Array 1 62983-62649 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIEK01000031.1 Escherichia coli strain 31.2p 7000000213723899, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62982 29 100.0 32 ............................. GGCGTCATCATCAAACAGGGCGTCTAACAGCG 62921 29 100.0 32 ............................. ACTATATATTTCCTCAACGAGTAATTTTGAAT 62860 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 62799 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 62738 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 62677 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90176-88683 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIEK01000031.1 Escherichia coli strain 31.2p 7000000213723899, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90175 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 90114 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 90053 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 89992 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 89931 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 89870 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 89809 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 89748 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 89687 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 89626 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 89565 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 89504 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 89443 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 89382 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 89321 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 89260 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 89199 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 89138 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 89077 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 89016 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 88955 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 88894 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 88833 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 88772 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 88711 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //