Array 1 2701-3796 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LFDO01000006.1 Haemophilus influenzae strain HI1374 contig_6, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	=====================================	===================================	==================
      2701	    37	 100.0	    34	.....................................	GGCTCAACTGAATCCAATACAGTAACGGATGCAG 	
      2772	    37	 100.0	    34	.....................................	AATGAACTAGATACTGCATCACCGAATTTAACGT 	
      2843	    37	 100.0	    34	.....................................	CTGATGATCGTATCTTTTTTAAGATTTACAGAAA 	
      2914	    37	 100.0	    35	.....................................	CTTTCAGCGTATCAATTTCCGCAAAGCGTGATTTT	
      2986	    37	 100.0	    34	.....................................	TTTAACTGTCACCCATTATATCCTATTTTTATTT 	
      3057	    37	 100.0	    34	.....................................	GCTATTGAAAATTGCTCTTGATTTTCCAAGCGTT 	
      3128	    37	 100.0	    35	.....................................	CTGCTACTGCTTCTGTTTTATAGTGTTCAATTAAT	
      3200	    37	 100.0	    33	.....................................	TAGGTAAAGTAGCCAAACCACGCAGCTGTGACC  	
      3270	    37	 100.0	    33	.....................................	CGGTAACTATTCAAAATTACGCACTCCGTACCT  	
      3340	    37	 100.0	    34	.....................................	ACTTTAAGCCGTTATATTTTGCAAGTTCGCATTT 	
      3411	    37	 100.0	    34	.....................................	GAGAATGCCGATGAAATTGCTTCACCGAATTTAA 	
      3482	    37	  97.3	    33	.............................G.......	TTAGCCCACATAAAGAATATACCCAGTAAGATA  	
      3552	    37	 100.0	    33	.....................................	GTTTCTATCTCTCGCTCTTCGCTATCGTGTAAA  	
      3622	    37	 100.0	    31	.....................................	GTTAATGAAAGCGTTTTGTCTGCTCTGGCAA    	
      3690	    37	 100.0	    33	.....................................	TCAACACTCTCAGATAACGCTTGCATATTTTGC  	
      3760	    37	 100.0	     0	.....................................	|                                  	
==========	======	======	======	=====================================	===================================	==================
        16	    37	  99.8	    34	GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC	                                   	       

# Left flank :   TAAATTCTAGGAAGAAAAAAATGGCACAATATTTAATTGGTTACGATATTTCCGATCCTAAACGACTACAACGGATTTATCGTCGAATGACAAATTATGCGATCCCCATTCAATATAGTGTATTTATTTTGGATGGCACAGAAAAACTACTTAAGCAATGTTTAGCAGAGATTATGTTAATTTTCCACAAAAAGGAAGATGATTTGCGCGTCTATCCCTTACCAGCCAATGCGGCTCAATGGCGACTAGGTAAATCAAGTTTACCTGATGGGATTTACTGGACGGCCTTGCCTACAGCCTTAACCTTATAAAATGCTACTGGAGTATTTCACAAACTTTGCTAAAATATACCGCACTTTTGGCTGAGTTTTGAAAAAAATAAGAATGATAAAAATTGTTCAATATTTAATCAAATCAATACCCAACTATTCAAACATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCCACTGCA
# Right flank :  CGAATGGGAAGTATTATAATTTTTACTAACTAAACGAGGAAAACAAAATGAGAAAAATCGAACAAAAAATGCTAGATTGTATCCAATTTGGGCATAATTTCAAACTAGGGAATACCAAGGTTTTATGGCACAACGGAGAGCTAAGGGTCTATTTGCATGATTATTGCATAATTCATAAAGTAAAAAATAAAATCACGCTAAAAAAGGGGCAAATTCTAGGAAATGGTGAACCTTTCATCTTAAAAACTCTTTTTAAATTTGATCACAGGGTTTAAAAATGGGGGTTAGTTTTAATGATAATTTTTAAACTTTGGATCGTTGGTTTCTTTTCGTTTCATCTTTTGCTTTATTTATGGGCAAGAAATGAAAGAAAAAAGCCCGATCCTATATTTGACAAAATAAAAGTGGTTTACCCGATCATTAAGATCAAAAATAATTTATTCTATTTTAACGGGTTATATATTACGCCCGATCTAATAATCTACAAAACGCAAAAAATA

# Questionable array : NO	 Score: 3.25
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:51.35%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-5.50,-3.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0.27   Confidence: MEDIUM] 

# Array family : NA
//