Array 1 1228647-1227699 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029331.1 Thauera hydrothermalis strain GD-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1228646 37 100.0 33 ..................................... CCGCCGCCTCCAGCAATTCAGTCGGCATCCGCA 1228576 37 100.0 34 ..................................... GGGTTTTTCTTTGTGAGCATGCTAACGCATGTCG 1228505 37 100.0 33 ..................................... ACAGGGTTGCCCGCTGCTTTTCGCTTTGCCCGG 1228435 37 100.0 33 ..................................... AACGAGGGGCGGCCAGGCTTGGCCGTGATTGCT 1228365 37 100.0 34 ..................................... TCCCCGATCTGGACGTTTTGACGGACGTATCGCG 1228294 37 100.0 33 ..................................... CGCCAACCAGGGCGCTGGTCGGGATGTCGAGCA 1228224 37 100.0 33 ..................................... GCGCACCCGAACACGGTAGCGCTGTGGGCCGCA 1228154 37 100.0 35 ..................................... TGTCAACGCAGTTATAGGATTTCTGCATTTTCAGA 1228082 37 100.0 33 ..................................... GCCAGGGGCAGGTATGGGTTGTCCTGCTCATCT 1228012 37 100.0 31 ..................................... GAACTTGCACTGCTTCTCGCCGGGGCGCAGG 1227944 37 100.0 34 ..................................... GTGGCCATCCCCATGGCCGACGTACTCACGGTGG 1227873 37 100.0 31 ..................................... GGGGTGCTTGGCAATGCCGAGTTCCCGAAGC 1227805 37 97.3 33 ........A............................ ATAAGCACTCCGGCCATGCTGGCCTCCTTCTAA 1227735 37 97.3 0 ........A............................ | ========== ====== ====== ====== ===================================== =================================== ================== 14 37 99.6 33 GTCCAAGCGGTTGCCCTGATTTCAAAGGGATTAAGAC # Left flank : TGCAGGCGACGGGTCGGCGCTTCTCGCTGAACATGATCTCGGCCGTCGGCACGCAGGGCGAATTTCGGTTCATGCTGCATGAGGGCTCGGTCGGTGCGAAAGTGTTCGTCGAGTTCCTCAAGCGCTTGATGCTCAATGCCGAGAAACCGGTCTTTCTGATCGTCGATGGTCATCCGATTCACAAGGCAAAGATGGTCAAGAGCTACATCGAGAGCTTGGACGGCAAGCTCAAGTTGTTCTATTTGCCGCCTTACTCGCCGCAGCTGAACCCGGACGAAACAGTCTGGGCTCATGTGAAGCGGAAGGTTTCGAGCCAGTTGGTCGAGAGCGCCGAGGAGATGAAGCGACTCGCACTCCGTGCTTTGCGTAGCATCCAGAAGCTCCCCGAACTCGTGAAGTCATTTTTTAGGCAGCCAGAGTGCCGCTATATCCTGGGCTGACACTACTTATTGAAAAGTTAGTAAGACCCGTGGCCAGAGATTGAACCTAGCCCACCTAAC # Right flank : CGCAAGTCCGCGGCGGTCTCGTCAACTCGGACGCAAGGCTCCGCAAAGGGAGCTGTCATCGACCAGAAGGGAGAAAAAATGAAGAAAACGCTTATTGGGCTAGCTTTTTCTGTTGCACTTGGTGGTTGTGCATCGAGCCCGGACAAAATCCAAGCGTCCTACGTGTCGCCAATGCAGTACAAAGATTATGACTGCAACCAAATTGCGAGCGAACTGGAAAGGGTCTCACGTCGCGCCAATGAACTTCATGGAAGTTTGAAAAAAACCGCGGACGCCGATAGCGCCCAGATGGCGGTTGGAATGGTTCTCTTCTGGCCTGCGCTGTTTTTCCTCGAGGGAGGAGACGGACCGGAGGCGGCCGAGTATAGTCGGCTGAAAGGAGAACGCGACGCCTTGGAAAAAGCAGCGATTCAGAAAAAATGCGACGCATCGATTATTCCCCAACCTGCTTCACCCGGCATTGAAGCAGGCGGCAAAGCGGCACAGCAAACTTCGAGCGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAAGCGGTTGCCCTGATTTCAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 1231018-1229781 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029331.1 Thauera hydrothermalis strain GD-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1231017 37 100.0 33 ..................................... ATCTTGGTGTAAGCGATATTTGTTGCCGTTGGA 1230947 37 100.0 32 ..................................... TAGACACTTCTTTCCAGCCATCTTTCGTCCTT 1230878 37 100.0 35 ..................................... ATAATCACGGATACAAAGATAAACAATATCCTCAT 1230806 37 100.0 34 ..................................... AGACGAAATCTCAAACTCTTTCTCTTCAGTGTTA 1230735 37 100.0 33 ..................................... GAACGTGATGACCTTGATGGAGCCACGCGCGAG 1230665 37 100.0 34 ..................................... GCGACGAGTGAAACCGAAGCGCCCCAAGCAGACC 1230594 37 100.0 34 ..................................... AGGCACGTTTTACCTTTCATCCCTGTAATCTCAC 1230523 37 100.0 34 ..................................... ATTCCCCATTCTTCCATATTGTACAATTCTGCGA 1230452 37 100.0 33 ..................................... TGATCATCTAGCGTCATCCGCTCGATGCAATAA 1230382 37 100.0 33 ..................................... GGCGGTATTCATTTCGGTGGAATTCATCATTTT 1230312 37 100.0 33 ..................................... TGATCGGTGTCCGTGACCCTGGCCAGGCCGATG 1230242 37 100.0 33 ..................................... GCGGCTCGGCCAGCGACTCGTGATGCTTGTCGA 1230172 37 100.0 35 ..................................... TCTGTGGAAACCACTTCACATCACAGCGCAGGCGT 1230100 37 100.0 33 ..................................... ACTGAAGTACGTGATCACACTACCGAATTCGGG 1230030 37 100.0 34 ..................................... CGTAGAACTCTTCATCGGTCATCATCGCTGATGT 1229959 37 100.0 34 ..................................... CCACGCGCCCCGCTCAGGTTCGTCGGCCCCCTGC 1229888 37 100.0 33 ..................................... CGTATCGCGCGAGCTAGTCTTAACTTTCCCAAA 1229818 37 94.6 0 .................................C..G | T [1229783] ========== ====== ====== ====== ===================================== =================================== ================== 18 37 99.7 34 GTCCAAGCGGTTGCCCTGATTTCAAAGGGATTAAGAC # Left flank : GTCACCTTGCACGGGAGATCGAAGCATGGCACTGAACACACCGCGCGGCTGGCTGATCGCTTATGACATTACCCACCCCAAACGCCTGGCGCGCCTTCATCGATTTCTGGTCAAACACGCCACACCGGTCCAGTACTCGGTTTTTCACTTTGAAGGCAGCGCCGCGCAAATGGGACGCCTGATGGACGACCTCGACAGCCGTATCGACCCCAGCAGCGACGACGTGCGCGGCTATCAGTTGCCGGAGCGGCTAAGCATCGACACCTTGGGCCGCGGTAGCCTGCCCGGCAACGCGCTGATTCTATCGGCCACCTCGCCCAGCCTGCAGCAGCTTCTGGCCCGAGCGCCAAAGCTCCCCAGCACAAGCTCATAAAGTGATACAATCCCACGCGCTTGGGCGCGAGGAACCCAGCTTGAAACAATCCGCTCTCGAAACCACCCCGATCTTTGTGAACCCCCTCTGCAACACACTGATTGGTAAGGCTTTTTCAAGGCGAGCA # Right flank : TTTCCCATAAGTAGTGTCATGTGAGCGATAATATGGCCTATGAAATGCAAACGACTTTCCGACGGCCGAGCTCTCGATCATCACACCTTGCAGGTCATGCGGCAGCAGGCCGTCAAAGCGGTACGTGACGGGCAGACGGTGCAAAGCGTCGCGGCGGCGTATGGCGTGAATGAGCGCAGCGTTTTCCGGTGGCTCGCCGATTTTGCCAATGGCGGACAGAACGCATTGCTCGCCAAGCCGATTCCGGGACGCCCGAGCAAACTCAGCGCCGAGGAGCTTTCGTGGATTGCCAATGCGGTTCGTGACCACAACCCGCAGCAGTTCAAGTTCGAGTTCGGCTTGTGGACGCTGTCTCTGATTCGTCACTTGATCAAACGCCAATTCAAGAAAGAGCTGTCGGTCTCCTCGGTTCACCGCCTGATGAAGATCCTGGGTTTCAGCGCCCAGAAGCCGCTCTACCAGGCGTGGCAGCAAGACCCCGTCCTGGTGCGCACTTGGGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAAGCGGTTGCCCTGATTTCAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 2992577-2994196 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029331.1 Thauera hydrothermalis strain GD-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2992577 29 100.0 33 ............................. TGCGACACGTTAAGTGCGACAACTGCGACGAAG 2992639 29 100.0 32 ............................. CTCGTCAGAGCTTGCGGCTCCGGGCCGGCGTC 2992700 29 100.0 32 ............................. TATCGATTCGGCGCATGTGCCAAAAAAATTTG 2992761 29 100.0 32 ............................. GAAATCCGCAGGGAGAACGGTATCGAATGATA 2992822 29 100.0 32 ............................. GCATTCCATTACAGTCACGGATACAAAGATAA 2992883 29 100.0 32 ............................. GTTTATCTGTGCAATGCTCTGAATTGGGCAGA 2992944 29 100.0 32 ............................. GCCACGACTGAGACAATCGCCGGCATCATCGG 2993005 29 100.0 32 ............................. AACAAAACTTGCTTAAATCATTCGTAGAATCT 2993066 29 100.0 33 ............................. TCGTTACTGTTCGTTGCTATATGGGCCGATCCA 2993128 29 100.0 32 ............................. TCGAGGCAGGAATGCCGGAGGTCTGGCAGACC 2993189 29 100.0 32 ............................. GCAGAACGCGATGCGGCGGCGTGACCTCGTGC 2993250 29 100.0 32 ............................. ATAACGCGCCATGAGGCGGGCGGCAGCCGACC 2993311 29 100.0 32 ............................. CACGCGCCAGCGCTGATCGAGGCAGGGGTCAT 2993372 29 100.0 33 ............................. GATACGGTGATTGACGTGGTGGCCACCGCGTGG 2993434 29 100.0 32 ............................. CACGCGCCAGCGCTGATCGAGGCAGGGGTCAT 2993495 29 100.0 33 ............................. CGGTTTGTGGAACGGCTGCAAAGCGCCTGTGAC 2993557 29 100.0 32 ............................. TCGAACTCGTCCTCGATGTCGATGCCCGCGAC 2993618 29 100.0 32 ............................. CCCGGTGCGCCACGCGCCGTCTTGCCATGTCT 2993679 29 100.0 32 ............................. CGTGCGTGCAGCCGGTATCCGCGCACGGGCGA 2993740 29 100.0 32 ............................. GCGGCGTTGGCGAGCTGGTCGTAGGCGACGGC 2993801 29 100.0 33 ............................. GGACGCCTGGCTCCAGGGTAATGGCCGCCGAGA 2993863 29 100.0 32 ............................. CTTGTTGCCTTCCCGACGCTGATAGGGGCGCT 2993924 29 96.6 32 ............................T TGACTCTTGCCCTGGGGGCGCCGAGCCTGGGT 2993985 29 100.0 32 ............................. TAGGCTCGTCGCATCTTCGGAATGATCTGGCG 2994046 29 100.0 32 ............................. GCGGCAGCCGACGCCGAGGTCGCTGACAAGCT 2994107 29 100.0 32 ............................. CGGCCAAGGTAGCCATCCCCGACGATCTGACA 2994168 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.9 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CTGGAACGCATCATCCCGGACATCGAGGAAATCCTCGCCGCGGGCGAGATCCCCCGCCCCGAGGCACCGCAAGAGTCGGTCGGCCCCGCTATCCCCAACCCGGAGAACTTGGGCGATGCTGGTCATCGTGCTTGAGAACGCCCCACCCCGGCTGCGTGGCCGGCTGGCGGTGTGGCTGCTGGAAGTACGCGCCGGGGTGTATGTGGGCACCTACTCGCGGCGGGTGCGCGAACACATCTGGAACCAGGTGGAGGCGGGTATCGAGAATGGCAACGCGGTAATGATGTGGTACGCGAACAACGAAGCCGGCTTCGAGTTCCAGACCCTCGGCCCCAACCGCCGCCTGCCCGCAGATTGGGACGGCGTACGTCTCGTCAGTTTCCACCCGAACGCCGACGAGAGCGATGTTTAATCTTGATAATATGTTTATGGCATGACAATGAGTCGGTTAAAATTCTGCCTAGAAAATATCAATTGAAATTCAATTGGATAAGAAAAGT # Right flank : GTCTCATTTTGATCCGCTGATTAACAGGCCGTTGAAAAAGTGGTCACAAAAGCCTCGTACCCTCTGCCAAGAGTCGATTTCGACCGAGCAGGGGCGGTTTTTCGGCCTGCGACAGCCCCTGTTGGGGCCTGCTGCAGGCCCTTTGGCCCACTTCGGGCGCACTGAGCCCGTGTTTCACGCATGATGCGCATCCCACCAGCCACCGATGCAGCCCATGCGTATCAGGTTGTAGGCGGCAAAGCACAGCAGCGCCTGCCCCGCCAACTTGGCGTGCCCGATCAGTTTGGTCTTGGCCAGTCCCCCCACGGTCTTGATCCAGCCAAAGGCCTCTTCGATGCGTTTGCGCACACGCAGGCTCTTGTGGTACCCCGCGTGTCGTGTGGTGCGCGCATCGATGGCCGAGTACTTGCTGCGGGCGGCCACGTGCGGGGTGATGCCAAGCTTGCGGCAGCCCTGCACAAAGGCATGGCAGTCGTAGCCCTTGTCGGCGCCCACGGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2995545-2996433 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029331.1 Thauera hydrothermalis strain GD-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2995545 29 100.0 33 ............................. CTGGGACGTGCTGATCCCGACCATCCGCAAGGA 2995607 29 100.0 33 ............................. ACCCCGCCTTGCGCGACCCGGCTGTGGGCACGC 2995669 29 100.0 33 ............................. GCGGATTGGCTTGTGACCGGGGCCAACGCGAGC 2995731 29 96.6 32 ...............A............. CCCAGGCCCGCATTGCAGCGGTAGCGGATGCC 2995792 29 100.0 33 ............................. GCCGCGCGCGCGTTGCCGTCACCTATGACTGGC 2995854 29 100.0 32 ............................. ACTTCTGGACCGAGTTTCAGACCAATCAGCTC 2995915 29 100.0 32 ............................. GCGTGGGCGCAGTTCGACAACTTCCGGCGGGC 2995976 29 100.0 32 ............................. CCTTCAGCAAAGACCCTCAAGAGCAGCAGCTC 2996037 29 100.0 32 ............................. TCGATCGGACGCGCCGGGCGCTCTAGCCCCAA 2996098 29 100.0 33 ............................. CGGGCCGCGCCTGGCGCACGCGCATCATCTACC 2996160 29 100.0 32 ............................. CGCTCGGCCTCCACCGTGGTGGATATTCGGGA 2996221 29 100.0 32 ............................. AGGCTGCGGCAAAATCTCCCTCCACGCGTGAT 2996282 29 100.0 32 ............................. GCATCGAGTAGGTGCGTCATCACCTCCGGCAG 2996343 29 100.0 33 ............................. TCATGCGCCGTCGCACGCAATGCGGGCACGGCC 2996405 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.8 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : GATGAGCCTGGCCCACTCAGCCATGTGTCTGACACGATCGAAGAAGGCGCGTGCCAAGCCTTCGTTGAAGAGACGCTCACGGTTGGCGCTGAAGGTAGAGTGATCCCAGACCTTGTCGTCGATGTTCAGCCCCACGAACCAGCGGTACAGCAGGTTGTAGTCGATGGCCTCAACAAGCAGCCGCTCGCTGCGGATGGAAAAGAGAATTTGCAGCAGCAAGGCCTGGAGCATCTCCGGCGGCACCGACGGGCGACCCGTGCGGGCGTATACCGCCTCGAACTCTTGGTGCATCGTCGCCAGCAGCGCATCGACCACGGCGCGCAGCTTGCGCAGTGGGTGCCTGGCCGGCACACGCTCTTCAAGACTGATGTAGCTGAACATCGCCCCTTGAAAGTTCGGCTTGCCTCTCATCGTCGCTGTCTCGCCTTGGGTCGTCCTCGCAGCTCATATGGTAGCCGCACATGCACGGGAGTTTTTCAACGGCCTGTTAAGGCGATGAG # Right flank : GCCATACTGGCGGCGCAGGTTTGGTGACGCTCAATGCCGCGGCGGCGATGTGCGCCAAGGGGCCGATTGCACCGACCTGGATGTTGGACTCATAGCAACGGCGCCAACCATTTGCGCGCAGCCTCCAAGCTCAGGCCGGTGCGCTTGGCCCAGTCCTGCAATTGGTCTTCGCCGATTTTGCCGATGGCAAAGTAATGGCTTTGCGGATGGGCAAAGTAAAAGCCGGCAACACTTGCCGCGGGGGTCATGGCCATGGCTTCGGTGAGCCCCATGCCGGCGTGGGTCGGGGCGTCGAGCAACTGAAAGAGCGCGGCTTTGACCGTGTGGTCCGGGCAGGCGGGGTAGCCGGGGGCAGGGCGAATGCCGCGGTATTGCTCTTTGATCAGCGCGGCATTGTCGAGCTGCTCGTCGGCAGCATACCCCCAGTATTCCTTGCGCACACGCTCGTGCAGCCACTCGGCGCAGGCTTCGGCCAAGCGGTCGGCCAGGCTTTTGAGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //