Array 1 277446-276987 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000002.1 Haloactinospora alba strain DSM 45015 Ga0197529_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 277445 29 100.0 32 ............................. CTTCGCCAGAACCCCGGGAAGTGGGCACGCAT 277384 29 100.0 32 ............................. TGCATCTTGATCGCGGCCACGAGGTCCGGGAT 277323 29 100.0 32 ............................. GAGTACGTGGGACGAGAGGAGGGCGCCGCGTG 277262 29 100.0 32 ............................. ACGGTGTTGCACGGTGGGTGTGGTATCCCCAC 277201 29 100.0 32 ............................. ATCTTCAATGGAACGTCGGCCGCGATCGACTC 277140 29 100.0 32 ............................. AATTGCGTCGAATGTCCGCCTTACGGCGGCAT 277079 29 96.6 32 ....G........................ ACGAAGCGGACGGCGCGGCCCCGACCGGACCG 277018 29 89.7 0 ....G......A...............G. | GT,A [276991,276995] ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGATCCCCACGCACGTGGGGATGGACCG # Left flank : CTGTCGTATCTGCAATGCCGGTGGCCCGTGGGGTTGCGGGTGCGGCTGCACGGGGTGGGTTCCACCGTGCACGTGGTCACCGGCCACACACCCCAGCCCGGCACGGATCAGGGTGACGTCCTCGTACGGCCCGTCAGGGGTGGCCCGGTGCGGCATGCCAACCCCCGCATCCTGACCGACTGGATCCCGGTCGAACTCCAGGAATAGAACCACCACGAAACGCGTGCCTTTTCTCGACCGGGCGCGCGACGGGGGTGTGCGTGGCGGCGCACACCCCCGTCCCCGGGTGCTGCCACCATCTCCCAGCACCCGGGGTCACACTCCACCCCGGGCGTCCTTCCTCTTCATCGTGCGTCCGGGAGCGGCCGGATGTCCGTGTTCCCATAGGGGCGTGTACACAGCGGTGGAACGGTATGGTCAGATCCTGACCGCATTCACCGGAATACCGGCCATGTGGAATCACAAAAGAATAACGCCGCGCATTACCGCAGGTCGTATTC # Right flank : CGGGAACCGGTCGGGCAGCACGCGAAAAGAGCGCCCCCGCCCAACCGTGAGGTGAGCGAGGGCGCTACGTCGTGCGGAACAGCTCAGGCTGCGACGTCGTAGCGGGGCTTGTGGCGTGAGGCCAGCATGACCCGGCCCACCCGCTGCCACCGCTGCGGCAGGTACTCCTCGGCGAACCGCGCCAAGCCGTAGTAGACGGCGGCGACGCCGGCCGCCACGACCGGGGTGACCACTTCGGTCAGCGCGCTCTCGGGTAAGTCGATACCGGCGTAGGCCCCACCGTCACCAGGGCACCCACCACATAGGGCACCACAGTGCGGATGCAACCCCTGGCGCCTGGTTTGGTGAGAGAGATGCAGCCCTTGTAGTAGTTGTCGGGTCCACCAAGACTCGATCTTTTCTACAAGGGCTGCTATGTCTGATTCTGCCATGACGCATGCCTGCGGTGCGCTGGCCGCGGGACACCTGGGTGAGTTGACCCAAGTCGTTTCGTTCGATCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 455313-454428 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000002.1 Haloactinospora alba strain DSM 45015 Ga0197529_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 455312 30 96.7 31 .............................A CGGCCGGACGAACACCCTCAACACTCGCCTC 455251 30 100.0 31 .............................. GTTGGGCTTGCATTTTGGACGTGCCGAGCTC 455190 30 96.7 31 .............................C GCGCGGTCTCCGGCGAGATCTTGTACGCCTT 455129 30 100.0 31 .............................. CCGCCCGGGTCTGGACGGGCTGGCCGCCCTC 455068 30 96.7 31 .............................T GCTGTGCGGCACGGAGGGCACTGCAAATTGC 455007 30 96.7 31 .............................C CAGCCGCGCGTACGATACAAACGGTGAACGA 454946 30 100.0 31 .............................. ACCGGAGTCCACAATCGAGCTCGGCCAAACC 454885 30 100.0 31 .............................. ACTACCGGTCCGCCCGCGGTGAGGACGGCCC 454824 30 100.0 31 .............................. CGTTGAGGAAGCTCACCGGAGCGCCCCACGC 454763 30 96.7 32 .............................A GTACGCGACGTTTTCGCGCTTCTCCCTTTCAG 454701 30 93.3 31 ...........A.................A ACGCCTACCGGTCGAAACGGCGCATCGCTGA 454640 30 96.7 31 .............................C CGGCCGTGGCCGCCCACCAGGAGCAGCTGCG 454579 30 96.7 31 .............................T GGTGTGTGGTGTAAGCACCGCGGCCGAACCA 454518 30 96.7 31 .............................C GGCTGGGTCCGCGGGCGGTGGAGCTGCCCTC 454457 30 96.7 0 ........T..................... | ========== ====== ====== ====== ============================== ================================ ================== 15 30 97.6 31 ATGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GGTGGCGAAGGGTGAGCCCCACGCACGTGGGGATGGACCCGGAGTCTGCGCGCTGGTGGAGTTCGAGGACGGGTGAGCCCCACGCACGTGGGGATGGACCTGGAGGCCGCCCCCCATGGGTGAGGAGATCTACGTGAGCCCCACGCACGTGGGGATGGACCCGGTCCCGCGCAACCGGCCCGGCACTGGTGCGGCGTGAGCCCCACGCATGTAGGGATGGGGCCGGGTGAGGTCATCTGTGAGCTGTGCTGGCAGCGGGTACACACACGGGCGGGAGTATGGTCGCGTTCTCAGCCTCGATGTCCCAACGGGATCGCGCTGGGGCGTAGTCGGCAGGGTGTGCGTCGTGAGGACGGATGTGGTCTCCTGGCCTCGTCGCGGTGGTGGATGCCGCGCCGCCTAGCAGTGGTCCGTTTGTGAGGGGTGTGCGTGCTATGTCCGAATATCCAGAAGTTGCACACACGGGCATGCGCGCGACCTAGAAGACCAGGTCAGAGAGG # Right flank : CCTACAAGACTCTCTTCCTTGATGGCGGTACATGCTCCCCACGCATGTGGGATACAGGCCGTCCACCCACGGGTGCCTCCGCCTCCGCATCTCGACGCCCGAGGGCGGGCCGGTCCGCCGCGTCACGGAAGCGGCGTGGCCGGACACACGTGTGACGCGCGAACACGAAAAAGGGCCACCGTCTGGGAAGTCCTGCTTCCCAGACGGTGGCCCTTTCACCAGCGAGGTTCTCTCGCCAATGCTCTGTCGGGGTGGGGAGATTCGAACTCCCGGCCTCTTCGTCCCGAACGAAGCGCGCTGCCAAGCTGCGCTACACCCCGAAGCAACGTCGGCCAGTGTAGCGGACGTGGCGACTGCTCGCACACGCGGCGGACCAGCACGCGCCACCGGCCGGTCCCACCGTCAACCGCGCAGCCTCCGCAGCGCCTCTCTCGCCCGCTGGGCCTCGGGCACACCGAGGTCGTCGAAGATCTCGGCCGCCGCTGTGACGTGGGCGAGGG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 455802-455587 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000002.1 Haloactinospora alba strain DSM 45015 Ga0197529_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =============================== ================== 455801 31 100.0 30 ............................... AGTCTGCGCGCTGGTGGAGTTCGAGGACGG 455740 31 96.8 30 ............................T.. AGGCCGCCCCCCATGGGTGAGGAGATCTAC 455679 31 100.0 31 ............................... TCCCGCGCAACCGGCCCGGCACTGGTGCGGC 455617 31 87.1 0 ..............T..A.......GG.... | ========== ====== ====== ====== =============================== =============================== ================== 4 31 96.0 31 GTGAGCCCCACGCACGTGGGGATGGACCCGG # Left flank : ACCCGGACACGGTGGAGCGCCTTTCCGGTGGGGATATGTCGTATCTGCAGTGCCGCTGGCCCGTGGGACTGCGGGTGCGGCTGCACGCGGCCGGTTCCACCGTGCACGTGGTTACCGGCCACACACCCCAGCCCGGCACGGCTCAGGGTGACGTCCTCGTACGGCCCGTCAGAGGTGGGCCGGTGCGGCATGCCAACCCGCGCATCCTGACCGACTGGATCCCGGTCGAACTCCAGGAATAGAACCATCACGGAACGCGTACCTTTTCTCGACCGGGCGCGCAACGGGGGGGGGGTGTGCGTGGCGGCGCACACCCCCACATCCCCCGGGGTGCTTCTGTCTTCCCCTCGGCATCCGAGAGTGGTCGGTTTTCCGTGGTCTCATGGGGATGTGTCGATAGCAGCGGAACGGTACGGTCAGATCCTGACCGCATTCACCGGAACACCGGCCATGTGGGGTTGCAAAAGAATAACGCCACGCATTGTTGCAGGTGGCGAAGG # Right flank : GTGAGGTCATCTGTGAGCTGTGCTGGCAGCGGGTACACACACGGGCGGGAGTATGGTCGCGTTCTCAGCCTCGATGTCCCAACGGGATCGCGCTGGGGCGTAGTCGGCAGGGTGTGCGTCGTGAGGACGGATGTGGTCTCCTGGCCTCGTCGCGGTGGTGGATGCCGCGCCGCCTAGCAGTGGTCCGTTTGTGAGGGGTGTGCGTGCTATGTCCGAATATCCAGAAGTTGCACACACGGGCATGCGCGCGACCTAGAAGACCAGGTCAGAGAGGATGCTCCCCGCGCACGCGGGGATGGACCCACGGCCGGACGAACACCCTCAACACTCGCCTCATGCTCCCCGCGCACGCGGGGATGGACCCGGTTGGGCTTGCATTTTGGACGTGCCGAGCTCATGCTCCCCGCGCACGCGGGGATGGACCCCGCGCGGTCTCCGGCGAGATCTTGTACGCCTTATGCTCCCCGCGCACGCGGGGATGGACCCGCCGCCCGGGTCTG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 4 481169-481748 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000002.1 Haloactinospora alba strain DSM 45015 Ga0197529_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 481169 30 100.0 31 .............................. GCATGAGCGCCGCGACCGCGCGACCCAGCGC 481230 30 100.0 31 .............................. CCATCGAAATCGATAGCGATGGTTCCACCGA 481291 30 96.7 31 .............................G GCTCCTCCAAGGTCGGCATGGCGTCGACCTC 481352 30 100.0 31 .............................. CTGACGAGAACGGGAGCAACACCGACCACAT 481413 30 100.0 31 .............................. GGGGCGACCCGGCCGACTGGTCCCTGCACAA 481474 30 96.7 32 .............................G AGTTTGCCACCATCATGGGAACGGTACTCATG 481536 30 96.7 31 .............................G GTCCATCAACGGCATCGTGAAACCCCACTCC 481597 30 96.7 31 .............................C GGGGCGCGCTCGCGGCGCTGCCTCCCTCCTC 481658 30 93.3 31 .........................G...C CAGGCCCAGTTGTCGTAGGCGTAGTTCGCCG A [481661] 481720 29 90.0 0 .......................-..T..G | ========== ====== ====== ====== ============================== ================================ ================== 10 30 97.0 31 ATGCTCCCCGCGCACGCGGGGATGGACCCT # Left flank : GGACACCGGTCTGCTGACCGTGTTCGTCTACGACGGGCACCAGGGCGGAGCCGGGTTCGCCGAACGTGGCTACAACGCCGCGGCGGACTGGCTGCGTGCCACGCGCGACGCCGTGGCCGAGTGCGCCTGCCCCACGGGCTGCCCCTCCTGCGTCCAGTCGCCGAAGTGCGGGAACGGCAACGAACCGCTGAGCAAGGCCGGTGCGTTGCGGCTGCTGGACACACTGCTCGGCTAGGCGGTGCCTTCCGGAACGCCGCGGAGCGGGCCGTCTCCGTCCGGGTCGGGTGCCCTGGTCCCGCTCGTTCCGGAACACGGTTGGGAAGGGGAGGGGTGGCAGGCTGGAGGAGTGCGGCGCCGGCTGGAGAGGGAGGTGGTCCGGATCGGGCCATGTCGTGGGAGGGGTTATCGCGGTGTGGTCAAGGGTTTTGTCCGTAATGCCCGTATATCAAGAAGTTGCACACACAGGGGTGCGCGTCGAGTAAAGTCCCAGGTCGATGAGG # Right flank : GGGTTGGCCATAGGTCGGGGATGCTTACGGCTCCCTACCCTTCCGCGCGCCTGCTGTGTCCACCCGCCGCTGATCGCGTCATGGTCGCGCTCCTCCCCGAGGGAAACCCCCGACACACGCTGCCCGCCTCTGTTTCGGGCGCTGTGTGTCTGCCTGCTGCATGGGCGCCGCGCCGTCCCCACAGCAGCCCCGAAGGCAGGCCGGGAGTGAAGGTATCCGCGCGGATTCAGCGGGGAATCCCGTCACTATAACTACTCAGAGTAGTTGGCGAGTGCTTCGTTTTGAAGGAATGCTGGTAGTTCTTTCCAGGAAATGTCCGGTTTCGTGATCCTTGGATAAAAATCATCCCATTACTCAGAGTGTCTGCTCCGTGTTCGTGTGGTGGCGCGGCCAGGGTGGGGTCGGAAATGCAGGCGAACGAGAAAAGGGGAGATCATGCGAAACGAGCTCACGCGCGCGTCCGTCGTCACCGTGGCCCTGGGGGCTGCTGTCCTGGTCGG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 132392-132117 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000003.1 Haloactinospora alba strain DSM 45015 Ga0197529_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 132391 30 96.7 31 .............................G ATGTTTGAGCTCCTGGTCGCTTGGAGTATGT 132330 30 96.7 31 .............................T CCAACATCGAGCAGCAGCAGCTCGACTACGT 132269 30 96.7 32 .............................A CACGGGCGTATGTCTCAAGCGACATGACCACG 132207 30 100.0 31 .............................. CGTGAGTCAGTACTACGAGCTGTGGGCCAAC 132146 30 83.3 0 G..AG..................A....T. | ========== ====== ====== ====== ============================== ================================ ================== 5 30 94.7 32 ATGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : CAGACTTTCGTGTTCTCAGGGGAATGTGTGCAGGCCGATGGAACGGTATGGTCAGATCTTGACCGCATTCGCCGGAATACCGGCCCTGTGGAATCACAAAAGAATAACGCCACGCATTATCGCAGGTGGTGGCCGTGATCCCCACGCACGTGGGGATGGACCGCTGTCGTGGTGCACCACATGGGCAACTCGGGAGTGAGCCCCACGTATGTGGGGATGGGGCCGGGTGAGGTCACCTGTGAGCTGTGCTGGCAGCGGGTCCACACACGGGCGGGAGTAGGGGCGCGTTCTCAGCCTCGGTACCCCACCGGGATCGCGCGGAGGTGTGGTCGGCAGGGCGTGCGCGGTAAGGACAGTTGTGGTCTCCTGGCCTCGCCGCGGTGGTGGATGCCGCGCCGCCTGACAGTGGTCCGTTTGTGAGGGGTGTGCGTACTATGTCCGAATATCCAGAAGTTGCACACACGGGCATGCGCGCGACCTAGAAGACCAGGTCAGAGAGG # Right flank : AGTCCGCGGAAACGCAGGGAACGACGTGCCCCGGCCGACCACACCAACAAAAACGGCGGCCACCCGGGAGCACCCCGGACTGCCGCCGTCGTTTCGCCCGTGATCTGGAACCATGTCAGCAGAAGAGCCGACGAGGGGAATCGAACCCCTAACCTATCGCTTACAAGGCGATTGCTCTGCCGATTGAGCTACGTCGGCCGGGCGCCGCTGGCCCTACAGGCATGGTACAGGTTCGCGGCTACTGCCCAAACGCGCGGCGGCGGTTCACCTCGTACAGGGAAACCCCCGCGGCGACCGACGCGTTCAGCGACTCCACACCGCTGATCGGGATCGTGGCGACCACGTCGCACGTCTCGCGGACGAGCCGGCTCACTCCCTTGCCCTCCGAGCCGACCACGATCGCCAGCGGGTCGCTCGCAACCGGCAGCTCGTCCAGCCGGGTGTCCCCCTCGGAGTCCAGCCCCGCGACGAACACCCCCTCCTGCTTGTAGCCCGCCAAC # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 138362-138149 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000003.1 Haloactinospora alba strain DSM 45015 Ga0197529_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 138361 30 96.7 31 .............................G CGCTCCGGTGGCACGTGAACCCGGCGGTACG 138300 30 100.0 31 .............................. GCGGTCATCACCCGAACTATCCGAGGGGCGG 138239 30 90.0 31 ........................AC...T GGAGAGGCTCTCCATCGGGGGCGGTGATCTG 138178 30 76.7 0 .....G...AT...T.T...A......T.. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 90.8 31 ATGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : GGGGTGTGCGCCGGTTCTTCGCCGTCGACCCGAACGGCCGGGTGGTCAACGTCCTGAGCCACCGCTGAACCGAGGCGCTCCCGGGCACCACCAGCAGAGGCGCTGGCCACTGACCTCCATGAACGGCAGTGGCCGCTGCCGTCGCCCCATGGCACGGCGGGCTTGCCGGAGGCCGCGGTGACGCCCCGGCAGCGCTGTGAGCCCCACGCATGTGGAGATGGGGCCGGGTGAGGTCATCTGTGAGCTGTGCTGGCAGCGGGTACACACACGGGCGGGAGTCTGGTCGCGTTCTCAGCCTCGGTGTCCCAACGGGATCGCGCGTGATCGTGTCCGGCAGGGTGTGCGTCGTGAGGACGGATGTGGTCTCCTGTCCTCGCCGCGGTGGTGGATGCCGCGCCGCCTAGCAGTGGTCCGTTTTTGAGGGGTGTGCGTGCTATGTCCGAATATCCAGAAGTTGCACGCACGGGCATGCGCGCGACCTAGAAGACCAGGTCAGAGAG # Right flank : ACTCCGCGGGAAAACAGGGAACGACGCGCCCCGACCGAGCAGACCAACCCGACACGCGATCTACCTGGCACTACGCGACCGCCCGGACATCTGGTTCACCGGAGGGAAGGACCACACCCGTGCGGCACGCTCCGGACCGACAACCGCGGCACCGACAACGAGCAGGTACCGCCCCGACCACACCAACAAAAACGGCGGCCACCCGGGAGCACCCCGGACTGCCGCCGTCGTTTCGCCCGTGATCTGGAACCATGTCAGCAGAAGAGCCGACGAGGGGAATCGAACCCCTAACCTATCGCTTACAAGGCGTGTGGCTCTGAGCGGTGTAGTGTCCTGGGAAACCGCAGGCTCCCGGCGAGTGGGAGCCGGATAAGCGATAGCTGTCCCGAAGTAGCAGGGACCCTACTTAGAGACTGGGTAGGTTCAGGATCTCTCTTTGTTTCCGAGTTCGGATCACGCACCATGCCCCGTGGTCTCAGGCGAGTCGATCCCGGAGGTCA # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 288317-287799 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000003.1 Haloactinospora alba strain DSM 45015 Ga0197529_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 288316 30 100.0 31 .............................. GCACCAAAGCTCGCGGGTTCTCCCGCGAGGC 288255 30 96.7 31 .............................T TTTCCGGAGCAACGAGGAACCCGCCTTCGGG 288194 30 96.7 31 .............................C ACCGCCCCGGCGAGTGGCACCACGACCAGCA 288133 30 100.0 31 .............................. TCGAACAGGTCATGAGGGTGTGTCATCCCGA 288072 30 100.0 32 .............................. CTGTTCCTCGCGATCAGCTGCTTCGTGATCGG 288010 30 96.7 31 .............................T GGACGGTGAGACCGTCTGGGCCGCGCTGGTG 287949 30 100.0 31 .............................. GGCACTGGACGGGCTGGAGTTGGTCGGTGCC 287888 30 96.7 30 .............................C TACCGGGCTCACTGGCGGACATGCTGGCGA 287828 30 76.7 0 .........A......T...A.C..G..GC | ========== ====== ====== ====== ============================== ================================ ================== 9 30 95.9 31 ATGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GCGCGATACGTGGACAACGACGATGGCGGCGCGTGAGCCGTGCCGCCAGTACGGGAACGGGCTGTCCTCTCGGTTCACACGGGGGTGCGGTCTCAGTGGCACGACGGTACGGTCAGAGCCTGACCACATGCACTGGAACACCGGCCATGTGGGATTGCAAAACAATAACGTCACGCGTCCTTACAGGTGGCGAAGGATGAGCCCCACGCACGTGGGGATGGACCGGGCGAGGTCACCTGTGAGCTGCACTGACAGTGGGTGCACACACGGGCGGGAGCATGGTCGCGTTCTCGGCCTCGGCGCCCTGACGGGATCGCGCGGGGGTGTGTCCGGCAGGGCGTGCGTCGTGAGAACAGTTGTGGTCTCCTGGCCTCGCCGCGGTGGTGGAGGCCGCGCCACCTGGCAGCGATCCGTTTGTGAGGAATATGCGTGCTATGTCCGAATATCCAGAAGTTGCACACACGGACATGCGCGCGACCTAGAAGACCAGGTCAGAGAGG # Right flank : TCCATGGCGGTCGGGCATACGTGAAGCGCCCGCCCAGCACGTGGTGGGCGGGCGCTCGTCGGGTCGCTACTGCGAGGGCGGGTACTGCTGCGGCGGGTACTGGCCCGGGCCTTGGTTGGGCGGCGGCTGGGGCGGTCCCGGCGGCGGAGCCTGGTTGGGCGGCGGCCCCGGATACGGCTGGGGTGGTTGCCCGCCCCACGGCGGCGGCTGTGGTGGCTGCTGTTGCTGCTGCGGCGGCTGGCCGGGTCCTGGAGGCGGCGGCCAAGCCCCGGTGGCGGGGCGCGGCCGGCGTTTACTCAGCACCAGCTCCACGACGTTGTCCACCACCACCGCGGCGAGCAGACCCAGGGTGACCCAGAAGCCGAACCGCGTACCCGCCTCGGCGTCCCGCGCCAGCCACTCGGAGTCCGAGGCGATCTCGTCGGTGATGGTGGAGAGCACCACGATCTCGTTCACCCCGATGAGCAGGACGGCGACGACGCTGGCGGCGAGTCCGGCCA # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 382675-382529 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000003.1 Haloactinospora alba strain DSM 45015 Ga0197529_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 382674 24 100.0 37 ........................ ACCCGGATGCCGGCCGATCGGGCATACACCTCGATCG 382613 24 100.0 37 ........................ ACCGTCCTGGTCGACCTCGATATCCTGCGGGATCGGA 382552 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 3 24 100.0 38 TGAGCCCCACGCACGTGGGGATGG # Left flank : GGTGGCCAGTCGTGAACCTCACTCCGCACGAGCGCCGGCAGCTGCGCGACCTACTGGAGCAGCTCGCCTGGGCCATGGAGGGCGGCGCCCTGTGGCCCAACCAGATCCACGACACCCTGCAGGAACTCCACACCTGCGTGGACACCTGGCTCGGCGACGAGAACACCGACACCGACGACACCGAGACCACGATCCCGCCCCAGTACGACCACTAACCCCCGCGCGGGTCCCGCACCCAGCTCCTCGCCGGGTGCGGGATCCGCCGCTGGCGTCGAGATCGAGGAAAACCACGCATTCACCGCACGCGATACGTGGCCGACTACGATGGCGGCGCGTGAGCCGTGCCGCCAGAACGGGAGCGGGCTGTCCTCTCGGTTCACACGGGGGGTGCGGTCTCAGTGGCACGACGGTACGGTCAGATCCTGACCGCATTCACCGGAACACCGACCCTGTGGAATTACAAAACAATAACGGAGCGCATTCTCGCAGGTGGCGAAGGG # Right flank : GTCGGCAGAGCCGTGGACCCTGCGCCCCTCAGCGATCGGCGTCGCACGACGGCGGAACGGCCAGCGGAAGCCGGGTGCGGCGCCGGGCGGGAGCGGACTTGCCGCGCACCCGCACCTCGCGGGTCCCGGCTCTACCCCAGCTCGTCCCGGCTCTCTCCCGGTCATACGCGCTACCGCGCGGAGTCCGGCACTCCCCCGCGGAGGTAGGTCAGTACCGCCTGGACGCGGCGGTGCCCGTTGCCGTCCTGGGACAGCCCGAGCTTGTGGAAGATCGCGCCGATGTACTTCCCGACGGCGGGTGTGGACAGGTCGAGCAGGGTGCGGATGCGCTCGTTGTCGTGGCCCTCGGCCATGAGACGCAGCACCTCGTGCTCCCGGGGTGTCAGGGAGGCCAGCGGGGCGTCCTGGGCGCGGCCGTGCAGCAGTTGGGCGACCACGTCCGGGTCGAGGGCCAGCCCGCCCTCGGCGACGCGGGTGAGGGCGTCGGTGAACTGGGCGAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAGCCCCACGCACGTGGGGATGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 5 436126-436582 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000003.1 Haloactinospora alba strain DSM 45015 Ga0197529_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 436126 30 100.0 31 .............................. ACCGGGTTCGGGCGGCCGATGACGTCGACGT 436187 30 96.7 31 .............................T CATACTGAGCGCATGAACGAGCTGATGACCA 436248 30 96.7 31 .............................G GAGTAGCTACCGCTACCGGACGCGAGGGGGA 436309 30 96.7 31 .............................T GGCCCCCGTCTTCAAAGACTTTTTCAAAACG 436370 30 100.0 31 .............................. CGCTCGGGTTCCCAGTGGTCGGTAAGCATGG 436431 30 100.0 31 .............................. GGGAAGTACAAGACTCCCCGCCGCCACCCGC 436492 30 96.7 31 .............................G TTCAGGTCCTTGGCCAGAACCTTCAGGGTCC 436553 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== =============================== ================== 8 30 97.9 31 ATGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : TCTCGCGTGGGAACAGCACTGCAGCGTCCCGGTTCCCCCCGTTTGGGAGCGCTCCCACAACCCAACTAAGCCACACGCCGCGGAGACAATCCCCGCAAAATTAGTGAAACTTAACTGTTATCCGGGCGGCGAGGCCGCGCTCGGGCTTCCCATCCTGGCCAGCCCCGGTGCGGGAGACCGGCTGAAGGGCATTGGGGCGCGGAGCCGTCGAGACAGGAACGGGGCCCAGTCCCGCTTGTTGGTGGCCGTCGCCCTGCCTGTACTGGGCCTGAGGGGCGGGGACTCGGTGGGAGTGGGCTTGGGCGGCGAAGATCTTGGGCGGAGAAGCATGCGTAGCGTAGGGGAGTTGTGGTCTCCTGGCCTTGCCGCGGCGACGGCTCGCTTTATATACCGTCCTACTGCCTGGTGGCCCGTTTTTTATGCTTTTGCGTTTTAAGTCCAAATATCCACAAGTTGCACACACGGGTATGCGCATGAGATAGAAGACCAGGTCAGAGAGG # Right flank : GCCATTGGCCTCAGGCGTGCCCCGAGGCCGACGGGTTGGAGATCGGCCCCGGGGCACGGGCTCTACCGCTGGGACGTTGCCTCAGGCGTGTCGGCGGGATTGGACGAAGCTGAACCGTCCGGCGACGTAGGCGGGGTCGGTGAGTGAGGCGGTTGCCACCGGGTTGGCGCCGGTGCCGTGGTAGTCGCTGAACGCCGCCGACTGGTTCACGAACACCTGCCCGGTGAGGTTCGCGGACAGGTTCACCCCGGCCGCCATCGCGGTCTGCTCGGCTGCCTCCAGTACCCGCTCGGTGGTGGAGTACACGCTCGCGGTGAGCGCCCCGCCCGCGGTGATGGTCTCGCGCATCAGCCGCAGCGAGTCCGGGGTGTCGTCGGTGGTGATCACGAACGACACCGGGCCGAAGCGCTCCCTGGCGTAGGTCTCGCGCTGTTCGGCGTCCACGTTCACGATGGCGGGGGTGCGCACCCGCGCGTCGGCGAACTCCGGGTGGGTGACAC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12568-13941 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 12568 30 100.0 31 .............................. CCGGTCACATCATCGGTGTGTTCCAACAACG 12629 30 100.0 31 .............................. CGGCCGCGCCCACGCTGCACGCCGCCCCGAC 12690 30 100.0 31 .............................. CGCGACATCCGCAGATTTATACCGTCCGCTT 12751 30 96.7 31 .............................C TGATGGAAGAGCAGTACGTAGAAACTCCGGA 12812 30 96.7 32 .............................T CACAACACAGCGAACACAGCGAGAGGGCGTCC 12874 30 100.0 31 .............................. GCGGAGAACGCTGACCGCCACGAGGCGGGGA 12935 30 96.7 31 .............................A CCGGAAGGGCTCCGAGAATCCCGCCTATGAT 12996 30 96.7 31 .............................A AGATTTGATGCGTTGGTGCGGGTCGCACATG 13057 30 96.7 31 .............................T CCGAATGCCATGCCCCGACACGCTGCCGGTG 13118 30 96.7 31 .............................T GCGCATGGTCGCCAGAGCGAGCACGGCCCGC 13179 30 96.7 31 .............................C GGAGGTCAGGCCAGAGACTGCCCCGCTGTCC 13240 30 100.0 31 .............................. CTGCGCAGTTCCGCGGTGTGGCGATGGCCGT 13301 30 100.0 32 .............................. GCGTCCTCGTCCTCGTCGCCCTCAGCAGCGAG 13363 30 93.3 31 ............................AC GGGAATCCGGGAAATGATAACGAGAGTTCAG 13424 30 100.0 32 .............................. TGACCGCTACCAGGTGGTTGTGGCGCCACTCG 13486 30 96.7 31 .............................C GCTTCCACCTGCGCGGGAGGACGAGTTCGAG 13547 30 96.7 30 .............................C CCAGGCGCGGGCCGCGCTGATGGTCGGTCC 13607 30 96.7 31 .............................T TTTCCGCCAGATCGGCATACGGCACCGGCAC 13668 30 96.7 31 .............................C GAGAAGCGGTGCGGGAGTACCTGGAGAAGGA 13729 30 96.7 32 .............................A GGTCGCGGCGCACCCGGCCGCCCAGAGGCTCA 13791 30 100.0 31 .............................. GATCGCTCAAGTACTCAGCAACGAACTGGGT 13852 30 96.7 31 .............................A ACCCCCACCTGCTGCAGCAGGTCCAGCAGGA 13913 29 90.0 0 .......................-C..G.. | ========== ====== ====== ====== ============================== ================================ ================== 23 30 97.4 31 ATGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CCCGGGCGTCCCACTCTGCCCGCGGGTGTCCTTCCTCTTCATCGTGCGTCCGGGGGCGGCCGGATTTCCGTGTTCCCATAGGGGCGTGCGCACAGCGGTGGAACGGTATGGTCAGATCCTGACCGCATTTGCCGGCATACCGGCCATGTGGAATCACAAAAGAATAACGCCACGCATTGTCGCAGGTGAAAAAGGGTGCGCCCCACGCATGTGGGGATGGGGCCGGGCGAGGTCACCTGTGAGCTGCGCTGGCAGCGGGTGCACATACGGGCGGGAGTCTGGTCGCGTTCTCGGCCTCGGTGCCCCAACGGGATCGCGTGTGATCGTGTCCGGCAGGGCGTGCGTCGCAAGGACGGATGTGGTCTCCTGGCTTCGTCGTGGTGATGGAGGCCACGCCGCCTGGCAGTGGTCCGTTTTTGAGGGGTGTGCGTGCTATGTCCAAATATCCAGAAGTTGCACACACGGGCATGCGCGCGACCTAGAAGACCAGGTCAGAGAGG # Right flank : GGGGATGGGTCTTGGTTCGTGGGGAAGGTAGCTGCGGACCCTCTCTGTCCTTGCTGTTCAGGGCGCTGTTCGCTCGCCCCCGACACAAGTACTACAGTTCGTAGTGGTCGTTTCCGGTGGGGAGCGTACGCACAGTGATCCCGACAGTGGGCGGAGGTACGGGGCGTGGTTGAGGGGCTGACCACCACCATCCACATCGCGTCGCTCGTCATGGCCGGTTGGTGCCTGGTCTCCACGTTCCGCGACCAGCCGATGGTGGTGCCGCACCTGGCCGGCATGACCGTGCTGTGGCTGATCCTCATCGGCCAGGCCGTGACCTCCACCGTCCTTATCACCGGCGGCGCGCGCCCGGCGGAACCCGTGGTCTTCGTGTCCTACCTGGCCACCGTCGTCCTGCTGCCGCCCGCCTGCGCCGTGTGGGGGCTCATGGACCGCAGCCGCTGGGGCCCCGCCGTCATCGCCGTCGCCTGCCTGGTGCTGCCGGTGCTGATGGTGCGGCT # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 135168-134346 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 135167 31 100.0 37 ............................... CTATCTGGCTCCCCGGTTCAATCTGGAGAAAAAGGTC 135099 31 100.0 34 ............................... GCCGGAATCCGCAGCGTGCGTGCGGCGGTGTGCG 135034 31 100.0 34 ............................... GCTCCGCCCCCTGCCCGCAACCGGCAGATGCGGT 134969 31 100.0 33 ............................... GAGCCCAGCGACAGCGGCGGTGCCGCGGGCCCG 134905 31 100.0 39 ............................... CTGATCCAGCCGCAGGGGCACAGGGCCTGGTATCGCCAG 134835 31 100.0 35 ............................... AGGACGTGTGGTCCGCCGCGCATCCAATATCGCCT 134769 31 100.0 35 ............................... GCAGCGAGGGCACCATGGTGGGGACATTCGACCGG 134703 31 100.0 32 ............................... GCATGGGCGTGGAGGGAGTGGCCCCAGTCCAC 134640 31 100.0 36 ............................... ATAGCAGCGTGCTCCGGAACGGCTCCGCGTGCGCGT 134573 31 100.0 34 ............................... CGAGCTACGTGCAGCGGCGGTACGAGGGTGACCC 134508 31 100.0 34 ............................... CGCGTTCGTTTCTGGGCACCCGACCCGCTACCCG 134443 31 100.0 36 ............................... CTGGGGAAGATCGCCAAATGCCACCCGAAGACGGCG 134376 31 96.8 0 ..........................A.... | ========== ====== ====== ====== =============================== ======================================= ================== 13 31 99.8 35 GTTCACTCATCATCCCTGGAGGGATCGCAAC # Left flank : TGCTCACCTCCTTCACTCCGACGGCGTCGGCAGTCAGTCATAGCAGCAGCCACCGACACGCATCAGCGAAATGGAAGAAAAACCACGAAGTATCTTCAACCCACTATGTGTGATTCCTGGTCACAGCCCTATACGGCACGGAAAGAATCGGGTGGGCACGAGTCTGGGTGAGGTGCTGGTAGAGGGCGGCACCGTGCTTCCTGTTGTGCAGAGGCAGAGTTATTATTCCTCCCGGATTCGGATGAAGGCGTCCGTCACTAAGTTGAACCGCCTCCAACCGAGTTTCGTGGTTGCCTGCGGATCCAGGACGGGAGACCTACGTCTGAGAACCACGCCAGGAGAGCCTCGTGGGAGCATTCCAGGAATGAGAGCGAATCGACCACTCAACGAAAGCTATGTTTAGCTTTATGACCTGCAGCGATGCATTACTGTCGGGTTGCTGCAAAATAGCGCCTTGCAGCTGCTGCGAAATGCCATGTGACCTGCGATTTTACTCTCGG # Right flank : AGATACCACCACCGCTCCCGGCCAGGGAACGAACTAGCTTAACGCGTCACGAGGTGAGGCAGGCGTAGCCCAGGCAGAGAAACCGCACAGTCACGGGGATGCACCCACAGCGACAAGGGCCTCGCCTTCCTCCGAAGGGACGTTGCCCTCACCGCGTTCCTCAGCCCGATGGTGGCGTTCGAGCGCGCCTGCCTTCCCGCGTTGCTTGACCATACGCCCCCACCGCTCACGGCGATCGAACGCCCACGCGATCTCCTTACCCGAGGGAAGCGTGCCATCAGCACGCTGGTGCTGTAGCGCCCAGTTCCACGCCCGGCACTGGACCAACGGCGGGTCGGGGTCGCCGCGCGTATTCTGCCCGGCAGGAGTGGCCCTCGGCGTCGGGGCGTCTCCCACGACGCGCAGATGGCGCTGTCCCCAGTGATCCGCGTTCCTTTGCGGCTCATCCATCGTGATTGTCGACCGTGTTTCCCTGACCGTTGCGGCGTCACTGCCCTCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTCATCATCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 