Array 1 249130-249492 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QQKH01000002.1 Haemophilus haemolyticus strain M25342 M25342_HUY4067A37_cleaned_ctg_5009, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
    249130	    32	 100.0	    34	................................	TTTTCTTCCAGTTTACGAATAATCAAACTGGCTT 	
    249196	    32	 100.0	    35	................................	CACACGCTTTTGCCTAAATTTAGCGATGATCCGAA	
    249263	    32	 100.0	    34	................................	TCCCTATACCCATAAACATTAGTAATGATTTTGG 	
    249329	    32	 100.0	    34	................................	CGCGATTTAAAACTCGCTCACACATACTGTTACT 	
    249395	    32	  93.8	    34	.....T.......A..................	ACCAAAGGCCAATATTCTCACTGCGAGATTGCCA 	
    249461	    32	  90.6	     0	......A....T.........C..........	|                                  	
==========	======	======	======	================================	===================================	==================
         6	    32	  97.4	    34	GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC	                                   	       

# Left flank :   TTGATGAGATAAGTCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGCCGTATCGCAAAACATTGCTTAGATTACGGCGTGCGAGCACAATATTCAGTATTTGAATGTGATGTCACACCTGACCAGTGGGTTATGTTGAAAAACAAACTGTTGGAAACTTACGACCCCACGTGTGACAGTCTGCGTTTTTACCACTTGGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTGGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGACAATGTGGCCGTTATACTGACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATCTGCTGATTTTTCTTGCTTTTTTATGTAGGGA
# Right flank :  CTGTAATCACAATCAAATTACCGTTATTAATACGGGCAGCTGCGTATTTAAGGAAGGATGAAAGAAGACAAAACGACTATGTCAGTAAATGGATAACTTAACATTTAAATACAAAAGAGCGGTCAAAATATAATGATTTTTGGCCGCTCTTGTTTATATGATTTTAATTCAACTAATTTAAAAGATTAACATGCTCTAAAAATTCTTCTTCTGTTAATACTGTAATATTTAGTTCCTGTGCTTTTGTGAGTTTAGAGCCAGCAGCGTCACCTGCGATGACAAAGTCTGTTTTGCTGGAAACTGAGCCACTTACTTTTGCACCTAGCTGTTGTAGTAATGCTTTTGCTTCGTTGCGACCCATTTGAGTGAGGGTGCCGGTGAGGACGACGGTTTTATCTTTGAATAAGTTTTCACTGGCTTCTTTTACTTCCACGGTTTCCCAATGTACGCCTTGTGCGATTAAATCCTCAACAACGGCAACATTATGTGCTTCACGCCAG

# Questionable array : NO	 Score: 6.13
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-4.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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