36 100.0 37 .................................... GTAGGAGATAGACCCTACCCACTCCGCCATATCCCTG 24553 36 100.0 42 .................................... ATGTTTATCGGTAAACTGCTTGATTAAATCCATACTCTATCC 24631 36 100.0 37 .................................... CGGGTTAGTTCATATAGGAGTGTTTTAAGTTCTTCCC 24704 36 100.0 36 .................................... GAGTCTCCAATAGTAGGTAGAACGTTCGGTAGTGAG 24776 36 100.0 39 .................................... AGTGTGCTCCTAATTTGAGAGTGACTTCCGCGTCTAGAC 24851 36 100.0 37 .................................... ATAGAGACAACTCCTGTTCGATTTGGAACTCGACAAA 24924 36 100.0 41 .................................... TCACAACCTACTCAATCGAGTAGGTTTTTTTTGTTACCTAG 25001 36 100.0 38 .................................... CTATGCAACTGGGCAACGCGTTCTTTGGTAATCCCCAA 25075 36 100.0 38 .................................... AAAAAATGATATTGGGGATAGATGCTGAACAATCTTGA 25149 36 100.0 39 .................................... CTGGCGAGAGCTTTCGCCAGTAATTCTGCGGTTGCGTTA 25224 36 100.0 46 .................................... AATCCTGTGATCCAAATCACACCCCGTACTATGGAGTAATACCAAA 25306 36 100.0 36 .................................... TATGCGGGCGGTGATATGTACGGTACTTTTAGCACC 25378 36 100.0 36 .................................... TTGGGAGAAGCACAATCTTTTTCCATTTTTTGGCGA 25450 36 100.0 41 .................................... GATACTACATCTTGTAGTGTTGCGCCCTTTTTCCATGAATA 25527 36 100.0 40 .................................... GTTGGTTTGTTTATTTCTATATTTATATAGTATATCTCCG 25603 36 100.0 41 .................................... CTGGGTTAAAGACTTCCCGCCGTCGGAAGCTATCCAGTCCT 25680 36 100.0 38 .................................... ATAGTGTTGGTGGAAGTAAAGGTAGTAGTCATTGGTTT 25754 36 100.0 37 .................................... GGCGTCAAGCAATTTACCAACATACACAACCTACCGA 25827 36 100.0 44 .................................... CCTACCCATTTTGCCATATCCCAGGCGGTGTAGACCCCGCCTAA 25907 36 100.0 36 .................................... AAGGAAATTTTATCGTTGGTTATTAAAAACCTTTAT 25979 36 100.0 44 .................................... AAGGATGCTTATTAAGTTAAGTGCCTCTTTGTATTTCTTCTTGT 26059 36 100.0 39 .................................... ACGAAATACCCTGCACGGCGCAGGATATACTCGATATGG 26134 36 100.0 32 .................................... TTCCACCAAGAAGAACCTGAAGGTACCCCAAG 26202 36 100.0 44 .................................... CTCAATATCAACCCCCATTAGTAGGAACCGAAAGAGGTCTTTTA 26282 36 100.0 39 .................................... TCATTGCTGTTGTCTCCTTGTTTGTTTTTTGCTTATATC 26357 36 100.0 38 .................................... TACATTCACTTTCATAGGCTGCTACGGGCATTTTTAAT 26431 36 100.0 46 .................................... ACGGGATAGCCTCTTAGAATCATATCGGCGAAAGCGGGGATAGCGC 26513 36 100.0 40 .................................... TTTGGGCTAAACTCTAGAGGATAGAATCTAACCAAGATTC 26589 36 100.0 46 .................................... CCATCCCATACCATAATCGCGTGGATAAATTGGTTAGGGAAAGATT 26671 36 100.0 39 .................................... GGGCTTTACTTAGAAGTTTATCCTGTTATATGGACAACT 26746 36 100.0 41 .................................... CTGAGGGGTGTTCAACCCCCATACGTTCTCTCTAAGGGGGT 26823 36 100.0 40 .................................... TAGACAAGACCGTCGGCGGGTCCTTGCCCATAGGTTTCAA 26899 36 100.0 38 .................................... ACTTAATGAGGCGCTTGTGCGGCTGGATAATACACACA 26973 36 100.0 39 .................................... AGCCGATAGACAAGTCAACCAACAGTTAACAGCCTACTC 27048 36 100.0 46 .................................... CCTAATTGTGATTTATATAAATAGTCCCAATCGGTAGGGCCGTTAT 27130 36 100.0 36 .................................... GGAGTATTCATCGCTGGTGCGAATAGCATCCACCTT 27202 36 100.0 36 .................................... TAGTCCGTATCTTTCGTCAATGAAAGTCAGTACCTG 27274 36 100.0 39 .................................... TAAGCAGTAGAAGTCAATGTTCATTTTTTCACCTATATA 27349 36 100.0 42 .................................... ATAAAAAATGACCGAGTAATTTCGGTCAACTAGTTGAGTGGA 27427 36 100.0 51 .................................... TTTGAATGGCAATTCCCCTGTCGGCTGGCTCTCGATGGCACTAATGCTGTT 27514 36 100.0 39 .................................... AGCAAAGAGTCATTTGTTTATCTCCTTTGATTTGTTGTT 27589 36 100.0 38 .................................... ATGTACTTGAGTAAGGCTGAAACATGGGATTGATAGTG 27663 36 100.0 40 .................................... CTCTTTACACTCTCTTCACACTCTTTATGTCTCTCTCTTC 27739 36 100.0 39 .................................... AAGGATTTTAACCATGATGTACTTAGACGGTTTTGTTGT 27814 36 100.0 34 .................................... GCATGAATCTGAAGAGGTCTTTTAACTCTTCCCC 27884 36 100.0 38 .................................... ATTGAGAGGCGGTAACTGGTAGTTCTCCTAGCGGGGAC 27958 36 100.0 37 .................................... TTTGGTAAGTATTCTTATCAAAGAATTCTGCGTTATC 28031 36 100.0 43 .................................... TTAAACTCCTTCGTGTAGGACTTCCGTTCCATCTCTTCCTCCG 28110 36 100.0 39 .................................... AGGGATTCTAGCCAAGCTTCAGCGCGCTTAACCTCTTCG 28185 36 100.0 41 .................................... TCGCACCCTCCTTCGGTAGGCAGGGGGCAATTGTGTGCCGG 28262 36 100.0 43 .................................... TTATAAATTACACTGCTGGTACGGAAAAGATTAGTCAATTCTT 28341 36 100.0 41 .................................... GTCGTTAGGGTTATTGTACACTAGGTACAGTGGTTCAACGG 28418 36 100.0 42 .................................... ATTCAAGTTCCCAGATTTTGTTACAGACAAGAATAACCTGAA 28496 36 100.0 38 .................................... GCGTATGGGCCGGTACCACTCCCCGCCCGCTTGGGGTG 28570 36 100.0 37 .................................... TTACTGGTATAGAAAGTATCAGGTTCAACGGTCTTTA 28643 36 100.0 38 .................................... TTCAAATAAATCGCCGTGGAGAATACCTGCTTTGTGTA 28717 36 100.0 42 .................................... CTCATTAGATTGAGCCGCTTGTTCTAGAATTGATTGAATATT 28795 36 100.0 43 .................................... GTTATGGTTGACTTAGTGAATAAAAACATAAGGATTCCTTATT 28874 36 100.0 37 .................................... TCGTGGTTGATCCGTCTTCTTGTACTGTGACAGGAAG 28947 36 100.0 38 .................................... GGAGGGAACGACAATACCGGTGAAGGCCGGAGTACGTT 29021 36 100.0 36 .................................... AGAGACCAGATTGATTCACTCAGGCATGCCGCAGCA 29093 36 100.0 41 .................................... TGGGGTTTTGTTGGGGTTATAGGATAGAGTCGAGTATTAAT 29170 36 100.0 37 .................................... TCATTCTCAGTGTATTGGAATTGAGCCGCTACGTCGT 29243 36 100.0 36 .................................... GGGATAGTAACTCAACACTCCCTTCGGGGACATTAC 29315 36 100.0 42 .................................... AGCGGGATACTTTGGTTCCTGTGAAGATACCAACGACGGACG 29393 36 100.0 38 .................................... CGTTAAGTACCCTGAAGGAACCTAGATACAATCCGTTG 29467 36 100.0 45 .................................... CTACCGCGAGCGCGAGGTGTTGACCCTGGTGGCGAACGGCCGCAG 29548 36 100.0 38 .................................... ACAAGATTTCCGATAGTACGGGGTCCCAAGTACGGGGT 29622 36 100.0 40 .................................... TACTCAAGGTGGTCAATCAACCTTTGGTCTAACTCCAACT 