3 143741-144960 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 143741 31 100.0 33 ............................... ACGCGTTGGTGGGTGTCGCCGGTGCGGGCAAGA 143805 31 96.8 34 C.............................. GCCAAGACTGCCCGTTCTGCGACAAGTTGGACGG 143870 31 100.0 33 ............................... AGTGTGACGGTGCCGTCCACCTGGAATTCTGCG 143934 31 100.0 33 ............................... GATCACGGAGGCGGCCCACCAGCTGGGCATCGC 143998 31 100.0 35 ............................... ATCGACGATCCCCACGATCAGGTCGGCCGAGGCAA 144064 31 100.0 34 ............................... ATAGGGGGTGGTCACCATGCCCGGAGTACCAGGG 144129 31 100.0 36 ............................... ATTCCCGCTTGATTCTGTGGGGATCAGGCGGAGTGA 144196 31 100.0 38 ............................... CTGCAGGAGTCCACCATGTCCTGCAGCGACGGCAGGAG 144265 31 100.0 39 ............................... GCGAATCCTCCCGCGCGCCGCCCGGCGTCCCGGGAGGGG 144335 31 100.0 33 ............................... GCCTGGGTGGCAAGCGTGTCGACGTGGTCACTG 144399 31 100.0 35 ............................... CGGTCGGAGAATCGGGAGGCGGGTATGGGAGGCAG 144465 31 100.0 33 ............................... GCGGTGGTTCCGCTGCACCGGCCCTGCAGCCTG 144529 31 100.0 35 ............................... GCCGCCAGATACAGGGCAGTGGACGTGTCGTCCAC 144595 31 100.0 35 ............................... GAACGGTCGCGGAACGGCTGTGTGCGCAGGGACTA 144661 31 100.0 36 ............................... GCGTTCCGAGCGTGGAACACCCGGAACGGTCGCGGA 144728 31 100.0 37 ............................... ACACGCTGCGGCTGGCCGCCCTGCACACCGCCCTATC 144796 31 100.0 36 ............................... GCTATGTGGGACGCTACGGGACTCTGGCAGCGTCCC 144863 31 100.0 36 ............................... CTGTTGATCCACCGCGCCCCCTGATGAGGAGTCGCG 144930 30 90.3 0 .......................T..-.T.. | T [144958] ========== ====== ====== ====== =============================== ======================================= ================== 19 31 99.3 35 GTTCACTCATCACCCCTGGAGGGATCGCAAG # Left flank : GTTCACCACCGTTCTCTGCACCGCAAAGTCAGCTACGAGGAACTCATCCACCTCGAAGCGTTGAAGATCGTCCGCCTCTGCCTCGAGGACACCCCTTACAAACCCTTCCGGCCCTGGTGGTGATCCGATGTTCGTCGTTGTCGTCTACGACACGCTCGCACAGCGCAATCCCAGGATCCTCAAGACGTGTCGACACTATCTCCATTGGGTCCAGCGCAGTGTGTTCCAGGGTGAATTGTCAGACGCCCAGCATCGTTCCTTCACCCAAACAGTGAAACGCCAGCTCGATACCGAATACGACAGCGTATTGATCTATCGCATCCAGTCCCCACAACTGGTCCAAACCGAAACCATCGGGCAACACCCGGGGACGACCAGCCCCGTTCTCTGACCACTTGGTATAACGCTTTGACCTGCGACGCTGCATTACTTCCGGGTTGCTGCACACAAGCAGCTCACCATGGCTTTGATATACCTTGTGACCTGCGATTTTACTCTCG # Right flank : GCCTCTAGAGATTTGGTTCCAGTCAATTTCAGAAAGTTCGGTGTCTTGGTGCGTGATTTCGGCGAATACAGTTCGTCCATTAGGGACACTGCTGTAGTCCCAACGCAGGGCAAAATATTCAACCAGAGTTAGTCCGCGTCCGGACTCTTGCCAAGGGTCCGTCTTCATTAGACGGGGAAACTGTGGCTGTTTCCCTGATCAGTGACTTCCGCTCGAATTATGGTGCTCTCGATACGTAGGGTGACCTGGAACATCCCTCCCTCCCGGCCGCTTACGGTATGGACGATGGCGTTACTTGCTAGTTCGCTGAGAAGGAAAGCCGCGCGCTCGGCAAGACCACTACCGATGTCGATCAACCGCGTGTGTGTGAGCATCCACGTGCGGGCTGACCTGACTTCCGTGGCGACGCCGGAGAAGGAACGCTTCCACTCCCGTTGGATGGACAACAGGCTCACGCAGATATCCTCCAAACCTGCGGTTCGGAACTGCTGTTCTGCGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTCATCACCCCTGGAGGGATCGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 225201-225536 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 225201 30 100.0 31 .............................. GGTTGGCGTTGTATTGCTATTGACCAACCGG 225262 30 93.3 31 ...C.........................G GGCGTTTCCGATTCCGGAGACGGTCCCCCAG 225323 30 93.3 31 ...C.........................A TACGGCGCATGCTCACGCAGAGCGACTATTT 225384 30 90.0 31 ...C........T...............G. AACGCTCCGGACAACCTCTGTGGATTGTCAC 225445 30 80.0 31 G...G....A......T...........GA GGTACGGGTCAGCCGCACACTGACACCGCGG 225506 30 70.0 0 ....G..T.A......T....G...T.GAG | A [225529] ========== ====== ====== ====== ============================== =============================== ================== 6 30 87.8 31 ATGATCCCCGCGCACGCGGGGATGGACCCC # Left flank : CATTCCTGGACTTCCTCCACACCTACCGGCACTCCAGCGGAGAGCCGAAACTATCGCTTGCCTTGTCCACCTACGCCCAGACGGCATCGGTCAGAGTCCGGCGAGTAGACACTACTGTGACCGATCTTGGGGCGCCCTTCCCGAACGTCGACTGAGATAGGGGGCAATTGCGGTTCCGGGGCGCGGTGTGTGCGGGGTGAGCTATCCCACCGCGTCGGCGACGACAGCGGAGGTGTCGCGTTCTCGACGTCGCTACCACGCGGAATGGATACATCGCTGCTACACACACTTGCCGACCACATGGGATCAGGCGCGGTTTCATCCGGGGGAGCGTGCACAGCGACGGGAGATGTGGTCTCCTGGCTCCGTCGTCGCGGTGTTGGGTTACGCGCCGCACTGCTCGTTGATAACGCGTTTTTGAGGTATGTACGTGTTATGTCCGAATATCCAGAAGTTGCACACACGGGCACGCGCGTGACATAGAAGACCAGGTCAGAGAG # Right flank : GGTCAGTTACCTGCTGGGAGCGGGAAAGCTCCCGCTCCCAGCCACTCCACTCCGTCTTGTGAAGGCCGGGTGCGTGGGTAGCGGGTCACGCCGGGCGCGGCTCACTCGGGTCGCAGGGCGACGATGGGCACCCCGTGCTCCCGGTCGGCGCCCACCCGTTCGTAGCTGGCGTCGGTGCTGTCGACCTCCTGGCCGACCGCCCGCATCAGCGCGGCGGCGGTCCGAGGGTGGCGGCGGGCGTACTCGGCGAGGCGGCGCCCCGACTCCTCAGCCGGCAGCGGGCGCGCCGTGCCCGTGTAGCGGCGCCATCCCACCTGGAAGCGCACCCGCGGCTCGGTGCTGATATTGCGGAACCACTGCGCGCGTCCGCCGTAGCCGGAGGCGACCAGGTACCCGCCGGACTCCTCGTGGCGCCCCACGACCTCCAGTACCACCTGGCGGGCCCTGCCGCTCTTGCGCCCGATGTGGGTCAGCAGCACGAACCTGTTGCCGAGGAGGCC # Questionable array : NO Score: 3.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGATCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 291220-290825 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 291219 28 100.0 33 ............................ CCAGATCCGCAGCGCCGTGGTCACGTAATCCAG 291158 28 100.0 33 ............................ GGGGAACCCGTGAGCGAAAACACCAACATGTGC 291097 28 100.0 33 ............................ GGTGATGACCTGTCTGAGGTCGTAGGCGGTGAC 291036 28 100.0 33 ............................ TACCCGGGCGGAGCTGTGGCGCCTGGAGCTGGT 290975 28 100.0 33 ............................ TACAGCCCGATCGCCAGGGCCGCCAGCGCGCTG 290914 28 100.0 33 ............................ GGCGCCGTTGGGCAGCGTCAGGCGGGTGGTGGC 290853 28 96.4 0 .........................G.. | A [290829] ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.5 33 GTGAGCCCCACGCACGTGGGGATGGACC # Left flank : CCGACACGGTGGAGCGCCTGTGCCATGGGGATCTGTCGTATCTGCGTGCGCGGTGGCCCGTGGGACTGCGGGTACGGCTGCACGCGGCCGGTTCCACCGTGCACGTGGTCACCGGCCACACACCCCAGCCCGGCACGGATCGGGGTGAGGTCCTCGTACGACCCGTCAGGGGTGGCCCGGTGCGCCACGCCAACCCCCGCACCCTGACCGACTGGATCCCGGTCGAACTCCAGGAATAGACCCCAATGGTTATGCGCGTCGCCGGTCGGGCGCGCAAGTGGGGGCGTGTGTGGGCTGAGGCCGCACACGCCCCCACTGTCGTTCCCGGCTGCTCCTGCCTTCTACTTGGCGCCCCCGGGAGTGGTCGGTTTTCCGTGCTCTCATGGGGGTGTGTTGATAGCAGCGGAACGGTACGGTCAGATCCTGACCGCATTCACCGGAATACCGGCCATATGGGGTTGCAAAAGAATAACGCCACGCATTGTTGCAGGTGGCGAAGG # Right flank : GGTGTCCTCGTCCGGCGCGGGCATCGGGCACTCGGGGCACCGCGCCAGCTACCGAAACGGCCGGGACCCTAGTTCTCCTGGCGCAGGGTCACGGTTTCCGCGTCGGGGTCGCCGCCCAGCTCGACGGTGACGACACCGCCCCGCTGCTCTAGGTGCGCGCTGTCAGGGCGCGCGCACTGTTCCTCGTCGGGATCGGCGGAGGTCGCGGCGGCGTCGTAGCCCGTACCGGACGTGTCGGTGAGGACGAGGTCGTACTCGCAGTCGTCGCCCTCGAGGGTGGCCTCCCGGTCTCCCTCGCTGATGTCGAGCTGGTACTCCTCGGTTCCGCCGTATCCCGCCCAGTCCCCGTCGTAGGAGGCGTCGAACGTGGCGGGCTCCCGTGGCGGGGCGGTGTCGTCGTCGGACGGGGTCTCGGTCGTCTCGTCGGGTGAGCCGCCCGTCGTGGTGCCGGTCGGCGGCGGGGATTCCGTGTTGTTGGAGGAGCCGGGACTGGACTCTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 6 302220-301885 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 302219 30 100.0 31 .............................. CCACACTGCGGCCCTCGTCCACCAGGCACAT 302158 30 96.7 31 .............................C GCCCGGGGACTCGTTCTCGTTGGTCACAGAC 302097 30 100.0 31 .............................. CGCGGCCGGTCCGGGGGTGGACGACCGCGAC 302036 30 100.0 31 .............................. GATACGGAATTCTTGGTTCACACTGTCCAGG 301975 30 96.7 31 .............................A ACGGAAACCCCCCGTGAGGGTTACCCGGACC 301914 30 93.3 0 ............................TC | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 ATGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : TGATCGCCGCGGTGGCGACCAGCGGCCACCAGCCGGACCCGCCGGAGGGCGGGTCGGGGACGAGCCGCGGCAGGAACACGAGAGCCGCCACCACCGCGGGGACGCCGAGCAGGAGCCCGGCCAGCGGGGTGAACTGCCCCGTGATCAGCAGCGGGAGAGCGACGAGGAGCCACGCCGCCAGCGCGAGCGCGGGCACTGCCGTGGCACGGGCGAACACACGGGCGGGTGTCGGGGGCATACGGGTAACTGTGCCAGCTACCGCGCCGGAGCGGGGTTCGTTCGCGCTTCGGGATACCACGCGGGATCAGGCGCGGTTTCATCCGGGAGAGCGTGCACAGCGACGGGAGATGTGGTCTCCTGGCTCCGTCGTCGCGGCGTTGGCGTTACGCGCCGCACTGCTCGTCGACAACGCGTTTTTGAGAGGTGTGCGTGCTATGTCCGAATATCCAGAAGTTGCACACACGGGCACGCGCGTGGCCTAGAAGACCAGATCAGAGAGG # Right flank : ACCCAGCGGGAATGCAACGAACGGCACGCCCCGGCCGACCAGACCGCTCGGACCCAGCATCACGCTCGACGCCTACGCCCATCTCTGGCCGGACTGGCTCGACGAGGTGGCCGACGCTCTCGGCGCCACCCGGGCCTCACAGCTGGCTAGCCTCGCCGAGCCAGAGGCCGCGTAAGCGATCGCTGTCAGTGTGCAGAAAATGTGCATCCGCCGCTCGGTCCCGCCGGGCGGCGGTTTCATGTCATGGCTCTGCCCTGCGATTCCGGGTATGAAAAGAGCCGGCGGGGGATCGAACCCCTAACCTATCGCTTACAAGGCGTGTGGCTCTGAGCGGTGTAGTGCCCTGGGAAAACGCAGGCTCCCGGCGAGCGGGAGCCGGATAAGCGACAACTGTCTCAAAGTAGCAGAAACCCCAGTCGGAGAACAGAAAGGCAACCTTCGGTCGGAGCAGATTAGGTGGCGGATCACTACCGGTTGGCCGCTTCCGGCCACAGGGAGTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 469559-470756 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 469559 37 100.0 34 ..................................... ATCGTGTCAAAATGCATAATGACAAGGCCGACTA 469630 37 100.0 33 ..................................... CGGCTGGCACGCACAATGGTCATGCGCCCGGAA 469700 37 100.0 35 ..................................... CCGCCGTTGAAGTCGAGCCCGAAGATGAGGGTGTC 469772 37 100.0 41 ..................................... CGCTGGAGCCGTTGGCATTGGCGTCCCTTCGTTCTCATCGT 469850 37 100.0 35 ..................................... CCGGGGGTCTGCATGAGCTGCATGTAGTCCACGAC 469922 37 100.0 35 ..................................... GGTGGGGCGCCTGCTCCGTGGTGTCATGGTGTCGC 469994 37 100.0 36 ..................................... GAGGTCCACACCGACGACCACACCAACCAGGCCGGT 470067 37 100.0 34 ..................................... TCCTCTATGTCGGTGTTACTGGCGTCGTCGCATC 470138 37 100.0 34 ..................................... TAGCCCGCGCGCTTAAAGTCGCGGAACAGCGGGA 470209 37 100.0 33 ..................................... ATCCCGGGGCTGCTGAGCGGGTCGCTGAGCCTC 470279 37 100.0 37 ..................................... GGCAAGGACGAAGCGAATCTCGCCCTCATGACGTCCA 470353 37 100.0 38 ..................................... GTCGAAGCCAACCGGAATCCTGCAGGATTCCACGGAAG 470428 37 100.0 36 ..................................... TACCGCACCACCAACGACCAGCTCGCCGAGGCCGCC 470501 37 100.0 36 ..................................... GCCAAGGCTCCGGGCGACGCCGTCGACGACGGCGAC 470574 37 100.0 37 ..................................... TCGACCACTGTCGGCCGTCCGATCAGCAACAAACGCG 470648 37 100.0 35 ..................................... CGCTCGACCTGCGACGCGACACGGACCGGGAACTA 470720 37 73.0 0 .....T.T...TC....CG.......T......GGA. | ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 98.4 36 GTATCCACGGCCTCTCGAAGGCCGTCACCGTTGAAGG # Left flank : CGACCCACGCCCTTCCCCTGTTGGGCCTGACCGGGGACGCGCGCGGGCCCGTGGCAACCCTGTGGTACCGGCTGCGCCGGCAGCGGGTGATGGTGTGGCCGGTGTGGCAGCAGACGCTCGACGAGCCCGCGATACGCGCGCTGTTGGGGCATCCGGGAGTGCGTCCCCGGGCGGATACTGACAGTTCCGGCGAGGTGGTGGTGCGACGCGCGAACATGGCGCCGTTGGGGGTGATGACCGTGGGCGCGGCGCAGCGCCGCCCGGTTCCGGGTGGTAAGTCGGCGGGGCCGTTGGTGCCTGTGTCGGTGCGGGTGGTGTGAGTATGGTGGTGGTCTGTTGTGGATGGTGTGGGAGGTGCGGGTGTGACAGTGCCGCGAACCGGGAGTGGTCATCGGTTCCCGGGGAGGTTCCCAAGCACAATCTGGGGCAAAACGGTCAGAGATGTGGAGTGTAGAGGCTGTCTTTCGGCCCCTTACTTGCGTTTTCCCTGGTCATCTGCC # Right flank : GCTCCGCGCGGCCGTGCCGCGGGCAGTGCTGGCGCGGGGACCGGAAAGGGTCTTGTGGGGCCGGCGGGATTCGAACCCGCACTGTACAGGTCCTAAGCCTGCCGCCTCCTGCCGTTGGGCTACGGCCCCGGGGTCACACCGTCACCGTACCCGCGTGCGCGGGGCCGGTGAGGCTGTTGGGTGTGACAATGACAGTTCGGGCCGGGAACCGCAAATTCCCCGGCCCGGGAGCTGGTGGGCTGTCACAGGCCGAGGTCGCGCTTCACCCGGTCCACGTGGCCGGTGGCCTTCACGTTGTAGAGCGCCTTCTCCACAGTGAGGTCGGCACCGACGACGAAGGTGGAGCGGATGACGCCCTCGACGATCTTGCCGTAGTTGTTCTTCTCGCCGAACGCCCCGTAGGAGCGCATGACCTCCTTGTCGGGGTCGGCGAGCAGCGGGAACGTCAGCCCCTCCTTGTCCCGGAACTGGGCGAGCTTGTCGGTGGTGTCCGGGGAGAT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCCACGGCCTCTCGAAGGCCGTCACCGTTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.30,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 8 1128776-1129540 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 1128776 30 100.0 31 .............................. ACACGGAGAATTTAGACGCCAGGCAAGCGAA 1128837 30 96.7 31 .............................T ATGAGTGGCCTAGACACAGAGGTAGTCCGTT 1128898 30 96.7 31 .............................C AGCGGCAGCCCGACTATTGCCAGTTCCGACA 1128959 30 96.7 32 .............................C ACGAATGCCCCTCTTGCATCACCCACGTAGTC 1129021 30 96.7 32 .............................T CGAGTACTTTGCGGTCCGAGGGTCCGGCCTGG 1129083 30 96.7 31 .............................T GGAAGCAGGCCCTGGCCCAGCAGGAGAGTCT 1129144 30 100.0 32 .............................. TCATCCCCCTACACGACCACGACAGCACGCAG 1129206 30 100.0 31 .............................. GTCGCCCGGCACCTGCGCAGGGCCGCGACAG 1129267 30 96.7 31 .............................T TGATGCCCTGCGGGACAAGATCGGAGGCCGG 1129328 30 100.0 31 .............................. CGCTCCGGTGGCACGTGAACCCGGCGGTGCG 1129389 30 100.0 31 .............................. TGGAAGCCGACAATGCCCCCAGGGCGCACAC 1129450 30 96.7 31 .............................A GCTTCCGGTCGGACGAAAGCAGCTCGGCTCC 1129511 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ================================ ================== 13 30 98.0 31 ATGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : ACACTCCCTTGCCCGGGTGCTGTCACTATCTCCCAGCACCCGGGCGTCCCACTCCGTCTCCCGGGCGTCCGTCCTCTTCATCGTGTGTCCGGGAGCGGCCGGATTTCCGTGTTCCCATAGGGACGTGCGCACAGCGGTGGAACGGTATGGTCAGATCCTGACCGTACGCACCGGAACACTGGCCATGTGGAATCACAAAAGAATAACGCCACGCATTGTCGCAGGTGAAAAAGGGTGAGCCCCACGCATGTGGGAGGTAGGGGCCGGCCGAGGTTGTCTGTGAGCTGTGCTGGCAGCGGGTGCTCACACGGGATCGCGCGTGATCGCGTCCGGCAGGGCGTGCGTCGTGAGGACGGATGTGGTCTCCTGGCCTCGTCGTGGTGATGGAGGTCGTGCCACCTGGCAGTGATCCGTTTTTGAGGGATGTGCGTGCTATGTCCAAATATCCAGAAGTTGCACACACGGGCATGCGCGCGACCTAGAAGACCAGGTCAGAGAGG # Right flank : TTGCTGCCCGGTGGGATCTCTCCCCGGGAGATGTGAGCCCCACGCACGTGGGAATAGGTCGCCCCGAACTCGGGGCGGCCCTCTCATCTACCGTGAGGACATATGACCTACCCCAACCTCCACTATTTCCCGCGCCGCTCCGGATGGGCGGTCACGTCGTTCGTGCTGGGCATTCTCGGAGTGGTCACGACATTCCCGTTGTTCGGACTGGTCACCTTGTTGCCCGCCGGAGCCGCGCTGACCGGTGCCTACGCGCTACGGGTGACTCACACCCACCAGCTACGCGGCAGAGTTCTCGCCCTGTGGGGGTTCTGGCTCGGAGTCGTGTTTTTCCTGATCAACGTCGGGCTGCTGATGCTTGGCATAGTGGGGATGCGTATGGAGTAGGAGTATCTCCCGTGCGTGGACGAAGGTGAGGAGATCCCGCCTGGGGGAGCCGTCGATGGCGAGGCGCGGATGGTGCTCCCACGAACCCTGATGGGGGCTCAGCACGAAGAGCC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 1143321-1143533 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1143321 30 93.3 31 .C...........................A CGTGCCACCGGAGAGCGTTGTACAGCCGACG 1143382 30 96.7 31 .............................C GATGTCGCGTACTTCGAATGGTCGATTCCCC 1143443 30 100.0 31 .............................. GGCGACGCGATACCCACACCGATCCGTGACA 1143504 30 90.0 0 .........................G..TA | ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.0 31 ATGCTCCCCGCGCACGCGGGGATGGACCCT # Left flank : GGGGAACTCCTCGTCCCGTGCGGTCAGCGGGCCGAGTCCGCTCCCGGAAGGCACCGGATCCCCCGCATGGCAGCACAGGCTGGGGCGGGTGGTTCGGCGGGACGCCCGCTACCAGCCGGGCCACGAGCTCCGGTGCCGTCGAAGCCGCCGATCCCGGCTCGTTCTATGCGTTGTCTGGCCGTATCGCGATGTCGGTGCGGTTCGAACAGTTGGGGCCGATCGCCCCTTACCCGTGGGCTGACGAGGCGATGCCAAGTGGGGAAAGTCCCGCTGTGGGGTGTGACTCCGATGCCTGATGGGATGAGTGGTCACTTTTCAACCGAAGAGTATGCGTAGCGTATGAGAGGTGTGGTCTCCTGGCCCTGTCGCGGCGGCTGGTTGGTTTCATGCGTCGCATCGTTCCCCGGTAGTTCGTTTTTGGGGTTTCGCGTTTTATGTCCAAATTTCTACAAGTTGCACACACGGATGCGCACGTGGAATAGAAGGCCAGGTCAAAGAGG # Right flank : ATGTCTCGCCCACGCGGGGCGAGGAACGTTCGGGGCAGGTGCGCGGTCTTCTTGTTGGCCGGATCCGGCCAACAAGAAGACCGGAAACCGACTGCAAGACTCTCCTGTCTCTTATTGAATCGTGGCATGACCTCTTCCGGAGGATCTTTCCTCTCTACGGACGACCTTTCTGACGCGGCACGCCAGGTTTGGGCGAAACACAACCAGGACGACAAAGCATGGCTTCCGCTGCGGCGGCACATGGCAGATAGCGCGGCGGTAGCGGGAAGGTTGTGGGACACCTGGTTGCCGTCTCAGGTCCGTGAGCTGATCTCGACAGCTCTCCCCGGCGGTGCCGCCGACGCGCGCAAGCTCGCCGTGTGGATCTCCGCTGTCCATGACTGCGGGAAAGCTACCCCCGCCTTCGCGTGCCAAGTGGACGGACTGGCGGACAAGATGCGCAGGGAAGGTCTGACCATGCCTACCGGGAGGCAGCTTGGCGAGGACCGCAAACTGGCACC # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 1152913-1153125 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 1152913 30 100.0 32 .............................. GGTGTTGGTTCCGGAACGTTCTGGGACTGCTG 1152975 30 93.3 30 ............................AC CAGCATGTCGAATGGCGCGTTGTGAAGAAC 1153035 30 100.0 31 .............................. AATTCCATCAGCTGATCCGGAGTCCCGTAGG 1153096 30 90.0 0 .........................GG.T. | ========== ====== ====== ====== ============================== ================================ ================== 4 30 95.8 31 ATGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GGGCCTGAACTACGGCTCGGGTGAGGAGCCCGATGGGTATTGGGAAGTGATCTGGTGACCGTCATCGTCCTTACCCACTGTCCAGAGGGTTTGCGGGGGTTCCTCACTCGTTGGCTTCTGGAGATCTCCCCGGGTGTGTTCATCGGCGGCCCCTCGGCTCGGATCAGGGAGGCTCTGTGGTCGGAGGTGTGCTGCTACGCGGGCCAGGGACGTGCTCTATTGGCGCACAGCGCTGACAATGAACAGGGGTACGCCTTCGAAACGTTTGAGCACAAGTGGGAGCCCATCGACCACGAGGGAGTGACGCTTATCCACCGCCCGCATCAGCGCTCGAAAGCGGACAGGCGGAAGGGGTGGAGTAAGACGGCGAAACGCCGTCGTTTCGGTAAGAGCTGATCGAGGAACGTGTGTCCTTTATGTGTAGTTTTTGGTTTATGTCCAAATTTCTAGAAGTTGCATACACAGCCCTACAGGCGCGATGAAACTCCAGGTCAACGAGG # Right flank : GGTAACCGGGCCCGGCTCGGTGGTGTCCGGGCGCGGGGTGAACGCGCCCGGACAAACGGGGTCAGGAGTAGGCGACCTGGCCGTCGAGAACGGTGAACAGGGCGCCCGCCCGGTTGAGCCCCTTAGGCGGAAGGGTCTCGATGTCGTGGTCCAACACCACCACGTCGGCGAGCTTGCCCGGAGTGAGCGACCCCAACCGGTCCTCCAGCCCCAGCGTGTGGGCGGCGTCGCGGGTGTGGGCACGCAGCGCCTCGTGCAACGTCACCGCCTGTTCGGCGCCGATGTCCTCGCCCTCCCGGGTGCGGCGGCACACCGCGTTGCGGACCGTCTCCATCGGGCGCAGGCTGGACACGAACGAGTCGCTGGACAGGACCGGACGCAGTCCCAGGTCCAGCTCCTCCCGCATCGGCTGCAACCGGTGCGCACGGTTGCCGAGCCTGCGCAGGAAGTCCCCGCCGCTGTCGTGCAGGAAGTTCGGCTGGTTCACCGGGATCACGCCC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 2904073-2902885 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2904072 29 100.0 32 ............................. ACGAGACCGGCGCCGGATACAACCGCGCCCGC 2904011 29 96.6 32 ............................T CCACTCCGCAAGTGCCCCAAACGATGGGCGAC 2903950 29 100.0 32 ............................. GCCGCCGCCTCCTCCTCCGGCGATGACGACGA 2903889 29 100.0 32 ............................. GACAGCACCGACACGCAGGGCGATGACGCGGC 2903828 29 100.0 32 ............................. AAGGAACGTCCAGATGAGAACTGGTTCAGTTT 2903767 29 100.0 33 ............................. AAACATTGACATGCTTGTGTCAAGGAACGTTGA 2903705 29 100.0 32 ............................. ATCGGTCTCTGCCACTGCTTGCTCCTTGCGTG 2903644 29 100.0 32 ............................. GAACACGAGTCGGGGTCGTAGAACGCCCACGG 2903583 29 100.0 32 ............................. ACCTGGGCGATCCGGACACCAGGCGTGAGGTT 2903522 29 100.0 32 ............................. CATCACTGTTCGAGGACTTGACCGAGTCCTCG 2903461 29 100.0 32 ............................. TCATTTTTCGTTTTCGTTTGGCCGGAACGACT 2903400 29 100.0 31 ............................. AGACGGTGCCCGCGCTGGATCAGGCCGTGGC 2903340 29 100.0 32 ............................. AACCATGCAGTCCAGAATGGACAGGGTGTAGC 2903279 29 100.0 32 ............................. TGGATGCCCGATGACCTATAACTACAAGGTCC 2903218 29 100.0 32 ............................. TCGCCGCACCTGTCAAAGCGGCTCACCCACGT 2903157 29 100.0 32 ............................. GCCCGGCGCTCCCCCGAACGCCGGGCCTCACC 2903096 29 100.0 32 ............................. TCTCCGGCTGATGATCCGGACCGGCTCCGCCC 2903035 29 100.0 32 ............................. CGCGGCCACGGTGGGCATCCCCTCTTCGATCG 2902974 29 100.0 32 ............................. TACCGCGCCCAGTACACCTGGCGCTGCCCCCG 2902913 29 93.1 0 .....................A.A..... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.5 32 GAAGGTCCCGCGCACGCGGGAGTGGACCG # Left flank : CGGAGGTGGCAGCGTGGGTGGCGGGGTTAACTACGGTGGCGAGGACGCGGCCCGGACAGTGCCGGCGTCCGATCCGGACGTCCCCGAGGGAGGCCACTGAGGATGGGGTCCATGGTCGTCATCACCACGACTGCGGTGCCCGACCATGTTCGGGGAGCGTTGTCGCGATGGATGGTGGAGCCGTCCACTGGCGTGTATGTGGGAACGATGAGCGCGCGCGTCCGCGATGAACTGTGGGATGCGGTCAGTGCGTCGGTGGGGGATGGGGCGGCTGTGTGCCTGTATCCCGCCGACAACGAGCAGGGATTCGACGTACGCACGGCTGGTGAGCGGCGGCGGGAGGTCGTGGATTGGGAGGGGATGATGCTGGTGCAGATGAACCCTCTCGCGCCGTCTGAAGTCGAGGTGAAGCGGCAGGTGCCAGATGGATGGTGATGCGTTTGTTGTCCCAGCGAAGGTTGCAACAAGGTAACGCTCCACGTTTTTGCAGGTGAAGTGCT # Right flank : CACCTTCCCTCTATGGGACTAATAGTGCTTCGTTAGGTTGCTGCGTTCGTGTTGTGTTGACGTGATCATGGATTGATGGATCTGGCCGCCGTAGAGGAACTACGCGAGATCTCGACGCGTTTTGCGCTGAGGTGTTCGCTTCGATCCCTCGCAGGGATTCCCGGGCGTGGGGGACCCCCAGACGAACGAAAGCCCGACCAGCCCGGTGGCCATCGTGTCCCACACCCGCCGGTCGCCGAGCTCAGGAAACAAACACATCGCCAACAGGAAGTACACACCCACCCGCGAGGGAAGCGCGCGCAACCGCTGCTGGAGCATCCGCGTCTCCTCAAGGACCGCGTCGACGAGTGCGAACGGGATGATAGCGGTCAACGCCCTGAGGTGGCCGGGCGCGAACACCCCCGCGGCGACCGTGACTGTGCGGGGGATCGTGGTCACAGCAGACATTGAGGGAGAATGGTAAGGCAACGGAGTTCCGGAAGGACAAGCTGTCTTGGTCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGGTCCCGCGCACGCGGGAGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 12 2916922-2914086 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2916921 29 96.6 32 ............................T GCTGCCTTCGTGCTGAAGGAGCAGGGGCTGGA 2916860 29 100.0 31 ............................. GTTTCGGCCGCTTCCGCTTGGGCCAGCAACA 2916800 29 100.0 32 ............................. GCGATGTTCCCCCGATGCTTAGCCGATATGTC 2916739 29 100.0 32 ............................. CAGGCCGCCGTCGAGGTGCACGAGGAGAAGGC 2916678 29 100.0 32 ............................. TGCCGGTCGTCGAGCCACCCACCACCCGGCGA 2916617 29 100.0 32 ............................. GCGAACTCAACGTCGGTGTTGTCGTTGCCAGA 2916556 29 100.0 32 ............................. TCCCGCATCAGTGAGGCGGCGCTTGCTGAGTA 2916495 29 100.0 32 ............................. ACGATCTCGGTCTCCACGCCGGAGTCCTCATC 2916434 29 100.0 32 ............................. AGATCTTTTCTCAGGAGTCCCCGCCCCGGCTG 2916373 29 100.0 32 ............................. GTGTTGTTCTTGGTGGGCCGTGCGGCCCCCAC 2916312 29 96.6 32 ............................A CCCCGGATACCGTCCCCTGGTTCTGGTACTCC 2916251 29 96.6 32 ............................A GATCAACCACGTGGTGATGGTCGGCGGCTCCA 2916190 29 100.0 32 ............................. ACCAGCTTGTGTGATCCCGCGAGAGCGGCCAG 2916129 29 96.6 33 ............................A GGGGTCGCCCCCCAAGAGGATGCCGACGAGGCC 2916067 29 100.0 32 ............................. GACATCACAGTGCCCTACGTATGCGACCTGCA 2916006 29 100.0 32 ............................. TCCGCACCACGCTGGACGATGCCCCCATCGAC 2915945 29 100.0 32 ............................. CTGCTCGGGGCGTATGTCGAGACTCATGGAGA 2915884 29 100.0 31 ............................. GCCCAGCAGGCCAAGGACGCCCACGCAAGCC 2915824 29 100.0 32 ............................. ACCCACTCAGTACTGACCTACAGACCCACTCA 2915763 29 100.0 32 ............................. CGCCGCCCTGCGGCAGGGGCTCACCCGGGCGG 2915702 29 100.0 31 ............................. CCATTCGGGCTTTTCGCCGCGCTGTTGAGGG 2915642 29 100.0 32 ............................. GGGAAGGGCGCCCGGGGGCGGGGCATAGTGGG 2915581 29 100.0 32 ............................. AAAGGCGACCATGACTGAGACTACCCGAGACA 2915520 29 100.0 32 ............................. TAGTGGTCCATCCCCACGTGCGTGGGGCTCAG 2915459 29 100.0 33 ............................. TGACAGCGCACCAGCAGGATGAGCAGCAGACGC 2915397 29 96.6 32 ............................A AATCAACCGGGCGCTCTCCGACTACCTGCCCT 2915336 29 100.0 32 ............................. TCCGGCGGTGGCCTGTTCGGCAAGAAGTCCGG 2915275 29 100.0 32 ............................. GCATTGGAACAGGAGCGCAAGGCTCGGCGCGA 2915214 29 100.0 32 ............................. TTGCTCGAGGGCCATCCCGCCTACATCGCCGA 2915153 29 96.6 31 ............................T GAACCTCCACCGAAACCGCCCCTCTGGCCGC 2915093 29 100.0 32 ............................. GCCGCTCATGGTCTCGCCCTCCGACATATGTG 2915032 29 100.0 32 ............................. TAGTGGTCCATCCCCACGTGCGTGGGGCTCAG 2914971 29 100.0 33 ............................. TGACAGCGCACCAGCAGGATGAGCAGCAGACGC 2914909 29 96.6 32 ............................A AATCAACCGGGCGCTCTCCGACTACCTGCCCT 2914848 29 100.0 33 ............................. AACGCCCGACCGGGTTCCCGGCCGGGCGGAGCG 2914786 29 100.0 32 ............................. CACAACGTCCGCAGCTGCGTAGCGCTCGTATA 2914725 29 100.0 32 ............................. CGTTGCGGGACGGGATTTGGCGCCCTGTATTG 2914664 29 100.0 32 ............................. CGTCGCAGGCAGAACGCCCGGATCGCCGCGAA 2914603 29 100.0 32 ............................. CGTCGCAGGCAGAACGCCCGGATCGCCGCGAA 2914542 29 100.0 32 ............................. GACCTTTTGCGGTCGCATGGTGGCTGGGTCGG 2914481 29 100.0 32 ............................. GCACGGTTCAGGTCCCTGCGGGAGGGAGGACG 2914420 29 100.0 32 ............................. GACCTTTTGCGGTCGCATGGTGGCTGGGTCGG 2914359 29 100.0 32 ............................. GCCGGATCCTCGTCCGGGCTTAGGGACGTCCT 2914298 29 96.6 33 ............................A GCTGTCGATGGCCAGCATCCACTCCTTCTTGCC 2914236 29 100.0 32 ............................. CTCGACTACGACAACCCGGACCATCGCGCGGA 2914175 29 100.0 32 ............................. GAATTGGGATCGAGTACCCAGTTCTCCGCGAG 2914114 29 93.1 0 ........................C.T.. | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.3 32 GAAGGTCCCGCGCACGCGGGAGTGGACCG # Left flank : TGGCCGAACAGTTCGGCCGTAAACCCAGGTGGGGCCGACTTGTCAAACAGAGGGGCGAACAGGGGCTCCTGACAACAGCCGATGCGATGGAGGGGGAATCCGACGAAGGTCTGGTGATGACCTCTACCGTGTCAAGGTAGTATGGCCGTTCTTGTGACTAGCCCGTTCCGGATCCGAGTAGGTCAGGTGGGCCTCTTGGGGCTGTTCGCGGCCGTTGGAAACGGGTGGGCGCGGTTCTTGCCTCCCATTCGTCTCAGGGGCGAATAGTGTCGCTGCTGCTATTTTGTCCGTCTGACCCTCGCGGTCAATGCCGGGCTGTCATGCCGTGTGCCGCTCGTGCCGCGACAGCCGAGCACCGATGGAGCACACTGTCCTTGCTAGCGGGCTTCCAGTCGATATGGCGATTTTTTGCATCGAATATGAATGAGTAGGTGGCTTCCGTATGCTTAAGATTTATGTTGCAAGATGGTAACGCTCCACGTTTTTGCAGGTGAGGTGCT # Right flank : AAGGCGTAAGGCCAGCTCCGCAGCGGGATGCCCTGTGCCTTGGCCATGGGGGAGGCGGCACAGCAGCCGAAAGCGAGATGTCGGCCAAACACTCCCTGGCCGCGTACCTACTCAGCAGACTCACTGAAGAGGGAAGCAGCGGCGTGGTCTCATACATAGACTGATCGAGTCTCTTTCGAAAGATTGGAACGGCACCGTCTCCACGCTTACTGATATAGTCTGGCTCTACGCGCTCCGGCGCGCTGGAGATACCGCACAGGGGAGCAAGGAGTGGCCGTGACGCTTGGACACCTCTCGATCCGCGATGCCTGCATTTGGGTGAGCGGCGCCAGTATGGGGGCTCTTGCTGCGCTGATCTGGCTGCTCACTGGATAGCAGCGTCCATGCCTCAGGCGCCGGTTGCCATCGGAGAGACCGGTGGCAACCGGCATCCCACGTCCGTGGGACCTGGTTGATCGCTTAGACGACGGCGCCGCCTCCACGCGGTCCACCTCCGCCTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGGTCCCGCGCACGCGGGAGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 13 3184008-3184368 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 3184008 31 100.0 39 ............................... CTGCTTCCTTGTCGGAGCCCTGATCGGACTTGGGGTCAT 3184078 31 100.0 31 ............................... ACGTGGCCGTCACCCGCGCCCAGCAGACCCT 3184140 31 100.0 34 ............................... TCGCCTCGGAAGCGATCGCCCGTCCGAACCGAAA 3184205 31 100.0 37 ............................... CGGCTCGCCGGCAGCGCCCCCCTGCCGGAGTTCTTGT 3184273 31 100.0 34 ............................... CTCGAGCCACGTGGGCTCTCGTTGACCCGGACCC 3184338 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 6 31 100.0 35 GTTGCGATCCCTCCAGGGGTGATGAGTGGAC # Left flank : CGAACAGGGACAAAAGCCGATGTCGGTGGTGGTCACCGCCGGGCAGCGGGGAGACGCACCGCAATTCGCACCGGTGGTGGAGGGCATCCGGGTGGCCGGACACCAGCGGAGCGGTCCCGCGCGCACCCGACCGGTGCGGGTGCGCGCGGATAAGGCCTACAGCTCGACGGAGATCCGTGCCTACCTGCGCAGACGCAAGATCAAGGCGACGATTCCCGAACCCGCGGACCGGGTGCGCAACCGCAAACGCACCGGGCATCGCGGGGGCCGCCCGCCGGGGTTCGACAAGGTCGATTATCGGGCCCGTCACGCGGTGGAGTGCGGGATCAACCGGCTCAAACGGCACCGGGCGGTGGCCACGCGCTATGACAAGCTCGCGCTTCGCTACGAGGCCACCATCCAGATCGCGGCCATCAACGAATGGCTCTAACTTCCCAAACAGGCCCTAGGGGTGATGAGTGGACACTGACAGCCGTTGCGTCGTATGTGCAGCGGAGAGC # Right flank : CCCGAGGGTAAAGTCGCAGGTCACGCCGCAGTTGTAGGCGGCTGTGCGACCCGGTTTTGCAGCGACCCGGAAGTACTGCAGCCTCGCAGGTCACAGCGCTACAACACCCCCAGGCTTAGTGAGCTCTCGCCTCATGGTCCTTCCGGGAGAGGATAGCCCACCACGCCTGAGTGTTCCGGCGGGACGCGGTCCCTCACGTCACCGACGTCGCGGCGGGTTCCGCATCCGGGGGAAGTGGCCGGATACGGAACCCGTGCGGGGGTTACTGGTCGTGGTGGTGCGGGATCGCGGTGTCGGTGTCGTCGGTGTCCGTGTTCTCGTCGCCGAGCCAGGCAACCACGCGCGCGTGCAGTTCCTGGAGGATGTCGCGGATCTGGCCGGGCCACAGGGCGTTGCCGTCCATGGCCTGGGCGAGCTGATCCAGTAGGTCGCGCAGTTCGCAGCGTTCCTGCGGGGTGAGGTTCATGCCTGGCCACCCCCGTCGTCCTGGTGGTGGGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCCTCCAGGGGTGATGAGTGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 14 3425528-3426517 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 3425528 28 71.4 137 ....TG....T...G.A....T.C...G TCGGATTCTCCGTGCTCCCATGGGGATGTGTGCACAACAGTGGAGCGGTATGGTCAGATCCTGACCGCATTCGCCGGAATACCGGCTATGTGGAATCTCAAAACAATAACGGCGCACATTGCTGCAGGTGGTAAAGG C [3425551] 3425694 28 100.0 33 ............................ GTCCATCTGGGCGAACGCGATTGCATCGGCCGC 3425755 28 100.0 34 ............................ CGCTGGCTAGCCAGCAAGCGGGCACGCCACATAG 3425817 28 100.0 33 ............................ GCGGGCGTCGGCGAGCGCGTCGTGGGCGTCGTC 3425878 28 100.0 33 ............................ GCCCCCGACGACATGACCGGGCCGGACATCGAG 3425939 28 100.0 33 ............................ GCTCCTGCTCTGCGTAGTCCACACACTGACGGG 3426000 28 100.0 33 ............................ GAACACTGAGCAGGAGAACTGAAATGAACGAGC 3426061 28 100.0 33 ............................ CGCGTTCGGCTCACAGTTCGGCTCAGCTACTAT 3426122 28 100.0 34 ............................ GGGCAGCTCGGGGACGGGGTGGTCGGTGCGCAGG 3426184 28 100.0 33 ............................ GTGGGGCAGTCTCAGCGCGACCTATGCCATGAA 3426245 28 100.0 34 ............................ GCAGGTCAGTTCGGCGGCGGCCAGGTGCTCGGTG 3426307 28 100.0 33 ............................ TCCCGCTCCCGAGCCCTGGTTTTTTCCCCGCTG 3426368 28 100.0 33 ............................ GCCTGCGCTGTTGCGGTATTGGTGAAGAGTTGT 3426429 28 100.0 33 ............................ TGCCCGGAGGCACCCGTGGAAATCCCCCTCCCC 3426490 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 15 28 98.1 41 GTGAGCCCCACGCACGTGGGGATGGACC # Left flank : ATGCGCAGCCCGTTGTCCAGGGACTGTTCCCACAGCGGCCGGTGGAACTCGAAAAGGTGGTCGCTGCCCCAGACGTCGTTGACGAGGACGTCGAGCCGGCCCTGCTCGTCGTCGATCCGCTGGACCAGCGCGCGCACCTCCTCGGGCTCCAGGTGGTCGACGCGCACGGGGATGCCGTGCCCGCCGGCCGCGCGGACGCGTTCGGCCGTCCCCTCGATGGTCTCGGGGCGCCCTACCTCGGAGGGGTTCCCGCATGTGCTGCGACCGGTGAGGTAGACGGTCGCTCCCGCACTTCCCAGCTCGACGGCGATCGCGCGTCCCGCTCCCCGGGTGGCGCCGGCCACCAGGGCGACCCTGCCGCGCAGACTGTCACGCATTCCCACGTTCCCTTCCTCGGGTCCTGCTTGCCGCATCCGTCCTACCGGCTCCCCCTGACATCGTGTGCCGGGTAGGCGCCCTCGCCAGTCGGTGCGGATCTGGAGATCCCGCATCTGGAGGAC # Right flank : CGCCGCTACGCTCCCGACTGCGGGGCTCAGTGGCGGTTCGTCGGGAAACCAGCCTCGGATAGGCGCTACTTGGATACGCAAACCTGCACGCCCGGGATCCCGTCATAGAGCGGGCGCAGGGGACGATCCTTCCGTGCCATGCGCCGCGTCCGCGAGGTCGACCAGTTGGTCACACGCGGATGAGACGGAAGTGTCATGGGTCGAGATCACAACGATCGCGCCGCCGTCGGCAAGTGTGCGCAGCATTGCGATGATCGTCGCCGAGTTGGTCTCATCCAGCGACGCTGAGGGCTCGTCGACGACGACGATCTGAGGGCGGTGGAGAATGAGGCGGGCGAAAGCTACACGCTGCTGCTCTCCACCGCTCAACATGTGGATCGGGTCTTGTTCCCGACCGCCGAGGCCGACCTCGTGCAGAGCATCCGAAATACGCTGACGCCGCGTGCTGCCTCGCAGGTTCTTGTTTTCCAGCGCGACTGCGAGGTTCTTTTTGATCGTCC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.67, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 15 3450636-3450422 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3450635 30 96.7 31 .............................T GCGCGTGCCCGCACCGCGCCAATCCGACCAG 3450574 30 100.0 31 .............................. TCATCCCCGCCGTACTGGGTTGTCCCTCGGA 3450513 30 93.3 32 .........G...................G CCACCGGAACGGTCACCCCGGCCGCCGGGGAG 3450451 30 90.0 0 ................T........G..G. | ========== ====== ====== ====== ============================== ================================ ================== 4 30 95.0 32 ATGCTCCCCACGCACGCGGGGATGGACCCC # Left flank : AACCAGCTGCGCCGTAAGGCCGAGCGGGCGCAGAAGAAGGCAGCGTCCCAATCCTGAACCGGAGCGGCACTATGACGCCCGACTCCATAGGTACCGACCCTCCCTGCGGCCCCCGTGGGGAGGGAACGGCGCGCAGCGCTGCGACGCATCCGGTTCCAAGGTGAGCCCCACACATGTGGGATGGACCCTCGGTATCCATTGCGGTGTGGGTAGTGACCTCGTGAGTCCCACGCATGCGTGGATGGGGCCGGGTGAGGTCACCTGTGAGCTGTGCTGGCAGCGGGTGCGCACACGGGCGGGTGTGTGGTCGCGTTCTCGGCCTCGGTGTCCCACCGGGGGCGTGCGTCGTGAGGACGGATGTGGTCTCCTGACCCCGTCGCGGTGGTGGATGCCGCGCCACCTGGCAGCGATCCGTTTTGAGGGGTGTGCGTGCTATGTCCGAATATCCAGAAGTTACACACACGGGCATGCGCGCGACCTAGAAGACCAGGTCAGAGAGG # Right flank : TGGACCGTGGGCCCGACGGCACCCACCGCAAGCGTCGTGCGGGTGACCCCGGATCATCGGGGTCACCCGCACGGGTCGGTGGTTCACTCGCTGGTGGAGGCGTGCTCCCGCGTGGTGGAGTGGCCGTCGGGTCCGGCGTGCCCGTTGGCGGCGAAACCGGGAACGGACTCCCGTTCGGTCCCCTCGTCCGAGGCCGCTTCTCCATCGGTGGACCCGTCGGTCTCCGTGTCCTCGGTGGGGGAGATCTCCAACTGGAAATCCCCGTCGTGGTCCTGGGCTCCGGCGATGACGGCGGCCGTGACGACCTCCTCGCCCTTCGCCGACCGCAGCACCACCGGGTCCCGCTTGAGGTCGCGGACCAGGGCGAAACACATCAGGATGATGATGATCGCGAACGGCGCGGACACGATGATGGTGAGGTTCTGCAGCCCGGTGAGCGCGTCGTTGCCGCCGGCGAGCATCATGATCGCCGCCACGGCGCCCATCATCAGGCCCCAGAA # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCACGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 16 3480240-3479267 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3480239 37 100.0 35 ..................................... CGGAATCCCTCGGGACGAGCTGCTCAGTCGCATGC 3480167 37 100.0 33 ..................................... TCCGAATGCTGCGGCCGCTGGTGTGATTCCCAC 3480097 37 100.0 37 ..................................... CACCGCCGCAAGCATCTTGCCGGTTCCTTCCGGTGGG 3480023 37 100.0 33 ..................................... GGCCCCGACCACGCCGAGCTGCTGGGAACCAAC 3479953 37 100.0 37 ..................................... TCTGGAGGGAAGGTCATGGGTCCTACCTGGTCATGGG 3479879 37 100.0 36 ..................................... CCTCGCTGCTGACCAGGTGGGAAGCGTCAAGCATGA 3479806 37 100.0 37 ..................................... TAGCCTCTCCGCTGCGTGCCGGTTTGCAGTTCCCCGC 3479732 37 100.0 34 ..................................... TGCCTGCCATGGTCACACGTCCGTATGCGCAGTT 3479661 37 100.0 35 ..................................... TTCCGCGACGCGGACCAACCTGGCGGCGGCGCGGC 3479589 37 100.0 33 ..................................... GTTCGCTCATCGTTAGGTCCTCCTAAGTAGCCC 3479519 37 100.0 37 ..................................... CTGTCGAATCGCGTTCCAAGCGTCTCGGAAACGCCCC 3479445 37 100.0 33 ..................................... CAGGGGGAGTGCTCTGAGTCCGCGCTGTCGGAT 3479375 37 100.0 34 ..................................... CTGCGCGGCCGCGACGACTACACGAACGCGAACT 3479304 36 83.8 0 .CCT..........................G.-..T. | A,C [3479273,3479276] ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 98.8 35 GTTGCATCCGCTCTTCGGAGCGGATGAGGATCGCAAC # Left flank : CATGATGGAGGCGTTCCCGGTCCGCGTCGCTGAGGTCGGGACGGACGGTCAGCCGTTGCCGCTTCCCCTGTGCGGGCGTTCCGGCGTCGGCGCGGGCGGCGTTCAGGTACACCTCGGCGCCGCGCGGGGTGAGGACCCAAGCGGTGTGACCGGAGTGGAACTCCGCCAGCCCTTCCCGGGTGAGCGAACTCCCGACGCGGGTAGGTGTGGGTCCACGCAGCGCCAATGTCTGCGGTGCCCCGGGGACGGCCCAGCTAGGCGACGTTCACCGAGTCGATCCTTCGTACTTTCCCGGAACCAACGGAAGATGTCCACGAGGGTCGAGGCATCTGTACGATAATGGCTGTCTCCAAAGGTCTGGTGGGACCAGCTTAGGAACCGGGAGTGGTCATGTGGTTCCGGGGTGGTTCTCAAGCAAGAATCGGACAGTAAGGTAGCAATCTCATGGGCATGGTGAACTTTGTTAAGGGAAGCGATGGCGTTTTCCCTGGTCACCTGCC # Right flank : AGGGTGCTGCGATTCCCGGCATCAAGTCCTGGGGTGCCCTGCGGACAGGGCACCCCACCCGGGGCGTTATTTCCCTCGCTTCGTGTTCCCGGAATCCGGTATATAGGCAGGGCGGTTTCAAAGTCGGGTGCGGATGATGGCGGAGCCGGTCACAGCCCTGTAGCGATCCAGAAGAAGCCCGCACACACGACAACGGAGCCCGCTAGAAGAGCAGGGACTCTCACATCTCTGACTTCCAAGGGACTCCGTTGCGCCTTCAGTCTGCCATGCCCTCGTCCGCCCTGGCCGCGTCCGCGACGCCGATCCTGCCCGCCGAGGACAGTGATCCCCGCGACCGGCGGGGACGCCGCCACCCGCTGAGCTGCGTGATCCTCACCGGTTTGTGCGCGGTGCTGGCCGGCGCCCGCTGCCTGGCCGCGATCGGCCAGTGGGCCGCCAACGCGCCCCAGCACACCCTCGCCCGGCTCGGCGCCCGCATCACCGACCCCGCCCTGGGCACC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCGCTCTTCGGAGCGGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.60,-13.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 17 3684376-3684584 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================== ================== 3684376 25 100.0 36 ......................... ACCGATGGCCGACCGCACCCAAAGTTCGGTGGTCAC 3684437 25 100.0 36 ......................... ACCAGTATGCGTAGCCGCTGCAGTGAGCAGCGTTAC 3684498 25 100.0 37 ......................... ACCGACGCGCTGCCCCAACCGGGCACCATGATCCCTG 3684560 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ===================================== ================== 4 25 100.0 37 GTGAGCCCCACGCACGTGGGGATGG # Left flank : AGGGGGGTGGTGACACGTGAACCTCACCCCGCAGGAACGCCGGGAACTACTCGACCTGCTGGAGCAGCTCTCCCAGGCCATAGACGGCAACGCCCTGTGGCCCGGCCAGATACGCGACATCCTCCGGGAACTGCACGCACGCGTGGTTGCCTGGCTCGGCGACACCGACGAGAACGGCACCGAGAACCCACCCCCGCCCCACCACGACCAGTAACTGTTTCCTCGGATCCCGCATCCGGCCGTTCCCCGGGTGCGGGACCCGCCGCTGGCGCCGAGATCGGAGAAAACCACGTATGTGCCCCGCGCGATACGTGGACAACGACAATGTCGGCACACACGAGCCGTGCCACCAGCGCGAAACCGCGCCTTCCTCTCGGCTCACATGGGGGTGCGGTCTCAGTAGCAAGACGGTACGGTCAGATCCTGACCGCGTTCGCCGGAATACCGGCCCTGTGGAATCACAAAAGAATAACGCCATGCGTTCTCGCAGGTGGTGGCCT # Right flank : GGGCCGGGCGAGGTCACCTGTGAGCTGTGCTGGCAGCGGGTGCACACACGGGCGGGAGTAGGGGGCGCGTTCTCAGCCTCGGTACCCGACCGGGGTCGCGCGGAGGTGTGGTCGGCAGGGCGTGCGTCGCAAGGACGGATGTGGTCTCCTGGCCTCGTCGCGGTGGTGGAGGCCGCGCCGCCTGGTAGTGATCCGTTTGTGAGGGGTGTGCGTGTTATGTCCGAATATACAGAAGTTGCACACACGGGCATGCGCGCGACCTAGAAGACCAGGTCAGAGAGGATGCTCCCCGCGCACGCGGGGATGGACCCCGCACGGTACCAGTGAGAGGGAACTGCTGTCGATGCTCCCCGCGCACGCGGGGATGGACCCTCGCTCCCATAGGTGCGCCGGGCCCGTGGGGAATGCTCCCCGCGCACGCGGGGATGGACCCCACCCCGGCGACACCCACCTCGCCGGACTCTTATGCTCCCCGCGCACGCGGGGATGGACCCCCACTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 18 3684866-3685201 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3684866 30 100.0 31 .............................. GCACGGTACCAGTGAGAGGGAACTGCTGTCG 3684927 30 96.7 31 .............................T CGCTCCCATAGGTGCGCCGGGCCCGTGGGGA 3684988 30 100.0 31 .............................. ACCCCGGCGACACCCACCTCGCCGGACTCTT 3685049 30 100.0 31 .............................. CACTCGTAGTCACCGCTGACACGGTCCGGGC 3685110 30 96.7 31 .............................G CCAGGGCCGCGAGGTCCCAGCTCAGCGCCTC 3685171 30 86.7 0 .......................ACG..T. | C [3685174] ========== ====== ====== ====== ============================== =============================== ================== 6 30 96.7 31 ATGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : GTGGTGGCCTGTGAGCCCCACGCACGTGGGGATGGACCGATGGCCGACCGCACCCAAAGTTCGGTGGTCACGTGAGCCCCACGCACGTGGGGATGGACCAGTATGCGTAGCCGCTGCAGTGAGCAGCGTTACGTGAGCCCCACGCACGTGGGGATGGACCGACGCGCTGCCCCAACCGGGCACCATGATCCCTGGTGAGCCCCACGCACGTGGGGATGGGGCCGGGCGAGGTCACCTGTGAGCTGTGCTGGCAGCGGGTGCACACACGGGCGGGAGTAGGGGGCGCGTTCTCAGCCTCGGTACCCGACCGGGGTCGCGCGGAGGTGTGGTCGGCAGGGCGTGCGTCGCAAGGACGGATGTGGTCTCCTGGCCTCGTCGCGGTGGTGGAGGCCGCGCCGCCTGGTAGTGATCCGTTTGTGAGGGGTGTGCGTGTTATGTCCGAATATACAGAAGTTGCACACACGGGCATGCGCGCGACCTAGAAGACCAGGTCAGAGAGG # Right flank : CTCCACAGACCACCGAAACCACCCGCCCCGGCGTCAGTCCCGGGAAGCGGGGCGGTAGTACCACCACCACTGGTGGACGGTGTTCAGCAGCGGCTCGAACCCCGGAGCCGGGTGGGTCGCCGGTGAGACCGGCGCGGGCAGGGTCGTGGACCGGCCGGAGGCCAGCGTTACCTCCACCGTCTGGAACCGCCCCCGGAGCCGCGGCCGGACACCGGTGACCTCCCTCCACGGGATCAACCGTTCGCGCAGCTGGTGGACCATGATTCCGTCCGGCCGCAGCCGGGTGTGGGCGTGCAGCGTCAGGTGCCGGTTCAGCACTCCCGCGGCGCACAGCACGAGTCCGCACAGCGTGTAGGCGCTGTGCGGCACCAGCGAGAGACCGGAGGCCGCCTCACCGCCCCAGGCCAGCGGCACCAGGATGATCCGCGCGACACCCGCGGCCACCTGCAGGAGACCGAACGCGAACTGGGCCCAGGCGAGCCGCACCATCCCCCGCCGCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 19 3798089-3798482 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQC01000001.1 Haloactinospora alba strain DSM 45015 Ga0197529_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3798089 37 86.5 36 G...T..............T...CG............ CAGGGTCTTGTCGGAGAATTCGTAAGCGGTCCAGGT 3798162 37 100.0 36 ..................................... CGTCCGGGGTCTCCCAGCCACTGATGATCCCCCGCG 3798235 37 100.0 35 ..................................... GGTTTTCGTGCCGCGGGACGCGTCAGGAGGTGGAT 3798307 37 100.0 32 ..................................... ATGACCGTCGATCGGGCGGTCAACGGCATAGA 3798376 37 100.0 33 ..................................... CAGCCGCACGTGTACTGGGCCATGGACGGCGGT 3798446 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 97.8 35 CCTTCAACGGTGACGGCCTCCAAGAGGCCGTGGATAC # Left flank : CGAGTGCGCGGCGGCGGTGTCCGGTTCCGCGGCTACGGTGCCGGTGTCGACGGCCATGGTGCTGGCTCCAACCAGAGAGACGGTGACTGGCTGGGGATGAGGTCGGGCCGTAACCGGACCGAGCCACGGGTCGCCCAGTGGCAGCGTCTCCTGATCGCGGCGCGGCGGCCCTCCCTCGAGGCCCCGTACGGTGCAGGACGTTCCTGCACACCGGTGGCAGGTTTTCGGGCTCGCGGGCGTGGGAGGGGTCCTCCCGTCCTAGGCCGCGGCTTCCCGGGCGCTGCGCGCCCAGTGCCTGTTCGGCGGCCGTCGTTCCCGCTTACCGCTGCGGGGCAGCCCCGGATTCACACCGGGTTCCCTGTCGCCTCGCCAGGAGCGTCACCCCTGGCGAACCACCAGCACGAGCGATACTACATCTGGTGTCGACTGCAAGCGAACGACGCAAGATGAGCGTGTCAGGAAAAACGATGAGCGGAACGCACCTGGTGTGACAGGACGGG # Right flank : CGGCAGATGACCAGGGGAAATGCATAGAAGAAATCGAAAGATAGCTCCTGAACCCCACGTCTCTGACCGTTTTGCCCCAGATTATGCTTGGGAACCTCCCCGGGAATCGATGACCACTCCCGGTTCGCGGTACTGCCACACCCCCATCATCCGCAACAGACCACCACCATACTCACACCACCCACACCGGCGCAGGCACCAGCGAACTGCGCTGGTAACACGGTCCGCCGCTCGGAGCCGAAGTGGGATTCATCGCTGGGAGTGTGACATCCAAGTCGCGATCGAGTGTTTGTGGCCCTCAGGCATGGCGAGATTGGTGACCTCAGCGACGGGAATCAGAGCAGCTCCCTTGTGTTCGTGAGAAACCGCAAAGGCGAGCTCGTAATGGCCATCCCCATCGATAGCAGGAACCAACCTGGAAGCTGGTACTTCCGCGTTCTGTCCGGACCCCACTGGCCTGGACATCTTGCCACTGACCTTCAAGACGCTCCATTGCCCTC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCAACGGTGACGGCCTCCAAGAGGCCGTGGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.40,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //