Array 1 880412-880017 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_WHVL01000001.1 Halomonas malpeensis strain prim 29 NODE_1_length_1128416_cov_41.7793, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    880411	    29	  86.2	    32	............GGC.T............	GCGGGCTGCGAGTGGTTGGCCAGCGTTGCCGA	
    880350	    29	  89.7	    32	............GGC..............	TCGGGCTGCTTCCTCCAGGTGATCAGGGGCGA	
    880289	    29	  89.7	    32	............GGC..............	CCCGTGTTGGCCGACCTGGAGTCTATTGGTAC	
    880228	    29	 100.0	    32	.............................	CTCGTTCTCGCGCCTGGAGAATTTGCGCTGGC	
    880167	    29	  96.6	    32	................G............	CCTGAGGGTGAGCGCAGTATGGCAGCCACCGT	
    880106	    29	 100.0	    32	.............................	CCAAAGGGCATTTTGTGGGCATCACTCAGGGT	
    880045	    29	  96.6	     0	............................A	|                               	
==========	======	======	======	=============================	================================	==================
         7	    29	  94.1	    32	CCGTTCCCCGCACCTGCGGGGATGAACCG	                                	       

# Left flank :   GACGTAATGATTGGCTGGGTGCAGCGCTACTTCCCGCCCGGTACCGGCATCAGCTACCCCCAGGGCGGCTTTCTGCTCTGGGTAGAGCTACCCGCCGCCGTGGACTGCGTGCGTCTCAACGACCGCTTGGCCGAGCACCGCCTTCACGTTGCCCCGGGAGCGCTATTCTCCGCCTCGGGCAAGTTCCGCCAGTGTTTGCGGCTGAACTACGCGTTCACACTTACGCCGGATATCGAAGACGCCGTGCGCCGCGTGGGCGCACTGGCGGGTGCAATGGTCGAGGAAGCCCTGCAGCCGCTCGAGTAGCAGCGTTCGACTCAGTAGACATCACCGCGAATACGCAGCTATAACATCACGCTTAGTGGACTTTTATAGGGGCTTAGCAAGTAACTGATTTTAGGGTTCTTTAATAATATGCTGTTGATCAAAAAGTAACCAAACACGGTGGTGGATTTTTTGTTGCCTGTTTTTGTCTTTTAGATCAATTGTCTATAATTAGA
# Right flank :  GAAGCTCCGCTCGCCGAACAAGCTGGAGGAAGCCGTTCCCCGCGCCGGCGGGGCAATTCCATCCCCTCCACCGTTACGCGAACACGCGGTGGCCTGCATGAGGATGAAATAAGAAGCGACAGTGGAAAACATTGCCTGGGGATGGCTACCTGGATGAAATCGGCGTATCAAATAGGGATATTGCCAAGTCGCGATGAGTCATGAACGCTCATCGCAAGAGGAAGGTAGTCATGATGTTGCGTTCATTTGGCTGGATGACGGCTGCTGTCATGGGGCTGTCGATAGGGTTTGCCGTTGAGGCCAGCGTCAGCACTGCCCAAAGCGGTTGGCGCGCAGATGAGTGATACCTGCACCCCCGTCGACGAATCGCTGGGGATCACGCCCCAGCGCTACGCGATGGATGATGACATGGGTGGCGATCTGTGGCTCTTGCCCTGCAACGCAGGTGCCTACCAGACGTCTTTCGAGGCGGTCTACCAGCCGGAAGACGCCGAACCGCG

# Questionable array : NO	 Score: 5.52
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCGTTCCCCGCACCTGCGGGGATGAACCG
# Alternate repeat :   CCGTTCCCCGCAGGCGCGGGGATGAACC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [4,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCACCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [31.7-66.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,5.14   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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