29698 36 100.0 38 .................................... CGCCCTAGAACGCGAAATAAACCCCTTAGAGAGAACGT 29772 36 100.0 40 .................................... GTGGGAACCAGCCAACGAATCTCTGTGGTCTTGAAGTCCC 29848 36 100.0 36 .................................... GTACACAAGGTACAACGACTCGGCGGATTCAGCGGC 29920 36 100.0 48 .................................... AAAGCTGAATTAGATTGGTTAGAAAAGAACGCCGTTATTCACTACGTA 30004 36 100.0 38 .................................... CGCCGAAGTTAAGGCACAAATAGAATACAGTTTTTGAG 30078 36 100.0 47 .................................... TTCACCCCAAGCGGGCGGGGGGTATTCCCAGCCCATACGCGGTGGAA 30161 36 100.0 42 .................................... AACGTAAAATAGGTACGGCGTGTGTGGTGAATTTATATCCTA 30239 36 100.0 37 .................................... AGACATCGCACTTCCCTTACACCATCCGCTGTCTCGA 30312 36 100.0 39 .................................... ACAAGATTTCCGATAGTACGGGGTCCCAAGTACGGGGTG 30387 36 100.0 38 .................................... GAAATTGCGGCTGCGGTATGTGGTACAATAGCTGTCAT 30461 36 100.0 41 .................................... GTAGCTGCATAAGTGGTAACGGGGTTTCGGGTGTAGGAACT 30538 36 100.0 41 .................................... CCCTTACGTCTTACCTAACGTAATCGGCTTCTATAAAACGA 30615 36 100.0 40 .................................... TTGGGGGTGAGAGAGACTATTCTATCTCAATGTCAACCCC 30691 36 100.0 40 .................................... CCCGTAGTAGACGGTATTACCGTCCATTGAATATCCTTCA 30767 36 100.0 39 .................................... TAGATAGAGTTGCTTGAGTAGTCATTGTTTTTCTTTTCC 30842 36 100.0 36 .................................... ATCTATGCACGTGGCACAAACTACAAGCAGTAGAGA 30914 36 100.0 43 .................................... TTGAGATATTTCCTTATGTAGGGATTTTCCAATCTCTCCCCGT 30993 36 100.0 39 .................................... TTCTGCATGTTCAGCCCATATTGTCCCCCAAATTGGGCT 31068 36 100.0 38 .................................... TCTAGTAATTCAACAATGTTTAACATTTTGTTTGGCTC 31142 36 100.0 37 .................................... TTGGACAACCAGCGTATGTCCGGTGGAGTTCAACGCG 31215 36 100.0 42 .................................... AAGGAAATACGGGTATATTTCCGAATAAAGTCCCGTTTGGTC 31293 36 100.0 38 .................................... TGCCTTAACTTCGGCGGCGCAGGACGACTCCATGAGGT 31367 36 100.0 39 .................................... ACCCTATCGCACAGGATGCCCGTGTGGAGTCGTCAAAAT 31442 36 100.0 36 .................................... AGATACTTCTCTTATTTGATTCCCCAATTGATATAG 31514 36 100.0 37 .................................... CTTTTATTGATACGGTCAACGAACTAGCTGTTGCTGA 31587 36 100.0 37 .................................... GTGGTATATCCGATATCGACCGTGCATGGAAGATCGA 31660 36 100.0 40 .................................... CGTAACAAGTAGGCTACTTGGGTTTCAGGTAGTCTAGTTT 31736 36 100.0 38 .................................... CAGGGAAAGGGTTCGGTGGCACACCGACTGCAAAAGAA 31810 36 100.0 42 .................................... CACTCAATGAATATACATAATTAATTGAGTCGTCCGGTAGTA 31888 36 100.0 39 .................................... GAAGCCTTTTTGGCGTCCTTCAGTGTAACGCCATAGGTT 31963 36 100.0 42 .................................... AGTAAATCGATTAAGTCCTCTCCGCGCACGCGGATTTCTCCA 32041 36 100.0 41 .................................... TTCCGATTAGATGCTACCAATAGGAAATTTTGCATGCTGGA 32118 36 100.0 40 .................................... TAGCATGAATCGGAGTAAGTCTCTCAGTTCATCTCCGGAG 32194 36 100.0 38 .................................... TAGCCGTTCTCTTGACAACCTTCAAATGAATATCCATT 32268 36 100.0 38 .................................... CCCGCTTGGCGGTTCCATGGTAAATTTCAGGGATATCA 32342 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================================== ================== 138 36 100.0 40 GTCTCTATTTATTAGAGAAATTAGTTGAATGGAAAC # Left flank : ACCTTTCTTGATTCGTTAGCTGAAAGATGCTTTTCTATGTAGTCGTTTACGATCTTCCTTGCGACAAGCGGCGCAAAAAAGTAGCAGATTTATTAGAGGGATACGGTCAGCGGGTACAATACTCTGTCTTTGAATGTATCCTCACTAAAGCTAAGTATGATGAATTGCGCCAAAGATTGAAAAAACGTATTAAAGAAGAAGAAGATAGTGTCAGATTTTATCCCCTTTCCGGTCATACTTTAGCTCAAGTAGAAATTTGGGGACAACCTCCTCTAAGCAAACCTCCTAGTTCTCTTATCATCTAATTTGATTTTACCCGAGAGCGAGGGACTCGGAAAATCTCTAGAAGCTTCCTTTTTCGTTCAGCCCCTCGAACTTAATCTGCATAAAGGTTTCAAGATTTAGAAGTTCCTTTTTGGGAGAGTAGATGACTTTTAAGTGTAACCCCCTCGCAATTGACCTCTGGACAATAGTTGGGATATAGGTTTCAATGAAGAAGG # Right flank : CATTAGTATCTATGGGGCGGGGTTTTAGAGGTCGTCCCAGAACCGTGGATATGCGTGCTGTAATTAATGCTATCTTCTATGTTCTGGTAGCTAGATGTGCCTGGTCATTGTTACCTCATGATTTCCCAAAATGGAAAACGGTCTACCATTATTTCCGGCAATGGCGTATAAATGGTGCTTGGGAGCGAATTCATGAACAGTTGCGACAATGGGTACAAGCCATAGAAGACCGTCATCCAAGCCCATCGGCTGCGGTTTTAGATAACCAATCGGTAGAAACAGCAACCATGATTCATCTTGAAGTTGGCTATGATGCAGGTAAACAAGTTAAAGGACGTAAACGGCATATTTGGGTTGATACTTTGGGCTTGTTAATGGTCGTGGTAGTCACTGCAGCTAACTTGCCAGAACGAGAAGGGGCTAAATTGGTTTTTGCTCTCGGACATCAAATGAAAACCAAATTTTCTCGTCTCATCAAAATTTGGGTCGATAGTGGTTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTATTTATTAGAGAAATTAGTTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 83341-91308 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCB01000006.1 Hydrococcus rivularis NIES-593 NIES-593_Scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 83341 37 100.0 39 ..................................... CCGAATACTCCCTGCTCCAGGGCATCATTGAGGTTGAGA 83417 37 100.0 37 ..................................... CTTTAGTTGTTTGTTAGTTAAGCCGAATTCATATTTA 83491 37 100.0 34 ..................................... AGGTAACTTTGAACATAACCCAAGCCCTGGTTGA 83562 37 100.0 34 ..................................... CCCACCCTGCAAGGGTAGCTCGGCGCCCTTGGGC 83633 37 100.0 37 ..................................... CAGCAATCTCAGGGATTCAATAGAAGATAAATCCCAA 83707 37 100.0 38 ..................................... ATTTCGCACTGTAGGACGCGTTACTATCTTTCCGTTTA 83782 37 100.0 33 ..................................... CTGGTTCGATTCCCCAGTCAATCGTTAGTTGTC 83852 37 100.0 33 ..................................... ACAATCGCCACGGCAGCAAGGATAGCGACTTCG 83922 37 100.0 35 ..................................... GTAAGAATTTAGGTTTGCGTAAATATAGCTCAAAG 83994 37 100.0 33 ..................................... CAAATTCTGGACAACCCCCGTGAATCTTGATAT 84064 37 100.0 33 ..................................... AGAATACAGAAAGAAGTATAAAGAAGCCCTTAA 84134 37 100.0 33 ..................................... CTCCATAACATCTCCTAATGGGTATATCAATAT 84204 37 100.0 34 ..................................... CGGCGGCACACCAACTGCAAAAGAATATCGCTAT 84275 37 100.0 34 ..................................... GCCTCAACGGCTTCAGTAAATGAGGAATTACCCA 84346 37 100.0 34 ..................................... CCCCATTTCGGAATTCATTGCACCTTTACTCAAA 84417 37 100.0 34 ..................................... TCAGGGTTTCGGGGTTGGTGGGTAGTTGTACCTA 84488 37 100.0 37 ..................................... CGAATAAAGAGAGAAAATCTAATCCCGCATAAAATAT 84562 37 100.0 39 ..................................... CTCTCCAACAAAGCGGGCTGTCGAACGAGAGGTATCATT 84638 37 100.0 33 ..................................... GTAAATCCTGAGGGACAACGACGACAGAGAGTT 84708 37 100.0 33 ..................................... CGGTCGCTCGGCGATCTGCCAGGCTAGGTATCC 84778 37 100.0 35 ..................................... CCCGTGGCCCCGATTACGGCAGCGGCTCTAAATGC 84850 37 100.0 34 ..................................... CCATTCCCACAAATCGTGCTCTTAGGAGTAATCA 84921 37 100.0 35 ..................................... GATTGATCGATTGAGCCGGACGCACTATTATTGGT 84993 37 100.0 42 ..................................... TCCTCCAGCTTCTCCCCCCCCGCCTAGCCAAGAATTTAACAT 85072 37 100.0 33 ..................................... AGCTTTCTTACTGCCAAGAGAAATCCCTCTGCT 85142 37 100.0 35 ..................................... GCGTTCACGGGGGTGAAAGTCAATTGCGTGGAACT 85214 37 100.0 34 ..................................... ACTATACTTTTCAACTGGTAATTCCTTGAATACG 85285 37 100.0 34 ..................................... GGTTCGGGTTTCTTGTACAACACAAAACCAGCAT 85356 37 100.0 36 ..................................... AATCCATTTTCAGCGGCTTGATTGCGTAGGTCAATC 85429 37 100.0 35 ..................................... ACCAGAGACAGCGATGATTCGCACAGGGAGAAGTT 85501 37 100.0 40 ..................................... GCTAAACGGGATTGAGATTGCGCCACTGCCTTCTCCCGAA 85578 37 100.0 35 ..................................... AGCTTCGAATGGAGATTTAATAGTGAGGATGAGGG 85650 37 100.0 41 ..................................... AGTTTCTTTCTTTACTTATAGGTACTCTCAAAGCATTCGGA 85728 37 100.0 37 ..................................... GGGTGGAATTCTAAGAATCCCGGCGCTGACTACGGCA 85802 37 100.0 44 ..................................... GCATGCGAATTTCTCCGGGGGGGGAGGCGCAGCCAAACCCCTGA 85883 37 100.0 38 ..................................... ATTCGCCTCGACGGACAACCAGATGATTGCGGAGATGC 85958 37 100.0 33 ..................................... AGTTTATAAAGCATTCGGACCTATTCCCTGAGA 86028 37 100.0 35 ..................................... GCTGGATCTTCCTCCTCTTCTTCCCCCTCCTCCGC 86100 37 100.0 45 ..................................... TACCGGTCAGGGTTTCACTTCTCACGAGAGAATGGGGGTTTCAGG 86182 37 100.0 33 ..................................... TACCGGCGAGCCACCTTCAGGGTACAAGCCGGG 86252 37 100.0 35 ..................................... TTCTTTGAATATGAAGCTCTGTGTGAGGCCGGATA 86324 37 100.0 33 ..................................... TATGTGCGCACCAGACGGTGGACGAATTTCGCA 86394 37 100.0 33 ..................................... GCTAATTCTCGATAAAATTCATTGGTTTTATCA 86464 37 100.0 38 ..................................... GTATCTAGGATTAGCTTTGAGCATCTTGAGCGGGCGAC 86539 37 100.0 32 ..................................... GAGCTAAGTCTGCGAGATTCTTAGCCGAATCA 86608 37 100.0 36 ..................................... TCAGCGCTCACGAGAGAATGCGGGTTTCAGGGGTTC 86681 37 100.0 33 ..................................... CGCGATTCTAGAGGGCATAGAGAGAATGATTTA 86751 37 100.0 35 ..................................... ATAATCGGCGCTGACGATGGTAACGATTACACTGA 86823 37 100.0 31 ..................................... GGGTTGAAGGATTCAATTGCCCGCAATAAAG 86891 37 100.0 38 ..................................... CATAAGCAACGAGCACGTCGTTGAGTGTGGGTGGCGCA 86966 37 100.0 35 ..................................... CTCTTTACCTGGGTCGATAAAGAGAAAGTAAGGCG 87038 37 100.0 40 ..................................... GAAGCCAGGTTCGCTTGTATATGAATCTGTGGCGGTTTAA 87115 37 100.0 33 ..................................... TGCGAATACAGCCGCTTCGCCAACCTGAGTGAA 87185 37 100.0 33 ..................................... CAGAAGATTCAGAGGCTAGCTCCATTAGTCTGT 87255 37 100.0 33 ..................................... ATTGATTGGGCAACCGGGATTATCAACCAAGAG 87325 37 100.0 34 ..................................... ATGAGGGCGTTAAGTGCTGTAGGGAGAGATTCAC 87396 37 100.0 36 ..................................... TGGCTAGCTCCAGCATAGGGAGAGGAGCTAGACCTT 87469 37 100.0 34 ..................................... CAATCCGAGCCATTCCTTTTGCTCTCCAGTTCCT 87540 37 100.0 42 ..................................... CATCCTTAACCTGTAAAGGGATACAAGTTAGCAAGGCTGGAA 87619 37 100.0 33 ..................................... CAGCGTTGAGGGCACGACATAGGAGATTGAATC 87689 37 100.0 34 ..................................... ATGGAATACAAAAGCTCTATTAGTGACATACTTC 87760 37 100.0 35 ..................................... ATTTCGCGTTGTAGGGCGTGTTACTATCTCTCTGG 87832 37 100.0 33 ..................................... AAATTTACTTTCCCGTGGATACCGTTCTCCACT 87902 37 100.0 34 ..................................... AGGTGGAATTCTAAGAATCCCGGCACTGACTACA 87973 37 100.0 33 ..................................... GGATTGTCTGAGAACTACTAGAAGAGAGGTTGC 88043 37 100.0 33 ..................................... GACTGGGTGCAACAATCTTTGGGCGCGGTAGCT 88113 37 100.0 33 ..................................... CTTGTGCCCTAAAGCTTCCATTATCTGAACAAA 88183 37 100.0 35 ..................................... TACTTCTAATATGCGTTTTGGCTCAACCTTATCGA 88255 37 100.0 33 ..................................... TGAGCTGCGGGAATCAAGCTTGCCCAGAATGCG 88325 37 100.0 33 ..................................... ACCCGTAGGAGTACTTGTGGCTTGACTTAAGAT 88395 37 100.0 36 ..................................... GGAACTCTCCATAGATGTTGGGCACGTACTGGATAG 88468 37 100.0 34 ..................................... CACGCCGTAACCTTTAATGCGGGCGGCATGATGC 88539 37 100.0 34 ..................................... TGACCATCTCTAACGCAACTGCAGAACTACTGGC 88610 37 100.0 33 ..................................... CAACCCATACGTTCTCTCTAAGGGGGTTATTTC 88680 37 100.0 35 ..................................... GAGTATCACCCAAACATCAAGTGATATATCTTACG 88752 37 100.0 35 ..................................... GAGAATTTCTTGTCCGCCTGGTACAGATTGCATAG 88824 37 100.0 37 ..................................... AATCCATCGTTACTATCATTTCCTGAAGGCGACACAT 88898 37 100.0 33 ..................................... AGGTGCGATTAACCTTGGACAGAAGAAGCTTGA 88968 37 100.0 34 ..................................... TATTTTTCTGGGGTAATATACCCCCTACTTTTCA 89039 37 100.0 33 ..................................... GAGGCGTCATTGACGAGAAAGTAACTCAAGTAA 89109 37 100.0 33 ..................................... TTTGCGAAGACGGATTGAGGCAGAAGCAGCTGG 89179 37 100.0 34 ..................................... GAAACCAAATTGGTTTTTCTTCTTCTCTAATTCA 89250 37 100.0 34 ..................................... GCGCTCTCGAGAGATGAGCCTGTAAAGCTACCAA 89321 37 100.0 37 ..................................... ACTGAAATTAGTAACGGTTTCTCTGATTCGCTTAAAG 89395 37 100.0 34 ..................................... GCAGTGTGCCATATTCAACCCTCAACTCAACAAA 89466 37 100.0 37 ..................................... AGCCTCATATTCTTTGAGTAATTCATCCAACGCCGGG 89540 37 100.0 35 ..................................... TTCGTTGGTTACCTCTTGTACTACTTGGTCTAGTA 89612 37 100.0 37 ..................................... ATACCGTACGATTCCATAGAAAGCTGCACCTGGAAGA 89686 37 100.0 38 ..................................... TTCAAACCTTCAATCGCATAATAACCTATTTTCCTCTA 89761 37 100.0 33 ..................................... TCGTTACGGATGCTTACTACTCAGAAGATACAG 89831 37 100.0 32 ..................................... ATGTCGCTCATTGCGGTATGGTAGAGCACTAG 89900 37 100.0 41 ..................................... CGATATATCTGCAATGCAGGATATGGGCGGATTGAAGAAAT 89978 37 100.0 34 ..................................... CCATGGCACTGAATCTTTAGCTGCCTCATCCCAT 90049 37 100.0 38 ..................................... AAGTATAGGATATATGTGCGTACGCGGAGGTGGACGAA 90124 37 100.0 34 ..................................... CCATACAAATAAAAGAGAGTTTATCTACCGCTAC 90195 37 100.0 35 ..................................... CTGCTGCATCTGCAGCTGGACATATGGGCGATGAT 90267 37 100.0 33 ..................................... TTGGGCAATCTTCTCCTGTAGACGTCCCTCTAC 90337 37 100.0 35 ..................................... AGCGCGGTGTTCCTCGGATATGCTTAGGTGTACTG 90409 37 100.0 36 ..................................... CTGGCTTAGAGAGAAGAAAGGCGTAGAAGTTACCAC 90482 37 100.0 33 ..................................... CTTATATATGCACAAAAAACTCTAAAAAATAAC 90552 37 100.0 33 ..................................... AAATGACCCCTTCAGCTGGGCGCAAAAAATCCC 90622 37 100.0 36 ..................................... TAAGCTGAAGGGAAGTTTGGATTCGACTGCAAGCTT 90695 37 100.0 33 ..................................... CTTTGGTAATCCCTAATAAATCTGTAGTGCCGC 90765 37 100.0 37 ..................................... CCCAAGAGAAAACGCGCCGGTCAGATTGAATATGAGA 90839 37 100.0 45 ..................................... CACCGGATTTCTCAATTCAGTAACACCGGCAAATTCATAGAGTAA 90921 37 100.0 32 ..................................... TGTTTCGGAACTACACAAGCGGGCGAAGGAGC 90990 37 100.0 33 ..................................... GACTACAGCATTTAGAGCCGCTGCCGTGATCGG 91060 37 100.0 33 ..................................... GCTCCTTCTCCTTCGGCAGGAACTAGATCGTGG 91130 37 100.0 33 ..................................... GACATGCCAAAATTAAAGGTTTTGGGTAAATCC 91200 37 100.0 35 ..................................... AGATTTAAATTGAGCGACGGGATTATCCAAGCTAT 91272 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 111 37 100.0 35 GTTTAAAATCAACTAAATCCCTATCAGGGATTGAAAC # Left flank : CCGTGTACGTTGTTATTAGTTACGATATTTCGGAAAATAAACGCCGGACTAAGATTCACAATATTCTGAAATCTTACGGACAATGGATGCAGTATAGTATTTTTGAGTGCGACTTAACTGAAACTCAATATGCTAAACTTCGCTCTCGTTTGAGCAAACTGATTCAATCTGAAACAGACAGCATTCGCTTCTATTTTCTCTGTGGTTGCTGCCAAGGAAAAGTTGAACGAATTGGGGGAGAGCAACCCCGCGACGAAACGATTTTCTTGGTTTAGTGCGCGAGAGGGTAGGTGTAAAAATGAAGCAAACGGGAAAAAGCTCAAAAGCTTGATGGTTCAGTTTTTTTAGAGAAATAGTGGTTTCAATCCGTCGCGCACTTTATCCAGTAAGCCTTTTGGCGATTTTAGCTTGTTGGTTGACTAAAACTGTGGTAAGCTTAAAAGAAGCTCGCGCAACTGTACCTCGAAAACTAAATACAGCAAGTTTTTGGGTTTTCCGCA # Right flank : CAGTAGTCGATTGACCCCCAGCACAACCTTACAACTTATCTAGGGGTAGAGCTAGAAGCCAATCAGCCGACGCTGCTAGAGTTCCTAAAAAATTCTGTCCCTTTTGAAGACACGATTTACCCAATCGAGAAAGAAGAAAATTTATTTCTCATCCCCTCAGACGATCAATTAGACAACGCCAACGAATATTTAAGCAGTAGTGGAGTCGGAGCAATGATTCTGTCGCGACGATTAGAAAACGTTGCGAGTGCTTTTCAAGTCTGCTTGATTGATTCTCCGCCCCAGCGATCGCAAATTGCCAAGACAGTCATTGGTGCGGCTGACTTTTTGGTGATTCCAGCAGAAGCCAACATTAAAGGATACGGCTCTCTGATCAGAACCCTTGACTTGCTAGCTTCTATGCGGGAGATTCGAGCGACATCCGCGACCGTAATGGGGATTATTCCTTTCCGAGATCGATGGATTGGTAGAACCCAAACTCATGAGAGCCGTCTTGCTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAATCAACTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 96256-97763 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCB01000006.1 Hydrococcus rivularis NIES-593 NIES-593_Scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 96256 37 100.0 39 ..................................... ATCTCAACAGACATCTGAGATGTTGCGCCCATTCTTCAA 96332 37 100.0 34 ..................................... CGTACCGCCGCGATGCGACCACATCTCGTCATAG 96403 37 100.0 36 ..................................... TTTCGTGCATATATATGATCGCGTGCGCGCGCGTTT 96476 37 100.0 35 ..................................... GTTGGCTACTCCACAATCTCTCTTGGTCACTGTCC 96548 37 100.0 45 ..................................... CAATCGTACAATCGCTAAATCCTGCAAACTGGTGGTTTCTACGTA 96630 37 100.0 36 ..................................... GGGCAGGTGTTCTCCACACTCATTGTCCGTCCTATT 96703 37 100.0 35 ..................................... CTTACGCCTACCTTCACAAAGAGTTGGTAGCTCAG 96775 37 100.0 34 ..................................... ATATTATTACCAACGATTGGGTGTGATGATAGGG 96846 37 100.0 35 ..................................... ATAACAAACCACTACCGTAGCAGGATTTAATATCC 96918 37 100.0 34 ..................................... TCAGATTGATTGACGGTGTAATACAAGCTATCGG 96989 37 100.0 35 ..................................... GACGGATATCTGCGCCCTGGACAGGTTTACACAGG 97061 37 100.0 44 ..................................... CAGTACTGTTCTGGACAATTCCGATACTTAGTGTGTAGTACGGA 97142 37 100.0 33 ..................................... AACGATTTAGTCGCCCAAGAGATCTCTCGTCGC 97212 37 100.0 35 ..................................... AATCACTCCCCTATCTTTGATGAATTTGAGCGAGT 97284 37 100.0 34 ..................................... GACCATTACCAGGCGCACGTAACCGCCCTTCTCA 97355 37 100.0 35 ..................................... CCTAGCTTGGACAACCAGAAAGGAACTCGACTGAC 97427 37 100.0 35 ..................................... GGTTTAGCTAGCGTCAATTGGTGATACTACTTAGG 97499 37 100.0 35 ..................................... GCATTCCCTGAAGTGACTTACATTGAGGAATACAG 97571 37 100.0 38 ..................................... AATCAACTCAGTTTTTGGAAGATTGTACTCTCTCAGTA 97646 37 100.0 44 ..................................... GCCGCCTTATCAGGCTGCTGATTGCAGTAAATCAATTTGCCTGG 97727 37 91.9 0 ...G......C................A......... | ========== ====== ====== ====== ===================================== ============================================= ================== 21 37 99.6 37 GTTTAAAATCAACTAAATCCCTATCAGGGATTGAAAC # Left flank : TAATCTTTTTCGCCACCATTGTAAAGCCAATTGTTGAGCTACTGGCTCGGGAACGACTTGAGTCATTGACGCAAAAAGTAAATCTGTTGCGTCATCTGTTGTATTGAGCGACAAGCACCCCAATTCATCCAATTGGATAAAAAAACGTCCTCCCTGATAATAGTCTCCTTCATAATCAACAAAAGGTGGCGTTGTTTTATAAAGCAATTCTACTACATAATATTGCTTTCCTCTGTATTCAACTGCCCCTCTAAGTAAAGGAGATTTATTTTTTTGACTTTTGGGCAAGCATGGATCAATTGAAGATGGAATCGATCGCAAAGACAGATCTTGAGCCATTGCCCGAGTTGTAATTTGATGACTTAAAACGATGACAAAAGCGATGGCGATAACTGTAAGTAAAAATCTTTTATTGGTGGAATTCATTTTTCTCAAGTTAGTTAAAATTAACGAATTTTCTTGGATCTTGCGAAGCACCTCTCCTTTTACCTCAACAACTT # Right flank : CCCAACATGACTGGTCATTTTTAATCCTCAGAAGAGGTCTAACTACGGTAGGGCAGACTGGAAGTCACGCTTGGGGAGAGACTCCCTCTAGTTTAGTTGGAGAAATTCTGCTGGGTTACGGAGACTCGTTGAACCAAGAATCCAACGGTTTTAGCGTAGCGTAACCGTTGGATTGTCAACTTTCTTCTTGTTTAGTCAATCGCTCTAAAATCTCAGCAATTTTGTTTTGCGTCTCCTCTACTTTTTCTAGGCGATCGTAATAATCAGCTTGTGTCTCCCAGAAATTTGCTTGAGAGATTGATAGTCTGGCAACCATCTTATCCATCCGCTTGACCGATTGCGTTAATCCACTAATGTCATCTTTCAATTCGGATAGCGACTCCGTAAATTTAAGTTGAGAATTTTGCAACTCTTGCTGCACAGAAAGCATTTTGTTGAGTACTTCCTGCATTTGCTCTAAGGTCATATAGAGATACCGTGCCCCCGAAGTGATCGCCTTC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAATCAACTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //