Array 1 99-719 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEGV01000222.1 Paenibacillus ihbetae strain DE0082 NODE_222_length_807_cov_11.623288, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 99 33 97.0 32 ................................C TCCCTTGTGTCGCACTCCATCAGCCCTGTGGG 164 33 100.0 32 ................................. GACGTGCTCAGGAAAAACTTAAAGGGCGATAT 229 33 97.0 32 ................................G ATTCTGAGCATGAACATTAAGATGGCCCATAC 294 33 100.0 33 ................................. GATGTGTCATTGTGGCCGTGAACCTTCCATCTG 360 33 100.0 33 ................................. TTTTGTATTCGGACACATCGGCATAACTTGTCC 426 33 97.0 33 ................................T CCAAGCACCATTTGTCTAAACTATCGTCGTTAT 492 33 97.0 32 ................................T CTGATACAAACTTCTTTATGCTGCCGTACCCA 557 33 97.0 32 ................................C CACATGAGATTATGGGGGATCCGGATGAACTC 622 33 100.0 32 ................................. CGATTGGCTAGACGTCCGAGAGGGATATTTGT 687 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= ================================= ================== 10 33 98.2 32 GTCGCACCCCACGCGGGTGCGTGGATTGAAATA # Left flank : TTTCATAGACACAGGCTCCCTTGCTCAAGTTGTTGAATCTAGTATAATCTGTGTCTACTATTCAGTCTAACTGCATTAATGGTTATTGGTTGCATCGTG # Right flank : ATGATATAATTATCTATTTAGCCCCCATTTAGACTTGGACAGTACACCCCTTACTTAGATACAATGAAATCAAGCGGAGGGGAACACA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 103-807 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEGV01000115.1 Paenibacillus ihbetae strain DE0082 NODE_115_length_13366_cov_9.711942, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 103 33 100.0 35 ................................. AAGATGGAGGGGTTGTGCAGGGACGCCGAGGGGAG 171 33 97.0 33 ................................C GTCCGGTAAATGTCCCCCATCAAAGTCTCTTGT 237 33 97.0 36 ................................C CAACTGGATGCCGCCCACGGGCTGACGATATTAATG 306 33 97.0 36 ................................C CAACTGGATGCCGCCCACGGGCTGACGATATTAATG 375 33 97.0 33 ................................G CTACGCCCCTTTTCGCTCCCGCTCAAAACAAAT 441 33 97.0 33 ................................T CCTGCTTCAAATCCGCGCTGCCGGAGCGCCATC 507 33 97.0 33 ................................T TCGAAGTGATATGCAAAGAATTTTGACGACAAA 573 33 100.0 34 ................................. ATTCTGCATTTTCTTGCTGTAACGTGGTTACCTT 640 33 97.0 34 ................................G CCGAACTGGATACAGGTATTCGCTCGATCCCTAC 707 33 100.0 35 ................................. TCCAGGTGCCTGCGCAGGACGGCAGAGAGCACGGA 775 33 84.8 0 ..........G.CA.....T.C........... | ========== ====== ====== ====== ================================= ==================================== ================== 11 33 96.7 34 GTCGCACCCCACGCGGGTGCGTGGATTGAAATA # Left flank : AATGGCAGCAATTTAAAGCAATTCTACAATCGATATCGAATAAGAGGTGCAGTGTCCACAATAAGGGTGTTTAACCGTTATGACCAGAATGAAAAGGGAGGAG # Right flank : ATCCAAAAGAGGAAACCAGACAGGCAGTATTAGGGGCGCCTCCACATGCGTAGGTGCATGGATTGAAATACGTAATCGAAGTACTGGATCTTATATCCGGAACAACGCGCCCTCTTTTTCGATCCTCAACGGAACAGAGCGAATATGAAGTGGAGGTTGCTTCATATTCGCTCTGTTTTTGCGTCAATTATAGAAAGTTTTATCAAAAACTCGTTGATCTGACAATTTTTTTCTTATTATCGTTCGCTTTATTATTGTCTTTTGAATTGACAACATTAACTTTCTCACCGAATAATGGCTGGCCCTTCTACAAGCCTTCCTAGACTAGTCAGTTCACATCGCCCGAACGCCATGCCCTTACTACACCACCTGTGACAGCACAAGTCCGCCGTAAGCGAACGCAGCCACAATGACGATCGCCGGGTGAATCTTACGCATATTCATCGCCCAGAAGGCGACGGCGGCGATGCCGAGGGATTGCAGCAGCCCGATGGAGATGA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 658-93 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEGV01000121.1 Paenibacillus ihbetae strain DE0082 NODE_121_length_12489_cov_11.045440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 657 33 100.0 32 ................................. CGTTTTGCCCCCCCTTACTGAAAAAATAGCCC 592 33 100.0 35 ................................. TGACCCTAACCAGACCGACCAATTCATCATATCGC 524 33 97.0 34 ................................T CTTGACCATCTTCGCCAGGCGTTTAGAGCAGCTA 457 33 100.0 34 ................................. TACTGATATTGCCGCTCGTATCTACAGCCACAAC 390 33 100.0 34 ................................. AGGGGTCGGGAATCGAAAACGGCTTAGACTCCGT 323 33 97.0 33 ................................C GATGAGCTTCGGAACGTACGCAATAGCAAGGCC 257 33 97.0 34 ................................T TACCGTTGTACCGTACATTGTGTTAGCTGTTATT 190 33 100.0 32 ................................. TCAACCTCGACATTCTCAGACGCCCGTTCATG 125 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 9 33 99.0 34 GTCGCACCCCACGCGGGTGCGTGGATTGAAACA # Left flank : TGACGAATACCCTCCATTTCTGTGGAAGTAGGTGATTATGAATGCTGGTAGTGATTACTTACGATGTGAGTACGGTAGATGCGGCAGGTCAGAGAAGGCTGCGTCAAGTGGCCAAGGCTTGCCAAAATTATGGACAGCGCGTTCAGAACTCCGTATTTGAATGTATCGTGGACGCCGCGGAATGGGCCGCGCTTAAAATTAGGCTGATCGAATTAATTGATCCCGAGCAGGACAGCCTGCGATTTTATCAGCTGGGCAACCAGTATAAAAACAAGGTGGAGCATGTGGGTATCAAAGCCTCTCTCGATTTGGAGGGGCCTTTGATTTTGTAGTGCGAATGTGAAGCGAACATGAATTTCCCGGGAGATTCGCACCAAAATGATTGGATTTCATTTGAAATGAGGTGAAATATATCCACATTCTTTGTTTGAAAACTGTATCGAAATTATGTTACTAAATAAAATTTGTAAATTACTTGCTATATTCTGTTAAATATCGGT # Right flank : ACGTTGTTAATCGAAGTGGACCTCTGTCAAGATAGTAGACACAGATTTTTTCCTACGCCGCCCGACGGGGGTACATATGTTCGAATTCGGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 12371-9758 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEGV01000121.1 Paenibacillus ihbetae strain DE0082 NODE_121_length_12489_cov_11.045440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 12370 32 100.0 34 ................................ CTCGATCCGAAATGGAATTTGTCCGTTTTCGAAA 12304 32 100.0 35 ................................ ATCATGGACATTTCCTCTCTATCATCGATTTTGTT 12237 32 100.0 34 ................................ TTGTCGATGTTTTTGTAAGTGTTATGCGTCCCGT 12171 32 100.0 35 ................................ GATGACGCCCTCACGCTTTGATCCGACGTATCCCG 12104 32 100.0 36 ................................ TCGACTGAACAATAGATTTGAGTGACACCACGAACG 12036 32 100.0 33 ................................ TCGATCAGATTACACCAACCAAAGATTACCCGT 11971 32 100.0 33 ................................ TTAAAAACTATGACGTATATGTTAACGGCGTTA 11906 32 100.0 35 ................................ GTCCAGCGCTATCTTTTAAGGGTTGGTTTTGCCCT 11839 32 100.0 35 ................................ CGTATCCATTGATAAGCCGATGATCCGCGTATTCA 11772 32 100.0 33 ................................ ATTGTGAGGGTATTCGCCCTGATCGGCGGCAAT 11707 32 100.0 34 ................................ AGTATCTGGAATGTTCAGAACACGATAGTTATAC 11641 32 100.0 34 ................................ AGTTGGACTTCTAAATCAGCCGCAAAGACTGATT 11575 32 100.0 34 ................................ GAAATCGGTGCCGCAGTCGGCATCTCGCTGCTTC 11509 32 100.0 33 ................................ ATACGACCAGCCGATTATCTACGATATCAAGGC 11444 32 100.0 34 ................................ CTTCATAAAAAATTTTGATATGGCCTAACATCAT 11378 32 100.0 36 ................................ GACATCGCGTCCAGTTAAAGAACCATCGCCTAAATC 11310 32 100.0 34 ................................ TCCGCCAGCTTTTCCTTATCTTCCTTGCTCAGGT 11244 32 100.0 35 ................................ TCAATCTTGCCTACCGCACGGCCCGTATCGTCTTC 11177 32 100.0 33 ................................ CGCGATCTTTCAACCTTTTTGCTCGTACTACAT 11112 32 100.0 34 ................................ TGCAAAGACTCTTCATTCCAGCGTCGCTTTCCAG 11046 32 100.0 34 ................................ TCGTTCCTGGGCGCGCTGCTCGTTGGATTTCTTA 10980 32 100.0 37 ................................ AGTCTCTTTCCAATCTCGAATACCGACTGCCCCGCAA 10911 32 100.0 34 ................................ AATGTGATTGCGGTAAAATCCATCCAGACCGGAC 10845 32 100.0 34 ................................ CATCTGGATTTATATAACCCTTCTGCCCATCCCT 10779 32 100.0 35 ................................ AATTCGCGTACTTGCTATAAATCATGGTGGATATC 10712 32 100.0 35 ................................ ATTATGTATCAGCAACTGAGGGATTTGACACATCA 10645 32 100.0 33 ................................ TATAATGCCAAGGATAAATTGACTCAGGCTTAC 10580 32 100.0 36 ................................ ATGAGATGGAAGCAATTCAAAAGGCTGCCTACGATT 10512 32 100.0 33 ................................ CGTGATATACCCTTCGCTGGATTTGCTCCAGTC 10447 32 100.0 34 ................................ ACTGACTCGGAGGAATGGATCGCGAAGGAAGAAC 10381 32 100.0 34 ................................ CGTCACATTGCCTTGGCTGGCCGAGGGACAAATG 10315 32 100.0 34 ................................ TTTACGGAGTTTCCTCAATCGATTCCCATCGAAC 10249 32 100.0 34 ................................ ACTACAGCTGGAAGCGGTCTAAGGCGTCGTCTAG 10183 32 100.0 33 ................................ ATTTTCATTCGCTCCTTTTTATTTAATCTCTTG 10118 32 100.0 34 ................................ GATTTTGATGATGAGGATGACGACGCCTATAAGA 10052 32 100.0 34 ................................ TTTTTGGAGGCGTTCGGCAAGGCGTTCCTGAGTC 9986 32 100.0 33 ................................ CGGGCTATGGATGACGATGCCGTTGAGTTTGGA 9921 32 84.4 34 ...A...TC.......A..............A CGGTACCCGTTTGCGTTGCTGTACTCGGCGTATG 9855 32 93.8 34 ..............A................G CCGACCGCTCCCGGATCCTTGCCGCCGTGACCGG 9789 32 90.6 0 ....T...C..............A........ | ========== ====== ====== ====== ================================ ===================================== ================== 40 32 99.2 34 GTCGCACCTTACGCGGGTGCGTGGATTGAAAT # Left flank : CGGGCATTCTCATTGAATGCAACCGCCATCGTTTGTTGGACTGACTGTCAAGCACTGATTTTTAGATTGAGCCTAAATAAAATTAGTAAATTACTTGCTTTATTCTGTTAAATATCGC # Right flank : ATAGGTATGCATTTTGAAAGTGGACAGTCCATACGAGGCTGTCTTTTTTTATAAGTGGAAGGTGTATTTTGGTGTTAGGGTCATAAAAGGAATGAGACAATTTTATGAACTTAGAAAGAGAAACTAGAAAAATGTAGAATATTGGAAGGAAATGAAGAAGGGGTGAAGAAGTAGTAGGGAGGTGGGTCTTAAGGAGTGTTTCGAATTTTGATCAGGAGAGTCGTTTGGACTATCCTTCGGCGAGAGGAGACAGGCAATGGGATACATAGCTCATATACGTGAGAGTGACCGGGAAAATCAATTACTTGAAACACATTTGCTTGGGGTCAAGAATTTAGCTGAATCATTTGGTTCGAAGCTCAGAATTGGGCATATTACCGGTCTGGCTGGAATGCTTCATGATATGGGGAAGTTCACGAAGGCATTTTTGGAATATCTCATCGAAGCGGTGAATAATCCAGAGGCCCCTCCAAAGCGCGGAAGTGTAGATCACTCTACGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 100-1392 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEGV01000188.1 Paenibacillus ihbetae strain DE0082 NODE_188_length_1474_cov_11.466714, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 100 33 97.0 33 ................................G ACATCGCGTCCAGTTAAGGAACCATCGCCTAAA 166 33 100.0 33 ................................. TTTTTGCCAGATTCTGAATCAAATCACGAACTG 232 33 97.0 35 ................................C TGCCTTTGTATGCTCTTGGCAAGGTGGTGAGGCCC 300 33 97.0 32 ................................T ATGTAACAACAACCTGCGGACGCAACTTTGTC 365 33 100.0 33 ................................. ACACCGGCAGGTAGGCTTGTGCTTCAAATGTTA 431 33 97.0 32 ................................C TTGATTGCGGTCTTATCGATCTTGTTAACCTG 496 33 100.0 33 ................................. TTTGCTAACAGATCATTTCCAGCGCCGTGCATT 562 33 97.0 32 ................................G ATTTGACTTGCAACTGATTTTGGACTCGTTGC 627 33 100.0 34 ................................. GCCAAAAATGTTTCTTAACTTCCATCAAATCCTT 694 33 97.0 34 ................................T GATATAACAATACCTACTAACATAAAATTAATTT 761 33 100.0 33 ................................. GTTACGGTTCCAAAGGTAAAGATATTGATTTTC 827 33 97.0 32 ................................G GATATATGTAGAGGTAAATTAGTTATGCGTCC 892 33 97.0 36 ................................G AAGAAGCTGACTTCATTCAGGTCGTCACGTTCAAAA 961 33 93.9 32 ...............................TC GTCATGTCATACACTTCCTCCCCTGTCCGGCT 1026 33 97.0 34 ...............................T. GGGTCTGTTGCAGTCGGACAAAGGGATGTACGGA 1093 33 97.0 33 ...............................T. TCGAAAATTTACCGATCCAGCGGCTGGCTGGTG 1159 33 93.9 32 ...............................TC GCTGAGGCCAGCCAATGCGGCAATAATGGTCG 1224 33 93.9 35 ...............................TC ACAATCGGAAACGCGTTTTGGTGAGTACGCCGACG 1292 33 93.9 35 ...............................TC CAATATCGTCTTCAATGATCCCTCCGGGCTTGATT 1360 33 97.0 0 ...............................T. | ========== ====== ====== ====== ================================= ==================================== ================== 20 33 97.1 33 GTCGCACCCCACGCGGGTGCGTGGATTGAAACA # Left flank : TTTTTCATAGACACAGGCTCCCTTGCTCAAGTTGTTGAATCTAGTATAATCTGTGTCTACTATTCAGTCTAACTGCAAAGTTTAGAATTTTTCTCCGGCG # Right flank : TTGAATGGACCTCTGTCAAGATAGTAGACACAGATTTTTTCCTACGCCGCCCGACGGGGGTACATATGTTCGAATTCGGACG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //