Array 1 340-72 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYR01000222.1 Ideonella sakaiensis strain 201-F6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 339 28 100.0 32 ............................ TACTTCGTGGGCCGCGAGTGGGCCCAGGCCGA 279 28 100.0 32 ............................ ACGACCACCGCCGGGCCTTCGAGTGCCTTGGC 219 28 100.0 32 ............................ ACGTTGAGGGCACGAAGGGCCACCGAGGAGCG 159 28 100.0 32 ............................ TCTTGGCCAGCGATGTAGGCATCGAGCACGAG 99 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTCCACTGCCGCGTAGGCAGCTCAGGAA # Left flank : CAGGAATTGCTGATGTGCAGCGCCCGGGCGAGTTCGTG # Right flank : AAGACCGATCTCGCGGCTGAAGTCACCCTGCGCGTCCACTGCCGCGTAGGCCCCGATGGCCACTTCAAATTC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACTGCCGCGTAGGCAGCTCAGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 31912-34519 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYR01000056.1 Ideonella sakaiensis strain 201-F6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31912 28 100.0 32 ............................ AGGTCGCCGACCACCGCGCCGGGCACCGTAAC 31972 28 100.0 32 ............................ ACAAGGGAGGCAGCAACCCGACCGCTCCGGAG 32032 28 100.0 32 ............................ GCTCCGACGCCGAACTGCGCGCCGCCGCAGCG 32092 28 100.0 32 ............................ GATCCAGACCGAGACGCGGTTCATCTGGCGGG 32152 28 100.0 32 ............................ TGCAGGACCAGGAGCATGAGGGTGTGCTGCAT 32212 28 100.0 32 ............................ TTCGTGCAGGCCGTCGTCGACCAGCTCGGCGC 32272 28 100.0 32 ............................ ACGAGAGCGCGACGACGCTGACCCTGTCGGTC 32332 28 100.0 32 ............................ TTGACGTGCCAGTTGATCAGCGCCTGCAAAGC 32392 28 96.4 32 ......C..................... ATGGTGAACTCGCCGCGCCCGCCCGGGGGCCC 32452 28 100.0 32 ............................ GACCGGATCACGGGCCAAGGCCCGAACGGAGG 32512 28 100.0 32 ............................ TGCAGCCCGTGACGCAGGCCAGCGGCCGGCGC 32572 28 100.0 32 ............................ TCATGCATGACGATTTCCTTCCAGTCGCTGGC 32632 28 100.0 32 ............................ TCGTCGACGGGCCGTCGCTGTACGCCCTGAAC 32692 28 100.0 32 ............................ TCGCGGCTGATGCTGAGCGCAAAGCGCTGATC 32752 28 96.4 32 ...T........................ ACGAAGGCGCAGGTTGGCCTCGGCAACGTCGA 32812 28 100.0 32 ............................ TAGTTGAACTTGCTTTCCGCCCCAGTAGATGC 32872 28 100.0 32 ............................ GCACCGGCTGCTACATCATTTGCGTAGACAGG 32932 28 100.0 32 ............................ TGCTGTTTGGAGTCGCCGAGGGGCTCAGTGCT 32992 28 100.0 32 ............................ TGGTGCCCGTCGACGCGCATCAGCTCGGGCGC 33052 28 100.0 32 ............................ TACGCCGCCTCGCAGGCCGAGTGCGCCGCGAT 33112 28 100.0 32 ............................ TCAGCGGCTGGGAGGTGCTGTTCGCGGTGCTC 33172 28 100.0 32 ............................ AGATCCTTGGGCCAGCCTACGGCCAGCTCGGC 33232 28 100.0 32 ............................ ATCGTCATGGAGACCGACATCGGCACCGGCTC 33292 28 100.0 32 ............................ TCAACCTTCCGGGAGGAACCTCATGGAGAAGG 33352 28 100.0 32 ............................ GTCGAGGAGATGCTGAGCCGCAACCGCATCGC 33412 28 100.0 32 ............................ TATACGAGCGAACGTGTGCACGCCCCTGCGGA 33472 28 100.0 32 ............................ TCGACGATGGGGATCTCGCCGCACTCGACCCA 33532 28 100.0 32 ............................ TGGCCTACAACATCGGCCCCGGCCGCGACGGC 33592 28 100.0 32 ............................ GATGAGGTAGCGAGGGCGTTCCAGGCCAAAGC 33652 28 100.0 32 ............................ ATTCCAGCGCCATCTACCGCGCTAGAGTCATC 33712 28 100.0 32 ............................ TTCTGATGGGCGCAGTGCTGGAGTCAGGCCGC 33772 28 100.0 32 ............................ GCTCACCGCGGCCCTGATGCCGGCCGCGACTG 33832 28 100.0 32 ............................ AGCAGCGCAGGAGGTAGCCGGCGGCTAGGCCG 33892 28 100.0 32 ............................ TGATGGTCCGCCTGATGCGGCAGGCACAGTGC 33952 28 100.0 32 ............................ GTCGTGGCGATGTCCCACTTCACGACCTCGGC 34012 28 100.0 32 ............................ TGTCCACGCTCGGCGACGAGCCCCAAGCCCTT 34072 28 100.0 32 ............................ TTGCTGAAAGGCTCGACGCTGTTCAGTACGCC 34132 28 100.0 32 ............................ ACCTCCGGGAACCCGTCGTGCGTCCGGCCGTC 34192 28 100.0 32 ............................ TCAATCAGGGGGCACCGAACGCGGAGCGGTTA 34252 28 100.0 32 ............................ CGCCCCTACGAGATCCTGCTGCGCTTCCATCC 34312 28 96.4 32 ..G......................... AAACCGAGCGTTCTTCGACTCTGATCGAACGA 34372 28 100.0 32 ............................ ACCGTAGAGGTCCTGAGACGCGCCTGCGCCAT 34432 28 100.0 32 ............................ AGCCTATCGGGCATCTCCGGCCACCTTCGGTC 34492 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 44 28 99.8 32 GTCCACTGCCGCGTAGGCAGCTCAGGAA # Left flank : GGGAGGCGCTGGACTCCCTGGAGGCAACGGGATGGACGAAGTTCGTGCGCGACTACGCGCAGACACGACCGGTGGCCGATGTGCCTGAAGGTTGTATGCACCGCGTCGTCAGCCGCGTCCAGGCCAAGAGCGGCGTTGACCGCTTGCGCCGACGCGCGATGCGACGGCACGACATCGACGCTACTGAAGCCGCCCGCCGGATCCCCGTCGAGGCCGCCGAGCAACTCGCCCTTCCCTTCATGATCCTCGGGAGCCGTTCGACTGGTCAGCCGTCGTTCCCGCTGTTCATTCGGCACGGCCCCTTGCTGTCCGATTCCCGCTCCGGCACGTTCAGTACCTACGGACTGAGCGCCGAGGCCACGATCCCCTGGTTCTGACCCTTTTTCGATTCGCCTCGAGAGATCGAATCAAATCAAGGACTTGGCGGCCGGCCCACCGGAAGGGGGTCGGCCGTCGCTCTTTCAGGAAGGCATGACACTGACCAGGCGCCTGCACGGCCA # Right flank : GGCTCGATGAGGTCGATCTTGTCCCGCAGGGCGTCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACTGCCGCGTAGGCAGCTCAGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 20773-19901 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYR01000116.1 Ideonella sakaiensis strain 201-F6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 20772 27 82.1 32 -G..G.C.G................... GTGTCCATGCCCTCGCCGAGATCGCCCAGGAG GG [20765] 20711 28 100.0 32 ............................ AGGCACGCAGCTGCTCGAGCTGACGGCCGAGC 20651 28 100.0 32 ............................ ATGAGCCACAACGGCCTCACCAAGCTCATCGA 20591 28 100.0 32 ............................ TGCACGCCAGGCAGGGCCGACGCGGCCAGCAG 20531 28 96.4 32 ......G..................... ACCGTGACCCGGTTGTCGGCCGTGGTGTCGTT 20471 28 100.0 32 ............................ GCAAGGAAGAGAAGGACGAGCGCGATCGGCTC 20411 28 100.0 38 ............................ ATCAGCGACTGGCGAAAGAAGGCGCAGGCGGCGTCCAC 20345 28 92.9 32 TG.......................... TGGATGTCCGCTTCGACCGTCATTTCAGCCGC 20285 28 100.0 32 ............................ ACCCGTCGCGTGTCGGCCTGACGAAGCCCAGC 20225 28 96.4 29 .....................A...... TAAGACTGCGCGATGAGCTCGCCCTGCCT 20168 28 100.0 32 ............................ CTGCAGGTAGTCGGTCCACGCCTCGGCCTCGG 20108 28 96.4 32 ............C............... TCTGCGACGACTACCTGGCCGGCTACGTCCAC 20048 28 92.9 32 ............A....T.......... ATCAGGCAGGCATAGAAGGCCTGCAGCAGGTC 19988 28 96.4 32 .A.......................... GCGTTGCCGCACAGGCGGATCTGGCTGCTCTT 19928 28 89.3 0 ..T................A...G.... | ========== ====== ====== ====== ============================ ====================================== ================== 15 28 96.2 32 GTCCACTGCCGCGTAGGCAGCTCAGGAA # Left flank : GGAGTTTGGGT # Right flank : GTTGCGAGGTGCTGCGCGAGGAAGGCTTCAGCGGTAGTCGCCCTCGTGCTGGTGCCTGACAGCCAGAACCACCACGAGTCCGGGAGAAGCAATCTCGTATTTCACGACATAGCCCGACGCTCCGAAGGGGATGACCAGCTCGCGGCGCAGCGGGCTGCGCGCCGCCTCCTCCTTGCGGAACAGGAACGGCGTTCTTGCCAGGGCGTCGAGGGCGGCCTCGATGGCCTGGATCGCGCGCTCGGCGACATCCAGGTCCTCGACGACCTCGGCGCGTTCCAGCAGGAACCCGTACAGACGCAGCAGATCGGCCTGGGCCTCGGGTTCGACCAGAACCTCGAAGCTCATGCCTTCGGCGGCCGATGCCTGCCCTGGAGTTCCCGTCGCCGGGCTTCCAGCCGGTCGCGCATCTCGGCGACGACGTCCGACGCAGGCACGGCATCGCCGGTCCGCTGGAAGCGCGACCAGGCGGCTTCGGCCCGGGCATCGAGTTCGGCCTGCAT # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACTGCCGCGTAGGCAGCTCAGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 336-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYR01000088.1 Ideonella sakaiensis strain 201-F6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 335 28 100.0 32 ............................ GGCTCGATGAGGTCGATCTTGTCCCGCAGGGC 275 28 100.0 32 ............................ ACGATGGCCCGATCGCCGGCCTGGGTCGTGAT 215 28 100.0 32 ............................ ATGTCGTGAGGGCCCATGAACTGCGAAAGGGT 155 28 100.0 33 ............................ TTGCTGATGTGCAGCGCCCGGGCGAGTTCGTGT 94 28 100.0 32 ............................ GGCTCGATGAGGTCGATCTTGTCCCGCAGGGC 34 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 GTCCACTGCCGCGTAGGCAGCTCAGGAA # Left flank : AGCTCAGGAATTGCTGATGTGCAGCGCCCGGGCGAGTTCGTG # Right flank : AACGATG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACTGCCGCGTAGGCAGCTCAGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //