Array 1 149969-150777 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEV01000001.1 Gilliamella sp. Pas-s25 NODE_1_length_218432_cov_382.427324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 149969 28 100.0 32 ............................ TATAGAAAAAGGTTCTTTCAGAGCAAAAGATT 150029 28 100.0 32 ............................ AATCAGTTAGATCGTCTTCTGTTATATCATTG 150089 28 100.0 32 ............................ AGATTTTTTGAAACCGTCAGCTTCTTCAATGT 150149 28 100.0 32 ............................ AATTACAGGGCGGGGAGAATATGTTTTTTCTG 150209 28 100.0 32 ............................ TATGGTGAACGGGAGTACGGTTTTGAGCTCCC 150269 28 100.0 32 ............................ TATGGCTTTTTTCAAGAAAAATTATATGTTTT 150329 28 100.0 32 ............................ TCGTAAACTGCGGTGCAACATAACTGATTATT 150389 28 100.0 32 ............................ CAATGGTCAATACATCACCAATATTACGCGGA 150449 28 100.0 32 ............................ ACTAAAAAAGCACAAGAAAGCGATTTAGGGGT 150509 28 100.0 32 ............................ AAGCACAACAATTTCACCACTTTTTATTGAAA 150569 28 100.0 32 ............................ AATACACTTTCAAATGAAATATATCTTATTTA 150629 28 100.0 32 ............................ AGATCCTGAGTTATCAGCTAGATGGAGAATAG 150689 28 100.0 32 ............................ TGCAAGCGGTGACTGATCTGCTCGGTTCGTTT 150749 27 89.3 0 ...............AT.......-... | AA [150770] ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.2 32 CTTTAACGCCGTATAGGCGGTTTAGAAA # Left flank : AAGCACAAACACGCCAAACATTCCTGTTTGGCGTGTGACCTTATTTTGTTATCGGCACATTCTGACTCAGGAATAACAAAAGCAACATGGCCTTGGGTGTTTTTTATGAGTTGCTTTTTTTTATTAAAAAACAGTGCATCACTATCCAAAAAAATTGTCAGGAAAGGTATTGATTTTATTTGATTTTTTATTTATTTTCAAGAAAGTTCAACAGTTTACACAACCATGTCAGGACGCTAGTAACTAATCAATCCGCAAAACCAAAAACAGCATACCCAGATAAAAGCTATTTAACCTAAAAAAGTGGTCAGGAAAAATATTAATTTTATTTGATTTATTTTCTGTTTTTTTTGAATACACAATCTTACAAACCCTTTTTTTAGCGATGATTTAAAATTAAATAAAATCAAAATATTAAAAAATAGCTCAAAAAAAGGGTTTTCAAAGCCAAAATTGTTGTTTATCTTTATACAGAAAGATTTATCGAATCTTAAGTTCTA # Right flank : ATAATCAGATAATTATAAAAAAATAATAACCCCCAAAAAATAATTGGCTATGTTGTTTGTTTTACTTCGCGCGGGCTGGCGCAGGTCACATTTTTCAGTCAAAGCGTGGGTTGTTAGGGAATTTGCTAATTCTATAACTCGGACGTGATCGCTATATTTATTTTGAACACTAAACTGCAAACGTTCGCTCCCCAACCCTCCACATTTAATCCATTCTATTCTGAAAAAAAGCTTTATTTTTTACCAAAAAATAGGTCAGGAAAGGTATTGATTTTATTTAATTTTTTAATTGACTGTTTTGTGAGGAAAACAAACTAAGGTTATGTCGATAGTAAGATAACAGGCAGCATATTTATAATTATAAAAAGTATAAAAGCCATTAAATTATAGAAACCATTTCCCCTGATAAAATAGGCAACAGGCGGTGATAAAATTGCGATATGGATGTTGCCACGGTGAGCGTAATTGATATTGTTAGGGAATTAATCATTTCTAATTAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACGCCGTATAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 2305-1798 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEV01000037.1 Gilliamella sp. Pas-s25 NODE_37_length_21632_cov_328.609551, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2304 28 100.0 32 ............................ TAGACCAATACTTGATGACATAATCGGTTTGA 2244 28 100.0 32 ............................ GTTATATAAGACTGGGTCGAATAAGCTAAACT 2184 28 100.0 32 ............................ GCAAGATGATCATCAAAATTATTAGCAATAGC 2124 28 100.0 32 ............................ TTATCTTCAACAACTCTATTGTTATATTTTAT 2064 28 100.0 32 ............................ GGTAGTGTTGGCTCACAGGCGCTGGGGAACGT 2004 28 100.0 32 ............................ ATTAGCTAATTCCTCTAGCTCGTCAATGATGC 1944 28 100.0 32 ............................ AGCACGCAAATAAAGATTACCGACATATGTTA 1884 28 100.0 32 ............................ AAACCGCCTCGACATCATCACAAAAATGATTA 1824 27 89.3 0 .......................T-..T | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : TATATCATAGCTGATTTGTTGTTATTTTTCTATCTGCGGGCTTTTTTATTGCTTGATTTTGAATAAATCTAAGGTTAATAATTTCTTCCATTTTTCACATATCAAAAAAACATCGATCTGGTCGCGCTCCTTGATTCTATTGCTGATTGAAAGTTGTTGATGAACATCATCCAATATCTTTTAAGAAAGATAGAAAATAAGTTAATTGATATAGGCTATTTTTCTATTTATAGGTAGATAAAATTCGAAAACGCTTAACGCTATTTTTAAGGTTTTTATTAAAAATCTAAGCAAATTGGTCTTTTGAGTTTTAGGTTTAGGTAGTACTACGTCATAATAAAGTCCAAAAACTAAAAACTAAAAACTAAAACCCTTTTTTTTGCCATATTTTAAAAATAAATAAAATCAAATAATTAAAAACTTCCTTCAAAAAAGGGTTTTTAAAGTCTAAATAGCTATTTGCCTTTTTACATACAATATTGATAGTATATTAACTTCTA # Right flank : TAATCACGAAACGGTATAGACTCCTGAATATTTTTTACAAAAATATAGCCTAAAACGTGACAGTTGTGTAACTACTTCATAATGGGCATACAACTTAGTAAAAAATTATGCTGCTTGTTTTTGTGTTGGATATGCAATGGGCATCATGTTAGTTAACGCTTAATTAGTTTTTTGGGTGTTATCAATGGTTGGATGACTGACCATAACATGTTTAGCCAAATTAATGACGGTTATTTTTTCTAGGGTATTATCGCCATAGCACTTGTTGATGATACGGCGATAATTTTGTTTTATGAATATTCATTACAGTCGTTTTTTAACTACTGTAACCGACGCGAGTGATTTCTACCATTAAATTAATAGGGTATTTTTAATATCTTCAATTGTTTTTGTGCCAGCTAGTTGCATGGTGATAGACAGCTCTTTATTAAGATGATCAAAGACTGATTTTACTCCCTCAGCGCCACCTAAATTCAGACCATAAAGAATGGGGCGTCCAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 72-1503 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEV01000033.1 Gilliamella sp. Pas-s25 NODE_33_length_25916_cov_367.763153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72 29 100.0 32 ............................. GACGACACGATTGCTCAAATACAACGGCTTTA 133 29 100.0 32 ............................. TACTTCATCGCCTGGTATATATCCGTGGTTGG 194 29 100.0 32 ............................. CGAACATGAACAATACATGATTAAAGATGCTT 255 29 100.0 32 ............................. TTAAACAAGAAATTGCAACAATGCCATTAACT 316 29 100.0 32 ............................. CGCACTCTAAGAATGCGCTTTGTTCTGTACTA 377 29 100.0 32 ............................. GAAATTATATATGTATAATAATAATAACTTGC 438 29 100.0 32 ............................. GAACGGCAGGAAAATTGGGGGTTAGGTCGAAA 499 29 100.0 32 ............................. ATTTTGGTGGGTAGTAATGTTAGTGCTGATAT 560 29 100.0 32 ............................. CAATTGAAGATTCACAAGAGCTGTACATTGCT 621 29 100.0 32 ............................. TGTGCAACAGTGCGTACTGGTGAATTAACTAA 682 29 100.0 32 ............................. CTAGACACACACATAACTACACAATAGCTAGT 743 29 100.0 32 ............................. ATAAATTAAAAGATGAATTAACCGATATATTA 804 29 100.0 32 ............................. CTCCTTTGGACTAATTCCTCCCGATTTTTGAT 865 29 100.0 32 ............................. CGTAAAAACTTCATCATGTTATGTTTTGATGA 926 29 100.0 32 ............................. TAAATGATGTTCCCTCTAACTCTATTGTAAAT 987 29 100.0 32 ............................. GAGTACTGAATGAAAATAGATTTAAAAAGAGG 1048 29 100.0 32 ............................. TGTTTTTTATTTCTGTTACTTTTTTATCTATA 1109 29 100.0 32 ............................. AGAACTTATCATTTTTTAAAAACTGGGCGACA 1170 29 100.0 32 ............................. CCCAACCTTTGACGGGGCAAGAGTTCACAATT 1231 29 100.0 32 ............................. CGAGAGAAGACAGTAAAGGCTCTTCTGCGGTA 1292 29 100.0 32 ............................. ACAATACAAAAGAAAAATCCTACTTAATTGGT 1353 29 100.0 32 ............................. CTCCGCCCGATGTGGGTTGTAACGCGTTATGT 1414 29 100.0 32 ............................. TACCTTGCTCCAGCAAAAGATTGGGATTATAA 1475 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 CTGTTCCCTATGCACATAGGGATAAACCG # Left flank : GAATAATTAAAAAAGTTGGTAGAAATTTAAACTAAAATATTTTAATTATAAAACAAAATGTTATAATTGGTC # Right flank : GGGACGAAAGGCAAACCTACAGTTACATCGACTGATTATTGAGTGTAGATCGGGAAGAAAAAGCATAAATAAAACTGCTGAACTATTGAATTGTAGTCCTGCAACTGTAAAAAAAGTTTGGGCTAAGCATAAAAAAGAAACTCTTAAATAATATATAATAAATAATATTTTTTATTTTTTATTTTTTTTAAATTTCTGTATAATTAACAAACTATATTAATGAGGATATTAATATGAAAATTTATTCAGATATAAAAGAAAACGCTATTAATCCAGATTTATACCCCGTTCCAGAAGATCTTTGGGTAACTGATCATGGCTACCTAAATGATGAATCATTTGATATTCTTGCAAAAAGAAGATTAACTGAAAAATTTCAAAAACAGAGTTATGTTAGAGAACTGGATAACGGCGAAACATGGCAGTTTAATCCCGATGGTACAAAGTTAATGGTCAGAGATAAATATGGAAAACGAGTTGCGTAAAAATGCAATTTTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCTATGCACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12044-12987 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEV01000033.1 Gilliamella sp. Pas-s25 NODE_33_length_25916_cov_367.763153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12044 29 100.0 32 ............................. CATGTTATAAATTGATACCCCCTCAAACATAT 12105 29 100.0 32 ............................. AAAAATGAAACAAATTCAATTAGCTCATTTAT 12166 29 100.0 32 ............................. TAAATTATCATCTTCATTGAAATCAGGCTCTA 12227 29 100.0 32 ............................. TGACGGTTGGACTTCAGGATAATACGGCAGAA 12288 29 100.0 32 ............................. GGCAACAATTTAACTTTATTAATTTAAATATA 12349 29 100.0 32 ............................. TCCAGAAGATACAGCAAGACAGCTTAGCGAAC 12410 29 100.0 32 ............................. GAGGTGCCAAGTGAAATGATAAAATTAACTTT 12471 29 100.0 32 ............................. CAGTTTCAATATCAAACAAAACTTTGTCTGAT 12532 29 100.0 32 ............................. CCCTTGCGTTAAGGCTTCATTTCGTTGTTTGG 12593 29 100.0 32 ............................. TAGTTGAAAGCATCAGAGATCATACAGATTTA 12654 29 100.0 32 ............................. GAAAAGGTGGAGTCGGAAAATCTTTCTTATCA 12715 29 100.0 32 ............................. CAATTAAGAAAGAAAGTTATTTTTATTTGTTT 12776 29 100.0 32 ............................. ATGGTGAAGATAGGATCGCTATTGTTAATAAA 12837 29 100.0 32 ............................. CGCAATAACAATGTTAACTGGTAAAAAGTTGA 12898 29 100.0 32 ............................. GATTTGAGGCTTTGGCAGAAGCTGCTTACTTA 12959 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 CTGTTCCCTATGCACATAGGGATAAACCG # Left flank : ATCGCAATTCAAAGTTCGTATCACTCTTTCCGCTTTGCCAGTCGTTTGTGAGCAGGCTGGTTTGGTAAATTTTTGATTGATATTATAGTTTATTACCTGTTTTAACAAATAGGTGTTCACTTGTGCTTTGATATTCACGCTCATTATCGGAATAAATACATTAAATAGTATATTATTCTTCATCAATAAAATTTATTAACTCATTAAATTTAAAATAATTTCACGTTGAAACGGTATAGACTCCTGAATATTTTTAACAAAAATTGTGCTTTTTTTAATAAAGAAATACCTTGTTTTATTGCTAACTATGTTATAACTATAAGAAATTTAAAGATTAATTGGTAGAATAAAAAAATCGCCATATTCTCTATTTTATTTTTAATATTAATTTAATAAAAACAATGTGTTATAAAGTAATTGTTATTTTAAGAATAATTAAAAAAGTTGGTAGAAATTTAAACTAAAATATTTTAATTATAAAACAAAATGTTATAATTGGT # Right flank : GCACGAATGATGTTGAGGCAACTTCTTTGGAATTAATATTTAGAGTATAAATAATGGAATGGCAACACATTTTCAAACAAAAAATGACGGGGGTAAATGTTTTTTAATTCGACGGGAGGCAAGTAGCCTAACGAAGAATGTAATCGTTTCTGATTATACCAATAGGCATAAGTCGAAAAATCGCGTTATAACTCAGCTGTTGAGTTGAAACGTTGGCCTTTTACAAACTCGGTTTTAATTGTTTTAAATGTCGCCTCCGCTACCGCATTGTCATGTTAGGGAATTCGCTATAATTCCCTAACTCAGACTGGTCACTATAGCTATTTTGAACATCTAAGCTGCACATGCCTGAAACCACTACACCCAATCCATTCCACCAATCTAAACAAAAGCCTCAATATTAGGCAAAAAATTGTCAGGAAATATATTGATTTCATTTTATTTTTTGCTTATTAATAATATTTCAATCTATTAAAGCATGTCATAAAACTTAATTGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCTATGCACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3042-3551 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEV01000053.1 Gilliamella sp. Pas-s25 NODE_53_length_3649_cov_347.534792, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3042 28 100.0 32 ............................ TCATTGATATTAGTGTACCCATAAATGTTTCT 3102 28 100.0 33 ............................ TCCCTTTGTATCTCTTTTTAAGCACATCTTCAT 3163 28 100.0 32 ............................ AAATTGCCTCACGATATTCTTCCTTGGTCATT 3223 28 100.0 32 ............................ TCTGCTCACATTTGGAAAGTCCGAAACTTCGC 3283 28 100.0 32 ............................ TGACTATGGGGTAATTCGTGTGATAACCATTG 3343 28 100.0 32 ............................ TCATTCTACACTACTCGCATGGCAAATCAGCT 3403 28 100.0 32 ............................ CATACGGGTAACTATCCCTATGCCAGCCCCCC 3463 28 100.0 33 ............................ TGTAGACGCCACAAAACACTTGGTATTGAAACT 3524 28 92.9 0 ............A........C...... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 32 GTTCACCGCCGAGTAGGCGGTTTAGAAA # Left flank : AACGTTTTATGTGCAAAAATAAATCACATTGCTGCAATTGCAGAGTTATTAATTAGCGACAATGGTCAAAGTAAGTGGGCTGATGAGACTCTAATAAACAGTATAGGTGCAATCTCGACAATGTCGTATGAAATGTCAACTTTATTTGAAAAAGCGGAGGTTGTAGCATGAAACATATTATTGATAGTGATAACTATGAAATAATCGTTAAAAATTTGAGTCAAGCACAGTCTTTAGCATATATTTTAGGTAGTGAAGCGGAAGAAGACAAAGATAAGTCAAATGTATTTTGGATAATTCAAGATTTGGTTAACTACGCCAAAAAACTTGTTCAAGATGCAGAAAAGACGGCTTAGAATTCAAACTCTATAACCCTTTTTTCAGCTTATTTTATAATCCATTGAAAAATATAGATTAATTTAAGCGCTAGAAAAAAGGGTTATTTTTGGAAAAATGGCTAAAATTTAGTTAAAACAATATGATATCTTTGATATAATCTA # Right flank : AAGGCGACATTTCAACGAGTTAACATTGCAAGAACATCGATCATTACTAAATTTAAAAGAAAGCCTCAATTAAGAGGCTTCAGATTGATGACAAAGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGAGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17179-17634 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEV01000010.1 Gilliamella sp. Pas-s25 NODE_10_length_74196_cov_334.592962, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17179 29 100.0 32 ............................. CCTTGTCCTTTTTACGTCTTCAAGCACCGCTT 17240 29 100.0 32 ............................. TTTCATAACGCATGCACTTTTAAATGTCGGAG 17301 29 100.0 32 ............................. CTTCAGCCCAAGTTAACCCCGTTCGCCGTGAT 17362 29 100.0 32 ............................. CTGTTTGCAATCTCTATTATTGCCATGGAAAC 17423 29 100.0 32 ............................. CGGTGAACAGTTTTTTATAAAACAATTGAGCA 17484 29 100.0 32 ............................. AATGTGGTGAAAATCACATTGTTGGGCATTTA 17545 29 100.0 32 ............................. CCGATTGTTGATATTATTATGCAAAATGATTT 17606 29 96.6 0 ..............C.............. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 CTGTTCCCTATGCATATAGGGATAAACCG # Left flank : ATCGCAATTCAAAGTTCGTATCACTCTTTCCGCTTTGCCAGTCGTTTGTGCGCTGGCTGGTTTGGTAACTTTTTGATTGATATTATAGTTTATTACCTGTTTTAACAAATAGGTGTTCACTTGTGCCTTGATATTCACGCTCATTATCGGAATAAATACATTAAATAGTATATTATTCTTCATCAATAAAATTTATTAACTCATTAAATTTAAAATAATTTCACGTTGAAACGGTATAGACTCCTGAATATTTTTAACAAAAATTGTGCTTTTTTTAATAAAGAAATACCTTGTTTTATTGCTAACTATGTTATAACTATAAGAAATTTAAAGATTAATTGGTAGAATAAAAAAAGCGCCATATTCTCTATCTTATTTTTAATATTAATTTAATAAAAACAATGTGTTATAAAGTAATTGTTATTTTAAGAATAATTAAAAAAGTTGGTAGAAATTTAAACTAAAATATTTTAATTATAAAACAAAATGTTATAATTGGT # Right flank : GCACGAATGATGTTGAAGCAACTTATTTGGGATAAATATTTAGAGTATAAAGAATGGAATGGCAACACATTTTCAAACAAAAAATGACGGGGGTAAATGTTTTTTAATTCGACGGGAGGCAAGTAGCCTAACGAAGAATGTAATCGTTTCTGATTATACCAATAGGCATAAGTCGAAAAATCGCGTTATAACTCAGCTGTTGAGTTGAAACGTTGGCCTTTTACAAACTCGGTTTTAATTGTTTTAAATGTCGCCTCCGCTACCGCATTGTCATGTTAGGGAATTCGCTATAATTCCCTAACTCAGACTGGTCACTATAGCTATTTTAAACATCTAAGCTGCACATGCCTGAAACCACTACACCCAATCCATTCCACCAATCTAAACAAAAGCCTCAATATTAGGCAAAAAATTGTCAGGAAATATATTGATTTCATTTTATTTTTTGCTTATTAATAATATTTCAATCTATTAAAGCATGTCATAAAACTTAATTGAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCTATGCATATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29791-30117 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEV01000010.1 Gilliamella sp. Pas-s25 NODE_10_length_74196_cov_334.592962, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29791 28 100.0 32 ............................ GTAGGAAAGTACGGTAAAGTTCGGGTGTCACT 29851 28 100.0 32 ............................ AAAGATTTTTAGGGTCTCTATTTTTCATTATT 29911 28 100.0 32 ............................ AACAGTGATAATTTAGAATTAGCAACTAATGC 29971 28 100.0 32 ............................ TGACCGTAAGCATGGCGAGTTTCTTTATTTAA 30031 28 96.4 32 ............A............... CAACTTTTCTTCGGCTTTCTTTTTATCCTCAT 30091 27 82.1 0 ....................-.A..TCT | ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTCACCGCCGTGTAGGCGGTTTAGAAA # Left flank : CAAATCCAAGGTATCCAATTTCAAGCCACAGCAACGCTTTTACAAAAAGAGCAAGCCGTACATGCTTATAGGTTATATTATCAGGCATTTCCCTTTGCAAGAGTGATAAAAGCACCAATTTGGTCATTGCAGTTGCAACGTATAAAGATGACAAGTAATTTATTAAAGTTTGGCAGTAAAATTCATTGGCTAAAAGGCGAGAATAATTTTTAGTGTACTCTCCTGTTAGTTATGGTGTGTTTTTTGGGGGATATGGGGGCTGTCTTGCCTTAAAAACAACAAGATCAACGTTAAGTTAAATCAATGCGGTATCTGAATATCTTTTAATGGTCAAATTGGCATATTATCGAAATAACCAAAACCTAGCCAACCCTTTTTTTTATCAAAAAAATAAAATCAATAAAAACAATAAATTAAAAATGTCTTATAAAAAAGGGTTTTTGAAAACAAAAATCCTATTTGCCTTTTGCCAAACAAAGTTTATAGTATATCGGCTTCTA # Right flank : TCAAAAAAAGCAGGAATTATGATATAAATTATTAATTTATCTAAAAAAAACAAAATAAAAATTCAATAAAATCAATATAATAACTGAGTGATTCAATTCTATAGAGGGGGAAGACACCGCTTTTATAACACTCAAAGGTTAATATTGCCATTAATCGGTGTCAGAGTGAGGAGACAATTGAGTAAGGTTAGCACGTCAAATAAGGAGCGCTGGGTTATATTTGTCAGAAATAAATTCTAGTTGTGCTGTATAACCGAACTAAGACTCTCGTAAGTTGATTTGTATTGTTTAATATTGCATCGATTATTGAGCGTATAAAGACTATTTTGCCTGTTTATGGTATGATTAGTGCTAGATTCAATGGCAAAAAGTTATGGTGATGATGAGTTATCAAGTTTTAGCACGCAAATGGCGACCAAAATCATTTTCTGAAGTTGTGGGGCAGCAGCATGTCCTCAAAATTCTGTCTAATGCGCTTTCGCTTGGGCGGGTTCATCATG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 46970-46452 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEV01000010.1 Gilliamella sp. Pas-s25 NODE_10_length_74196_cov_334.592962, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46969 29 100.0 32 ............................. TAGTTGAAAGCATCAGAGATCATACAGATTTA 46908 29 100.0 32 ............................. ATGCTATAAATTCAAACATATTTGCTCCTATT 46847 29 100.0 33 ............................. TTGAACATGAAGGATTGACTGTTGAGTCAAGTA 46785 29 100.0 32 ............................. TATCCTGTACATGCGAAAGAGTTGGACGGAAA 46724 29 96.6 32 ............................T GGTTTATAATATAGAATCTTCTAGCAAAACAC 46663 29 100.0 32 ............................. TATCCTTATTCTAATTTGTTCAGCCCATTCTA 46602 29 100.0 32 ............................. AAAAAAATAGCTGAAATGGACGGTAAACATTC 46541 29 100.0 32 ............................. CTTGGGCTGCCATAACTTCTTCTAGTCGAACT 46480 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.6 32 CTGTTCCCTATGCACATAGGGATAAACCG # Left flank : GATGGAACACCGGGGCATGACCCGTTTTCGGAGGCCATCATCAATAAACTTGCTATGTCTGGTCAGTTCAAACAAATATATTTTAATTGCTTATGTAACCGTGCTCTAAGTGAAAGTAAATCTACACGCAGACCACCGTTTATCCACCTATCTAATGTCAATTTAGGCAACTTTACGCTTTATCGATTAAACATTTTAAGTTGTTAAATAAAAAATAATTTTATTCTTAAACGGTATAGACTCCTGAATATTTTTAACAAGAATTTCGTCTTTTTTAATAAAGAAATACCCTGTTTTATTGATGACTATGTTATAACTATAAGAAATTTAATGATTAATTGGTAGAATAAAAAAAGCGCAATATTCTCTATCTTATTTTTAATATTAATTCAATAAAAACAATGCATTATAAAACCATTGATATTTTAATAATAATTGAAAAAGTTGGTAGAAATTTAAACTAAAATATTTTAATTATAAAACAAAATGTTATAATTGGT # Right flank : CCGGATTTTGGGCTTTTTAAAAAACACCCCACTGCTCGCTATCAAAATAGTTTTTTGCCTGTCATTACTGAATATGCTCAAAAACATATAGGTTACATGTTTTTTCATTAGATTAAGTGTGTAGTCTTTACTGAAACATGGGGATTTCATGAAATTTTTGACAAAATGATGCAATTTGCATACTTTCTGATTTATTTATATCTAAATGCTTTTTATCGTGGTAAATACGCTGTTTTTTAGTGGCTCTATTTTATAGAAATTACTCCAACCAACTAGCTTCTCATTTTTGGTATTTATAAAATAAAAAAACAGCCTGTTTTTAGGCTGTTTGTTTAAATTTTTAAACTAGTTTTAGAAACGGTTAGCTATTCCCACTCTATAGTCGCCGGCGGTTTTCCGCTTATATCATATACGACACGAGAAATACCATTGACTTCGTTGATGATTCGATTAGATACGCGCCCTAAGAAGTCATAAGGTAAATGAGCCCAGTGAGCGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCTATGCACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57586-58834 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEV01000005.1 Gilliamella sp. Pas-s25 NODE_5_length_133307_cov_387.798637, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 57586 26 100.0 35 .......................... CCGATTGAGTTCTAATTGTTCTCTATTTTCAGACA 57647 26 100.0 35 .......................... CCGCGTTACTTACAAATAAACAACCCTGCCGTACA 57708 26 100.0 36 .......................... CCGTTCTTCTTGTATATCTTCTATATTATTATTTAC 57770 26 100.0 35 .......................... CCGATTACTATAAACAAAGCAATTTAAGATATGAA 57831 26 100.0 36 .......................... CCGCAGGCGCAAAAAATCAATGAAGATGCGTTAAAC 57893 26 100.0 35 .......................... CCGCGGTTTGGGACCATGATTTAATGCGTCGATAC 57954 26 100.0 36 .......................... CCGGAGTTCAGAAATGGCTAATATACACATGCTTTT 58016 26 100.0 35 .......................... CCGCAATACGTTAAAATCATTAGCATATTTAAAAA 58077 26 100.0 35 .......................... CCGACAATGCCGAATATCAAAAAAGACGAGCATTT 58138 26 100.0 35 .......................... CCGCAACAACAATCAGTTATTAATAATAAATCGCA 58199 26 100.0 35 .......................... CCGGTCGTTAGTAGAGATATTTATGCAGACGATAA 58260 26 100.0 35 .......................... CCGGCAAAGAAAACTGGTATGAATGCTACACATCA 58321 26 100.0 35 .......................... CCGCTGATTGTTATCTGCATTGGAATATCACGCGT 58382 26 100.0 35 .......................... CCCCGTTTTAAATAAAGTTGCAAATCAGGCGACGT 58443 26 100.0 35 .......................... CCGGGCTGCAATTTTTGCAGGATTAGCCATGCTAA 58504 26 100.0 35 .......................... CCGTAAAACATCATCAGGATTAAATTCATTATTTA 58565 26 100.0 35 .......................... CCGTACGCACCCCTCAATCGGTTTAACTCCAGCCC 58626 26 100.0 35 .......................... CCGCAGATGTAATATTTCAGCAAGGTGATATCAAA 58687 26 100.0 35 .......................... CCGAAGATTATGCCAATATTTTCTTAAATGAATTT 58748 26 96.2 35 ..............T........... CCGAATAAATATATTTAAAAATTCATTTAATGATA 58809 26 84.6 0 ......TT..C.......A....... | ========== ====== ====== ====== ========================== ==================================== ================== 21 26 99.1 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CTGATTGAAGATGTCTTATCAGCCGGAGGAATTGAACCGCCATTACCACCTGATGATGTTCAGCCTCCAGCTATCCCTGAACCTAAATCGCTTGCCGATAGTGGCTTTAGGAGTCACTAATTATGAGTATGTGTGTGGTTGTGACCGAAAATGTACCGCCCAGACTAAGGGGGCGTTTAGCTATTTGGTTGCTAGAAGTTAGAGCAGGAGTTTACATTGGTGATATCTCCAGACCAATTAGAGAAATGGTATGGCAACAGATAATGGAATTAGCAGAAGAAGGCAATGTAGTACTTGCTTGGGCAACGAATACCGAATCCGGATTTGACTTCCAAACTTATGGTACAAATAGAAGAGTTCCGGTAGATCTAGATGGACTACGGTTGGTCTCTTTTTTACCTGTTAAAAATCAATAGGTTAAAGTTCTTTAAAAATTTAAAAAATTTGGTGGAATTTATCAGTCGATATAATTATAAATAAAACAAATAGCTATGTTTAGA # Right flank : ACTAACATCTGTATAATTAATTAGGCTATTAAATATATATTTTATTTATCTACCCATCTATCTATCATATTTTTTCCTAGTATATATAAGTCTGTTTCACATAAAAAATAAATCAATCAATGGTTTTATTAGGTGATTTTATTAATTACTTCATTAAACATCTAAGATTTGGTAATGGCTGTATTAATTGTTGATTTAATAAAATCCTTATTATGAAAATAATAGTCTAACGGTATGGTTTTTATTGTGATGTGTGCTTTGGCATTTATTGGAGATTTTTATTTATTGTAAAACAGGAAGGAAATATTAATAATAGCAGGCTAAAACAATGGGCAAAAATAGCGTACAATAGCGCGGTATTTAACACAGGCGTATCATAAATAGGTTAGGAATTTTATAGTATGACAGGCAAATTTATTGTCATCGAAGGGCTGGAAGGGGCGGGTAAAACAACGGCTATTAATACCGTTGCTCGCATTTTGAATCAACATAATATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 62978-62109 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEV01000011.1 Gilliamella sp. Pas-s25 NODE_11_length_73448_cov_339.944931, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 62977 29 96.6 31 ............................C CTCAAGCAAGCTGCCAGACATACGCGCAAAC 62917 29 96.6 31 ............................A GAAACAGATTTAACGGAGGTGAGAAATGACT 62857 29 96.6 31 ............................C ACAATTAAATCAGGTGCTAATGTATATGTTG 62797 29 100.0 31 ............................. AAATCCTTGATTTGTTCCTCAATAGGAATAA 62737 29 100.0 31 ............................. TTGCGCCAGTACTTCAGTCACAAAGATTAAA 62677 29 100.0 31 ............................. TGACAGCGATACACCAGACGGGCAATTACTT 62617 29 96.6 31 ............................G TTCGACCAGATTCCTGTAGTGTTTTCTACAG 62557 29 100.0 31 ............................. TTTCGAAAACGGTGTTCAGGTTTAGTTACTT 62497 29 100.0 31 ............................. CATTGTCTTCTAAACCCAGTACATACGGCTC 62437 29 96.6 31 ............................A AAATTGCACAAAAGGCCAATGTGGCCATATT 62377 29 96.6 31 ............................G ACCAAGTCAAGAGCGTAGCCAGTCGCATCAT 62317 29 100.0 31 ............................. TCATACGCAATAAAAAAGATCGATAAAATGG 62257 29 96.6 31 ............................A TGCAGAATACAACGCCTTTTCTTCGTCTGTT 62197 29 100.0 31 ............................. TTTCTTTACTCATACTAGCCCGCTCTTATAA 62137 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= =============================== ================== 15 29 98.2 31 GTTCACCGCCGCATAGGCGGTTTAGAAAT # Left flank : CTACCAATTTTAAGAAAGCATCCAAAAGATCTGCCGACAGGCCATCGGTTTTATAATTATAAAATTGATAAGCTATATGATGATCATCAAGCCAAGTAAAGGCTTTTTTCATCGTATTGCAGTTTTTTATACCGTAGATGATGTACATAATCAGTGATCCAAATCTAAAAAATAAAGGGAGATTATAACAGTTATCAGCATACGCCAGCAAATCGATGCTATCTATTAGCTAAGATCTTTTTTAGTTGTTTTTGTCATTAATTTTTAACCGTTTATGTTTTTTTAAAAAGTTAAATAAAATCAATTGTCTATCTGAGGTATTCTTGCGTGGCAAATTTACTTAATATCGACATAACCAAAACCCTACCAACCCTTTTTTTTAGCTAAAAATAAAATATAATAAAAACAATAAATTATAAAAGAGCCCAAAAAAAGGGTTTTTGAAAACAAAAATCCTATTTGCCTTTTGTTAAACAGGGGTTATAGTATATCCGCTTCTA # Right flank : TCCTTTATTTATTCTAACATCTATCAACAAAGTAACGCATAATACGATTATCGGTTGTTAGTTCTGGATGAAAGGCGCAAACTAAGATGTTATTTTGCTGCGCCATAATACAGTGCTGATCGACAAATGCCAGTTGCTCAATGCCTTTTCCTGCTTTGGCAATATAAGGTGCGCGAATAAATATAGCAGGGATTTGTTCACCAATTGTTGGTATCTCTAAGATTGTTTCAAAGCTGTTAATTTGCCGTCCAAAACCGTTGCGTTCAACACAAATATCCATTAAGCCTAACAATTCGACCTCGTTATGAGTTGTACTGTTACCGCAAAGCACCAGTCCCGCGCAAGTACCCAAAATGCCTTTTCCTTGTTTGGCAAATTGTTTTATAGGCGCTACAAGTCCATTTTGTTTGATTAAACGGCTAATTGTGGTGGATTCGCCTCCGGGGATGATTAAACCGTTTAGCTTGGTTAAATGTTCGGGTTTTTGCACTAAAGTCGCT # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCATAGGCGGTTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 35650-35082 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEV01000007.1 Gilliamella sp. Pas-s25 NODE_7_length_130917_cov_353.790334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 35649 28 100.0 32 ............................ CATTACTAAGTGAAGACGAAGCTAAGCTTGTT 35589 28 100.0 32 ............................ TCAGGGAACAAGCCCACCTTACATCTGTTACA 35529 28 100.0 32 ............................ ATGGGTTGAGCAAATCACAACAGCAAATATTA 35469 28 100.0 32 ............................ TGCTGCCGCCATTAACTGCGCGCTCAAAAAAT 35409 28 100.0 32 ............................ TCATATGTTTCACGACGCCGGAGCAGATATTC 35349 28 100.0 32 ............................ AGAAGAAAAATTAACTTCAGAACATAAAGATG 35289 28 100.0 32 ............................ GATAAACAAAAATCGGCGCTCCACTTCGTCGG 35229 28 100.0 32 ............................ AAATTAATCATTCAATAATCAACAATCAAGCC 35169 28 100.0 32 ............................ GTCATCATCCCAGTCTTGCAGCAAATTACCTT 35109 28 89.3 0 ...........C.C.T............ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTTTACCGCCGAATAGGCGGTTTAGAAA # Left flank : TATTATCTAATGGTTGTAGCATTAATTGGATTACTTACTGGCATAAAGATGAGAGAAACCGCAAACCAACCATTGCGTGGCGCAACGCCAGCGGCATCAGATCGTTCAGAAGCCAAAGAAATCTTATCGGATCACTTTGACACAATTGAGCACAAAGTCGAAGATATTGAACAGAAGATCGAAACTCTGCAGGCTCAGCGACAGAATTTAGTGGATCAGCATCCTAAGTTAGATTGATTTTTTATTTTTTGGATTTGTATGTTTTACTTTAAAAACATACAAAACTAAAATTTAATAAAATCAATATGCTACCTGAATAATTTTTAACAGTAAAATTAACCCATCATAAAAATAACCAAAACGCTGCCAACCCTTTTTTTTATTAATAAATTAAAGCAAATAAAAACAACATATTAGGGAAGTGCTACAAAAAAGGGTTTTTGAAAATAGAAATCCTATTTGCCTTTTGCTAAACAGGGTTTATAGTATATCGGTTTCTA # Right flank : TCATTGGTTATGCTATTCAGTGATTATTTCGCCCGGATAGGTTTTGTTATAGTGTTTAGTTAGCTTGTTGTCTTAATTTATCTTCAATGGACTTTTTAACTTTAACCAGATGTTTAGATTTATAACTAATTGTTTTATAACGTTTAACTATACTGGTTAGATGCACAAACAGCTTCAATCGGGCTTTCTTTAGTACGTTATAAATAGTTGGACGACTAACCATAAAGCGTTTAGCCAATTCAGTGACAGTTATTCTTTCTTTATGATTTATGTGACAAATCTCTTGTCTTTGATAAAGTGTTAATTTTGTTTTTTATTTATATTCATTACAATGTCTTATCAAATTACTATAAACAACTAAGCAAATAAACTGGCTGATGAATTAGCAGATTGTCCATATTCTAGCGGTAAAAAAGAATCTAAATCTAAAGTCATCAGAAAAATTTCGTTTGAAATTGATGAAAGCTAATATGAAGAATTAGACGATATTGAAATAAAAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGAATAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //