Array 1 10875-6513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQTO010000047.1 Halomonas bachuensis strain DX6 contig47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10874 29 100.0 32 ............................. GGCACGGCGCCTGACAAGTACCTGCGGCCCCA 10813 29 100.0 32 ............................. CGAGCCAGGCCGCCGTCGCTACCACCCTCGCG 10752 29 100.0 32 ............................. CTCGTTCCAGCGCCAGGAATTCACATTGGCTC 10691 29 100.0 33 ............................. GAGATAACCCGATGAGCCAGCGAATCAATATAT 10629 29 100.0 31 ............................. GACGTTACGCATGGTCATTCCCCGTGCAGGT 10569 29 100.0 32 ............................. GCCCGGCATACGTACGCCGGCTGCTGGCGCAG C [10567] 10507 29 100.0 32 ............................. CCGAGGGCCATCGACATGAACCGTAACCTGCA 10446 29 100.0 32 ............................. GTGTCGAGTATCTCGCGGCGCATGGTGAGGGC 10385 29 100.0 32 ............................. CCGACATAATCAGCTATTTCGGACACGCCACG 10324 29 100.0 32 ............................. CGGCTGAGCGCTACGCGGTCGAGTGGGAGCAA 10263 29 100.0 32 ............................. GACCATTGGAGCCCGAACTATGACCCCTGACC 10202 29 100.0 32 ............................. CTAATCGGCAGGTGGAAATTCACCAGCCAGTT 10141 29 100.0 32 ............................. AAATCGAACGGATTCGGCATTTGCGGGACAAA 10080 29 100.0 32 ............................. AAAAGCCCCGGCGGTTGCCAGGGCTCAGGAAT 10019 29 100.0 33 ............................. GAAAACGGTGTTGTCCGGCATGAGTTGACACTA 9957 29 100.0 32 ............................. GGTCTTTTCATTGACCCGGAGCTACACCGAGA 9896 29 96.6 32 ............................C GCATCATTGTGACCTGGGCGGATTGTATGAAC 9835 29 100.0 32 ............................. AACACGGAGACCACGATGCGGACGCAGTCCAA 9774 29 100.0 32 ............................. CGAATATGTGGAACAGTACGCTCAATTATCTG 9713 29 100.0 32 ............................. GCATCCGCAACAACAATCCCGGCAATATCGAG 9652 29 100.0 32 ............................. CTCGCCGGGCCTTCCTCGATTGCGTAACAGAG 9591 29 100.0 32 ............................. CTGATAGGTGGCGTATGAGCAACGGTCGCGGA 9530 29 100.0 32 ............................. TCAACATGTCGTGTCCCTCTTGCTGTGTCGGC 9469 29 100.0 32 ............................. TTGTAACACTCGCCGGAGTAGCGGACGGCCCA 9408 29 100.0 32 ............................. TACTTGTCGAGCACGGCGCCTATGGCGTTGCC 9347 29 100.0 31 ............................. GCTGCCAGGTAGTTGGAATCTGGGTGCCGCT 9287 29 100.0 32 ............................. CATGCCGAGGTTCACGTCATCAACGTTCAGGG C [9285] 9225 29 100.0 32 ............................. GCGAACAACTAAATCCTGCATTTCCTACCGGG 9164 29 100.0 32 ............................. TCGTGGCTGGCAGAGGGCGGCAGCATAGATGA 9103 29 100.0 32 ............................. GTGACGCACCGACCGACCCGGCCGCTGATCCG 9042 29 100.0 32 ............................. TAACGTTCCAATCGCCAGCATAGGGACTATTC 8981 29 89.7 32 ............A.G........A..... GCCCCTTGCGGATCGAAAGTACGAGCAGCTAG 8920 29 89.7 31 ............A.G........A..... CACGGCAAGGGCGTGGAGCTCGAGGCGCAGT 8860 29 89.7 32 ............A.G........A..... TAGCGCTAGAGATAGTAATGTTTTCATTGGTA C [8858] 8798 29 89.7 32 ............A.G........A..... TAGCCGAGCTGCGCGATCTGGCCGAAAACCTT 8737 29 89.7 32 ............A.G........A..... GCCGCCAATGACGAGCAGTGGCGCAGCGAGGC 8676 29 89.7 32 ............A.G........A..... TTTGCTTACGGGGTCTATCAGGATTTCGCCGA 8615 29 89.7 32 ............A.G........A..... TGCTCGGCAAGACGAGCGTATCGTCTACCTGA 8554 29 89.7 32 ............A.G........A..... CCTGGCAGTGACGTTGACATGAGTACCACAGC 8493 29 89.7 32 ............A.G........A..... GCGACATGGCCGGCTTGCTCTTCTGCTTTTCG 8432 29 86.2 32 .T..........A.G........A..... GCTGATCCACTACCTCATGGACTACCGGGTCA 8371 29 89.7 32 ............A.G........A..... CCTGATGTCGCAGTTCTGACGGCTCGTGTGCG 8310 29 89.7 32 ............A.G........A..... CGTTACGGCACCCTCGGTCAACGAGATGAGAA 8249 29 89.7 32 ............A.G........A..... TCGAGCGTGGCATCGTCCAGGCCGGTATCCTC 8188 29 89.7 32 ............A.G........A..... GTCGAGTAACCCGCTGCCCCGTTGGATGAATA 8127 29 89.7 32 ............A.G........A..... CAAAAGCTGCTGCCGGCGGGCTACGGTCACCG 8066 29 89.7 32 ............A.G........A..... CAGATCACCGTCAGCGGATTGATACCCGACCA 8005 29 89.7 32 ............A.G........A..... CGATAAGCGTTGGGTAAGACCGGAGCTGGTCG 7944 29 89.7 32 ............A.G........A..... ATTGAGAATCTTCGCATCGGCGAGACGCCCAT 7883 29 86.2 32 ............A.G........A....T CGTCGTCGTCCATGGCCGGCAGGTCGTCGTGC 7822 29 89.7 32 ............A.G........A..... CAGCTGATACGAGTGAATTGATCGACGCCTCG 7761 29 89.7 32 ............A.G........A..... CTTGGCTCCGCGCGCCGCACAGTACAGGGCCA 7700 29 89.7 32 ............A.G........A..... GATGAGGAGCGCGAGATGCAGCGCCTGCAGGT 7639 29 89.7 32 ............A.G........A..... CACGGGGTCGACTGTACTCTCGACGAGGTATT 7578 29 89.7 32 ............A.G........A..... ACGTCATTGCGCGGCCGCCCGCTTGAGGGCGG 7517 29 89.7 32 ............A.G........A..... GCCCTGGTCACCGAGCACGCCAACCGCATCAA 7456 29 100.0 32 ............................. CTGCCCGTAATGGCTACCTCACGCCTTTCTGA 7395 29 100.0 32 ............................. CTGGACCTGGCCGAAGTGGATGGCACCGTGAA 7334 29 100.0 32 ............................. GTATTCGCCAACGGCAAACAGCTGATCTGCCA 7273 29 100.0 32 ............................. CCCGCTGGGTGTGTGAAGCTGCACAAGCCTTC 7212 29 86.2 31 ............A.G......G.A..... ACGTGATCAATACGCCGATTGGCTCGATTGT 7152 29 89.7 32 ............A.G........A..... CGCTTCGTGCGCGACGAGCTGACGGCTAGGGC C [7150] 7090 29 86.2 32 ............A.G.....A..A..... GGCAAGGCCGCCCAGCCGATCAATGCCCGGGT 7029 29 100.0 32 ............................. GGTCAGTGCTGCGATGATTGCCATCGTCAGGC 6968 29 96.6 32 ....................T........ TTCGGTGTCGTGCTCGAGCGCACCGTTCTTGA 6907 29 100.0 32 ............................. TCGAAAAACGGCTTCGTAAACTGTGTTGGGGT 6846 29 100.0 32 ............................. GCAGTGCACGGGTACTTGAGGAATGCTATACC 6785 29 96.6 32 ............................A GGAGGCGTGATGCTGCTGGACCTCATCGACGC 6724 29 93.1 32 .....................C.C..... TGCAGTTCGGCGCCGTTATCCAGCACCAAGGG 6663 29 89.7 32 .........A.A.T............... GAGTTGTGCGAGCTGCTGGGCGGCCAGGAATT 6602 29 96.6 32 .....................C....... AGCGCTTTGGCTTTCCCGGCCCATCGCCCAGA 6541 29 93.1 0 .......................A....C | ========== ====== ====== ====== ============================= ================================= ================== 72 29 95.3 32 CCGATCCCCGCGGGAGCGGGGATTAACCG # Left flank : AGGGGATATCGAACCACCACCGCCAGCCCCCGAAGCCGTGCCACCGGCCATACCGGAGCCTGCTTCCGTGGGCGATGCCGGGCACAGGAGCGGCTGATGGCCATGCTAGTCGTAGTGACCGAAGCCGTACCGCCCCGTCTACGCGGCAGGCTCGCCGTGTGGCTGCTCGAGGTACGCGCTGGAGTCTATGTCGGCGATGTCAGCAGGCGTATTCGCGAGATGATCTGGGAGCAGATCAATGCGCTGGCGGAGGAAGGCAATGTCGTGATGGCCTGGGCCAGCAATCATGAGTCCGGTTTTGAATTCCAAACATACGGCTCGAATCGTCGTGAGCCTTGGGATCATGACGGACTGCGCTTGGTACGCTTTACCCCCTTGGAGGTTAAGTAGCTGATTATCCTGGCTCTTTAAGAAATTAGTCTGTACAAAAAATAGGCAAAATCGCCGGTGGAAAAACCAACGGCGATTTTCCTTTTTTAGATCAATTGTCTACGATTAGT # Right flank : TAATACCGGCTTATTGTTTCACTAGTGAGGCTTTGTTCCTCGTAGTGGCGGGGAAAACAGGCCGTCTTGGGTGCAGCTCAATGGTAGAGCTGCATCCCGATTCCTGCTCGTCCTACTCCCCAAACTCCTCCGTATCGATCTCCGCCTGCAGCGCTTCGCTGTAACGAACGCCAGCCACCTGATCGGGTGTCAGCAGTTCGCTCAGCCGCTGGAGGGTGGCGGTATCCAGGCACAGTTCTTCGGCCGCCAGGTTTTCGCGCATGTGCGCGATGGAGCGGGTGCCGGGGATGGGGATTACGTCGTCGCCTTGGGCGATGAGCCAGGCGAGGGCGAGCTGGCCGGTGGTTACTTCCTGTTCGCGGGCGATGGCCCGGAGCTTTTCCAGCTGGCGCAGGTTGTGCGGCAGGTTCTCGGCGCTAAAGCGGGGCATGCCGCGGCGTACGTCGTTCTCGGTGAGCTGGCTGGTCTCCGTTACGGCGCCGGCCAGGAAGCCGCGGCCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCGGGAGCGGGGATTAACCG # Alternate repeat : CCGATCCCCGCGAGGGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGGGAGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //