Array 1 136-652 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHFJ01000031.1 Marichromatium sp. AB32 NODE_31_length_42184_cov_5.599900, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 136 29 100.0 32 ............................. GCCTCCGAGTCGGGTAACGCTGAGCCAATCAG 197 29 100.0 32 ............................. ACCATCTTGAATGGCGTGACCGGCTGGAACCC 258 29 100.0 32 ............................. CTTCGGTATTACCAGCTTATTAGTAATCTGAG 319 29 100.0 32 ............................. AGCGCGAACATTTCGGAGCCGTCGGCCAACAT 380 29 100.0 32 ............................. CGGCAACAGCGCGACCAGTCCGGGCGCGGTGG 441 29 100.0 32 ............................. ACCTGACCGTGCCGGAAGGCACAAACCCGCTG 502 29 100.0 32 ............................. GTCGAGCGCTTCACCGGCCTTCGCGTCGGCAG 563 29 96.6 32 .........................G... GCCAGCCAGCCGGACCTGGAAACAAGCGTTCA 624 29 79.3 0 .C.........A..C.........CC..C | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.3 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : GCCCAAGATGGTCGCCCTCGGCGCCGCCATGCGGAAACTCGCCCACATCTGCTTCGGTGTGTTCAAGAACCGTCGTCCCTACCAGCCCGATTACGCTTCCGCGGCTTGACGGGAAAGACGGTATCTTAGTGGGTCG # Right flank : CAGCTCACCGCACCACCCGCCAGCGCCGCCACCACCGGTCGCCCCACTCGAACAGGGCGAGGCCGGCGAGGATGGTGAGGCTGCCGAGCCAGATCCTCGGGGTCAGCAGCTCGTCGTTGACGAGGTGGCCGAGGAGCAGGGCGAGCACCGGGGTGATGAGCGGGATCAGCGCCACCCGGCTCGCCTGCATGTGGTGGAGCACGAAGTAGTAGAGGATGAAGCCCAGGGTCGAGCCGAACACCGCCAGGTAGAGGATCGACCAGAGCGCGCGCGGCGGCAGCGTCTCCGGCGGCGCAAAGCCCTCGCTCAGCCCCCAGCTCAGCAGGAACAGCGGCACCGCGATCAGCAGTGCGCCGGTGGTGGTCTCGACCGGGTGCAGGCGCGCGCCGATGCGCTTGATCCAGACCGCGCTGGCCGAGTGGATCACCACCGTCACCAGCACCCCGGCCATGCCCAGCAGCGCCGGACCGCCGAGCGCCAGCCCCTGGGCGAAGATCAGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24002-25131 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHFJ01000045.1 Marichromatium sp. AB32 NODE_45_length_25274_cov_5.969221, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24002 29 100.0 33 ............................. GGTTCGAGACTCCGTTGAGTTCGGCGATCCGGC 24064 29 100.0 32 ............................. ATCCCGCGCTTTTATGTCCGTCACGACACCAT 24125 29 100.0 32 ............................. GCGCATACACGGGATAGAACCCACGCCTAGCG 24186 29 100.0 32 ............................. ATAGCTCGCAAGGGCGCGCTCCTCGGCGTCAC 24247 29 100.0 32 ............................. ACGACCTGGTCGAGATCTCCCTCGGCTGGGAG 24308 29 100.0 32 ............................. CCCGTCTATCCGAGGCGCGAACACGCGAAATC 24369 29 100.0 32 ............................. TCACCCTAATCCTTTCTTAATCCTTTTTTAAT 24430 29 100.0 32 ............................. ATGCCCGTGGCCGCGTAACCGATATCCCGCGC 24491 29 100.0 32 ............................. CGAGGAAAGAGAAAGTGAACACTGAAAACCTG 24552 29 100.0 32 ............................. ATCCTGACGACCAAACGGAAAAACAGCGAATA 24613 29 100.0 32 ............................. ACCGTCTCGCGTGACGACATCCTGGCCGCACT 24674 29 100.0 33 ............................. TCACCCCGGTCAGTTCCTCACCGCCTACCTGGC 24736 29 100.0 33 ............................. GGGTAAGCCGCGCCGGTGTCGCCCATCTCGCGC 24798 29 100.0 32 ............................. CGAAAACTTCGTGCTTGCGCAGCATGACCAGA 24859 29 96.6 32 ............................A CTGGTGTTATGTGCACGACTTCAGCCATCCAC 24920 29 100.0 32 ............................. TCAACTGTGCTTTGGCTTCGCTTTGATGGCCG 24981 29 100.0 32 ............................. TATCGTCGTTGGATGCGGCAGGGAATAGCGCC 25042 29 100.0 32 ............................. TCGACCCGCGAGAGACATGGCCGGTCGACCAC 25103 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : AAGCTGATCCCGATGATCGAGGACGTCCTGGCCGCCGGCGAACTCGCGCCACCACCACCGGCGCCGGAAAACATCCCTCCCGCCATCCCCACCCCGGAAGGACTCGGCGATGCTGGTCATCGTCACTGAGAACGTCCCACCCCGGCTGCGCGGACGGCTGGCGGTGTGGCTACTGGAGATCCGCGCCGGCGTCTATATCGGCACCCCCTCCAAGCGACTGCGCGAGTTCATCTGGGAGCAGCTCCTCGCCGGCGTCGAAGACGGCAACGCGGTCATGGCCTGGAGCACCAACACCGAGTCCGGCTACGACTTCCGCACCATCGGCGAGAACCGGCGCATCCCCGTCGATTTCGACGGACTCAGACTCGTCAGCTTCCTCCCCCCACCCCCATCGGACCCTCCACGATGATCGAAAAACCAACCCCTTCGATAGACCCCGAAAATCTGGTAGATTCAGAGGCGCGTATTTTTCTTCGCTGAATCATGCAAATACGCGAAGA # Right flank : TTTCGCCGAAGCAATGGGCGCCTTGTATCTTGCCACCCCGTGGTGGTTAGCTCCCACCGCGCGAGATTGAGGCAGCTCGATTGCGCCTGAAGGCCTGGACCTTGTCGCTAAGACCAAGCCCTCGATCTCTCTTCTCATGCCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 90199-89018 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHFJ01000004.1 Marichromatium sp. AB32 NODE_4_length_124846_cov_6.044308, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 90198 37 100.0 35 ..................................... CGAGCATTTCTGTGCTGACAGCGGAACGAAGCATT 90126 37 97.3 36 ..............T...................... CAGCAACAGATCGCTCGGCAGCGGGCCTTTCAGGGA 90053 37 100.0 35 ..................................... CCCGTTGGTGGCTGGTGGCGGGCGCATGGCCCGCC 89981 37 100.0 34 ..................................... CAGTCTGCGGACGACGTCGCGGTTGTTGTCCGCG 89910 37 100.0 35 ..................................... CGAGCATGGCGCAGCGCGGGCACAGGCTGTCGCGC 89838 37 100.0 34 ..................................... GTGTCGCGTTTACGTCCACTATATTGCTTCATTT 89767 37 100.0 34 ..................................... GCGCACCGCCTTCGGCAGTGCGGCGTCTGCCCGG 89696 37 100.0 35 ..................................... GGCGGAAAGAGAAAGTCCAGTCGTTGTAGTGACTG 89624 37 100.0 34 ..................................... GTCATAGTCTCCAGTTGGCAGGTTTGGCGGGAAC 89553 37 100.0 35 ..................................... GGTGCCGCCAGGCTAGCCCGGCGGCGGGTTGGGTT 89481 37 100.0 35 ..................................... ACCCCTTGCCCGCGCGGGCCGCTGGCGGCTCGGCG 89409 37 100.0 33 ..................................... TGCGACGGCCTCTTCCAGCGCCGAGGCGGTCTC 89339 37 100.0 33 ..................................... CGCGTTGCCTGTTCGGCTTCCGCTGCCTGATTG 89269 37 100.0 35 ..................................... TTTCCTCTTTTCTCCCAGCAGGTTAGTGGGGATCG 89197 37 100.0 34 ..................................... GGCGTCCATCTCACCTTTCGCGAGGTGGTCGATG 89126 37 97.3 35 .......T............................. ACGATGCCGCCTGCGCCGTCCTGGCGGACGTCGGC 89054 37 94.6 0 .............................G...G... | ========== ====== ====== ====== ===================================== ==================================== ================== 17 37 99.4 35 GTCCGAACCAGAGACCCGATCTAAAGGGGATTAAGAC # Left flank : CAATCTCTCCTGCGACGACTTCGGCACCGGTTACTCGTCGCTGGTGCAGCTCTATCGCATGCCCTTCTGCGAACTCAAGATCGATCGCTCCTTCGTGGTCGACTGCATCGACCAGCCAGAGGCGCGGGTGATCATCCGTGCCAGCATCGAACTCGGCCACAACCTCGGCCTGACCGTCTGCGCCGAGGGCGTGGAGACGCAGGATGTGTTCGATTATCTCCATGCCCAGGGCTGCGACTCCATCCAGGGCTATCACGTCGGCTACCCGGTGCCGGCGATCGACCTGCCCGAGCTGGTCCGCGAGGCCTCGCGCCGACTGCTCGAGATCGAGTCTTGAGTGGGACGGTGGACAGCGGGCATCGGGTCGCTTACCTTGAGTCCCTCGGACCCTTGGCGCAGCCCTCGGAGAGTCACGCGTGCACGTCAACTTTTCGGTTGCCGGAATTTTTGCGAACCACCCTCGCAGGTGCTTGTTTGGAAAGCCTTTCTGGCAACTGGCA # Right flank : ACGACCTGCTCGCGCAGTGCGCGTTGCTCGGTGGTCCAAACCAGAGGTCAGAGATGGCAGGTCTATCCGTGAACACCCCCTGCTTGTGCGCCGCCCCTGGGCGGTTTTTTTCTGTCTGGACGTGATCGAAAGGGGCCGGGAGACGGGGCCGTCTGACTGTCGGCGAGGGTGGGATGGTCAGTCGTTGGCGAGGGAAGGGGTGCGCTGACTCAGCTCCTCGACCAGCCGGTCCAGCGCCATCGCGCGTGACCCCTTGACGAGGATGCAGGTCGCTGGATCGGTGTCGGCGAGGATCCGTGCCGCCAGTGTCGGCGGTTGACTGGAATGATGCTCGACCTGGGCTGATGGTGTGGGTGCGGCGGTGGCGGCGAAGCCGGGGCCGATGAGGATGCAGCGCTCGGCGCTGGCGGCGGCGAGGGCGGCGGGCATCGGGCCGAGCCAGTGTCCCGCGACCACCCCGGCGAGATCCGCCGGGGTCCAGTGCCCCGCCCCGTGCGTGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAACCAGAGACCCGATCTAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 11871-12489 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHFJ01000055.1 Marichromatium sp. AB32 NODE_55_length_19767_cov_5.675713, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 11871 37 100.0 40 ..................................... CGGACCTGGCCGAGGACTGGCGACCGGCGCAGCGGGCGCC 11948 37 100.0 35 ..................................... CGCAAAAAGGGGAGGGATTCAGGCTTGAGGGGGGA 12020 37 100.0 35 ..................................... TTCGTTGTCTGCTCCCAGAAAAACCCATCACCCGA 12092 37 97.3 35 C.................................... CCGTCTCGATCGGTCGGTCTCGTGCTCATGCTCAT 12164 37 100.0 34 ..................................... GTACGGGTTCCCTCTCGGGTTAGCTCAGGGGTGC 12235 37 100.0 37 ..................................... GGCGGGAGCAGGGTGCTCATGTCGCCACCGTCAGCGC 12309 37 100.0 35 ..................................... CAGTCGGGGTTCTCGGCGTCCTCGTGCGCGCGCGC 12381 37 100.0 36 ..................................... GCAGGGATCGCTGCCGGGTAGAGATGGGCGAGCACG 12454 36 94.6 0 ..............C...-.................. | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 99.1 36 GCCGCAATGCTCAATCCATTACAACAAGGATTGAAAC # Left flank : ACCGCCAGGGTGCCCCAGGGGAAGTCACGCCCCAGCACCCGGTAGACGCCGGTCGAGATCCAGAAGCGCGACAACGCCCCGAGCGCGCCGCCCCCGGCGATCGCCACAAGTTGCAACACGGTATCTTCCCGCCAAAAGGGATAAGTCTACTATGGACGTCCGGGCCTTTGCCCGGGCGAACGCCCCGCCCACCCTGGCCACTGCCGCACATCCGAAGCGCACACACAGAGGACACCGATCGCACCGACTTGATATTATCGGGCCACGGCAATACCACTGCCCGCAGCGACCTCGACTCAGACTGCTGAGCAAAAAATATCACCGACCCCCAACGCCACTGACGCAACCTTCTGATAAAAAAGACATAAAATCAAAAGTGTCAATGTCAGACAGCGAGAAAACAGGGCATACATCGGTGCAAGGCATCTATTTTTCGCCACTCAAGAGCCTCGGCAGAAAAGACCAAGCGCTTGATTCAAAATGCTTTTTAGGGAATTTGC # Right flank : CCTTGGATGCGCTAAACGCTGTTTTGTTGCGATGAGAGGGTGAGGAACGGGCAACTCAACCTGCGAGATGACATAGCGATTTAGGTTGGGTTGCTGTTTTTCAGCAACCCAACATCGGTCGATGGCGTCAACAGCGATCAGATCGATCTCAATGCATCGAGTCAGCAGTGTTCGAGCAATACGCTGAAATCCCCCGCCAGATAACCCTCACGCACCCTCATGGTCGCATTCAAGGTATCAGCGAGCTGTTGGATCTCGGTGGGTCGGCGGCAATTGTAGATGAGCGAGGTGTCGCGGCCCTTGAGCAGGTTGAACACGAAACCGCGACGGCTGGCGGCGAGACAGTTGCGGATGAAGCTCTGGGTCTCATCCCAGGTGAGGATGTTCATGGCGCCGCTGCAGACGTAGTAATCGGCCTCGGGCAGCGGATCCTGGAGCACGTCGCACTGGCGGATCTCGCAGCCGGTGCGCGCGCGCGCCGTCTCGATCATCGGCGCCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGCTCAATCCATTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 15056-19952 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHFJ01000034.1 Marichromatium sp. AB32 NODE_34_length_40345_cov_6.421229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 15056 28 100.0 36 ............................ GTGCGGGGAGTACGATGCTCAACATGAGCATCCGTG 15120 28 100.0 36 ............................ GCCTTCTTGCTGTTGAGCGCCCCGCACTTGGGGCAC 15184 28 100.0 36 ............................ AGCGCCATGGCGCTGTGTGGCGACAACTTTTTCGAC 15248 28 100.0 36 ............................ CCACGAAAAGGGAGGGGTGACAGCGGCGCGGCGGCG 15312 28 100.0 36 ............................ TACGTTGAGGACGTGACCGAGGGCGTCAACGCCTAC 15376 28 100.0 36 ............................ CTGGTTTGGCGCCTTGTGGCAGGGCGTCAAAGACAA 15440 28 100.0 36 ............................ GTCGGCGAGCAGGGCGCGGGCGAAGGGTTGAGCCAT 15504 28 100.0 36 ............................ ATCAGCGGGTTGGCGCCGAGGCGAGAGGCCATGTCC 15568 28 100.0 36 ............................ GGTGGAGATGGCGACGGCACCGGCGACGGCGATGGT 15632 28 100.0 36 ............................ AGGTTGGTACAGGCGGTGACACAGGCGGTGACACAG 15696 28 100.0 36 ............................ ACGGGCGAGGATGACGACGGACGCCGCATCGCGTTC 15760 28 100.0 36 ............................ AGACCAGGCTCAGGACTCTTGACGAATCCGCCACAC 15824 28 100.0 36 ............................ CGGATTCACTGACTTCTTGCGCCATGCCGACGATCC 15888 28 100.0 37 ............................ AAAGCCCGGCTCGCAATCAATGCCCTGACACTCGCGG 15953 28 100.0 36 ............................ ACACAGCCCGGGGCTCGCGTGCTCCGGATCAGTAAG 16017 28 100.0 36 ............................ GACGAGCAACGCCTTGCCGTCGGCACGAGCGTTGGT 16081 28 100.0 36 ............................ GGGTACACCCGGACGGTCGTCGACCTGTTCGGGATC 16145 28 100.0 36 ............................ GTGTATGATTGGCGGAGCGCACCACGCGCCCTGCTG 16209 28 100.0 36 ............................ ACCGCCGGGTCTAACACTGGGAGATCCCCAGATCCT 16273 28 100.0 36 ............................ GACTGGGAGCCGCTGGCGGTCGACCCCACCACCCTG 16337 28 100.0 36 ............................ AGCATCAGCGAATTCTTCGACGCCCTCCCGCTAATC 16401 28 100.0 36 ............................ CGTGCTCGGTCACTGCGTTCCCTCGATTGATTTGAT 16465 28 100.0 36 ............................ GCAACGTCGGGTGCTATACTCATCCACGTCATCATT 16529 28 100.0 35 ............................ CGGCTTGCCAGCTCCAGCGCCGCGCTCGCAGCCTG 16592 28 100.0 36 ............................ TGAGCGAGCGCAGCGAGTGAAGGGTTGCCGCGAATG 16656 28 100.0 37 ............................ GCTTCCGCCCTTATCGACTTCCGCCCACTACTCCCAG 16721 28 100.0 36 ............................ GTCTGTCTGAGTGCCTGCGATTTCATTGGCAAACAT 16785 28 100.0 36 ............................ CCCCCACCAGCAGCTCGCGCTGTACGCGGTACTCCT 16849 28 100.0 37 ............................ ATCCAGCGGTATATCGCGAGCTACGATGGCGCGGCAG 16914 28 100.0 36 ............................ GTGGTTTGCCCGGTCAGGCGCGACAAGTGTTCAGCC 16978 28 100.0 36 ............................ TCCCCGACGGCGAGGACACGCCCGAGGCCCGCGCCG 17042 28 100.0 36 ............................ TACGTCAGTCCTCAAGGGAGGCGACCAGGGCCTCCT 17106 28 100.0 36 ............................ GGAGTCTGACGCCGCCTATCTGGCGGATTGGTCCGA 17170 28 100.0 37 ............................ CTCGACGACCTCGCCAGACCGAGCGACCCGATAGTGC 17235 28 100.0 36 ............................ ACAGCAACGTCGGCTGGTCCACCTGCACGCGGATGA 17299 28 100.0 36 ............................ CTCACGTCCGCCAGTGCTGCCGCGCTCGATAGCGCC 17363 28 100.0 36 ............................ GATCACCAATCCGTCCAGGCGGCGATACACGGTATC 17427 28 100.0 36 ............................ GTCGCCGAGGCCCGGCAGGGGGTTCAGGCCCTCCGG 17491 28 100.0 36 ............................ GGCGATGGGGGCGGCGATGCGCTCGTGGAGACCGGT 17555 28 100.0 36 ............................ CCCCTCGAGTTCGATATGGCGTTCGGCACCGGCGAC 17619 28 100.0 36 ............................ CTGGCCGACTGGACCGCCGCGACCGGCAGCGCCACG 17683 28 100.0 36 ............................ CGACGCGCCCCGTCCGGCCCCGTCGCCTCCGGCGCG 17747 28 100.0 36 ............................ CCGCGCCCACCGGCGGCAACCATCACCGCCCCCAGC 17811 28 100.0 36 ............................ TCGATCCGCCCGGCCTCGCGAAGCGCACGGAGCGCG 17875 28 96.4 36 .................T.......... CTTTCCTGGCGCGCGGTTTTAGCGTTGATGCCGCAC 17939 28 100.0 35 ............................ GCTACAACATCCAGCTGCGCGACTCCGAGGGCCAG 18002 28 100.0 36 ............................ CTGACCGGCAGCCAGGTCGAGTGCGGGCAGTGCCTC 18066 28 96.4 36 ....A....................... TCCGTGATCCACGGCCCGGGAGTGTGTTGGTTGCTC 18130 28 100.0 36 ............................ ATCATGTCGCTCGGGCTGGTGGTGATGACGTGGGCC 18194 28 100.0 36 ............................ CGTGGCTGATCCATCTCGCCCAGGCGCTGCACAAAC 18258 28 100.0 37 ............................ ATGCCGCCCGCGTCTCCGGCGTGCGGCTCACGTGGAG 18323 28 100.0 36 ............................ ATCGGCGCGCTCGGCGTCGAAAACACCACCATCCGC 18387 28 100.0 37 ............................ GCCCAGCGCAGCAGGACTCGATAGCTCGACTCAGCGA 18452 28 100.0 36 ............................ GCGCGGTGTTCGATGCGAGCAAGTACTTCGGCGACG 18516 28 100.0 36 ............................ TCCTGTATCCGGTAAACCGGATACCGGAGGTGGTGC 18580 28 100.0 36 ............................ GGCGGCATACGGCGCGCCGAGCGGATAGAGGGGCGC 18644 28 100.0 36 ............................ TCGGACGTCGAGCGCGTCGTGGTCATGAAATCGGCC 18708 28 100.0 36 ............................ AACATGGGCATCACCCTGCGCACCTACCGGCGCCAC 18772 28 100.0 36 ............................ ACCGTCGGCGGCGCGGTATAGCTGGCGGCCATCGGC 18836 27 96.4 36 ..............-............. TCGTCGAGCGCCTTGGGCGCGACAGAGACCTCTCTG 18899 28 100.0 36 ............................ CGTGTCGCCGCCTGTGTCGCCGCCCGTGTCGCCGCC 18963 28 100.0 36 ............................ ATCATTCGAATTCGTGATCTGGTTTGTACTGATCTC 19027 28 100.0 36 ............................ AAGCGTCTCGCCGCCCTCGAACAGCAGACAGACGAC 19091 28 100.0 37 ............................ CAGGCCGTGCATGCCGAGATCCGAGCTCTGACCGGTC 19156 28 100.0 36 ............................ CCGCCGCCGCAACGCCAAACGGTGCAGCTCTGGGAC 19220 28 100.0 36 ............................ ACCAGTACGCCGCCCGGCGTGCTGGCGACAGCGCCC 19284 28 100.0 36 ............................ GAGCGATCGCGCCGCTATCGTCTGCGGCGACGGCTC 19348 28 92.9 36 ........C...........T....... AGACGCGCAGCGACGCGCATAAGCCGATTGGCGAGT 19412 28 96.4 36 ....................T....... CCGAGCATCACGTTGGCGCTGCGCTGGTACATGTTG 19476 28 100.0 36 ............................ CTGGACGCCAGCGCGTCGGCAATGCTGCTTCGCAGC 19540 28 100.0 36 ............................ GCGCTCTATCGCAGCGGGCGCGGCGAGGGCCTCGAT 19604 28 100.0 36 ............................ ATGTCTGCCAGATTCTCGGGCAGCTCGGCGACGAGC 19668 28 96.4 36 ....................A....... TTTCAGGCGGGTCAGATTGACTGCCGAGGAAATCCG 19732 28 85.7 37 .........AT..........C...T.. GGAGACGGTAACTGTGTCGGTCCCGACTGCGGTGATG 19797 28 82.1 36 ........AT.........AA......T TCTAGCACGCCTGCCATCTTCATCAGTTGCTTGAGA 19861 28 82.1 36 A...........G.A..A..A....... ATAGGTCGCGAGTCTTTTCCATTGCGTGATAGATGC 19925 28 78.6 0 ............CTC.....A.A.C... | ========== ====== ====== ====== ============================ ===================================== ================== 77 28 98.7 36 GTTACGAATCCCTATAAGGGGTTATGAG # Left flank : GAAGCACTTGGACTCGAACGACAGGTTCTCGAGGTTTCCGAGTACGAATCATTCAAGCGGCGGGCTTAATCATGTTCATGCTCGTCACGTATGACGTCGAAGCGAAACGGACCAGAATTTTCAGAAAAATCCTGAAGCGCTATCTCAACCACGAACAATATTCTGTTTTCTCTGGAGACATGACCGAAGCGGAAGCCGTGCGCTTGCGCCAAGAGCTGAGCGCAGCCATGCTCCCAGAGGACAGAATCACCGAAATCACAGCAGAAAACCGCAAGAATGTAGAGGTCACCCACTTGATCAAGGCAAAATCCGGCAAAGGAGCAGTCAGTCGTAAAGCGGACACCAGACACAAGACCGATTACGGCGTCTTGTAGCCCCCAGACTTCTATCGCCTGTGAAGTTTCCAACTACAGACTCCGACGCACGGCCATCAGCCTCTACACAAAGAAAGTCAACACAAACATCGTTCAACACTACAGGAAACACATCAAAATCGAGGG # Right flank : GCAGCCTCTAAACAGATCTTGGGGATGTCTGGCATGGACGACACCCCCTATGAGAGCCGACAGACCTCACCCAGCGGCGTGGCGCTGGAGACGCACCAGATCAACATCTGGTGTTAGGATGGGGTATGGAGCGCCGTCCCAGGCGGTATGCGCTCGCGTGTTGACACGGCCCGGATCGGGGCCGCACGCAATGCTGCAACATGGATGTTCACTCAGTGCCCCACGCCGCTCACCGTCTGCCGGACGGCTCGCGATGACGCTCGACGAGTCGGTCTATATCCGTCGTCTCACCACCCTCGGTGACACACAGCCGATCGCCGCCAGCGCCGATATCCGCGCGGCCAATGGCAGCAAGTTGCTGGCCCGTGGCGCGCGGATCGATCGCTCGGTGCTGGAGCGATTGCTGCGCCACAAGCTGCTCGAACCGATCGACCGCACCACTCGCCTCGCCGAGCGGGTCGATCGCACCACCTTGCTCGAGACCATCGCGCGCCTGCTCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACGAATCCCTATAAGGGGTTATGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-35] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 31-214 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHFJ01000175.1 Marichromatium sp. AB32 NODE_194_length_228_cov_4.267327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 31 37 100.0 36 ..................................... GCGACTACCTACCTGGCGTACGAAAGGGCAAACTTG 104 37 100.0 37 ..................................... GCCACGGTGAAGGCGCGAGCATGCGCCCCGCGCACCA 178 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 100.0 37 GCCGCAATGCTCAATCCACTACAACAAGGATTGAAAC # Left flank : CGACCCTGACAAAGCGGCTGCTTGCGGCCGG # Right flank : TCAGCTCGACCCTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGCTCAATCCACTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 41591-43090 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHFJ01000024.1 Marichromatium sp. AB32 NODE_24_length_54502_cov_5.790639, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 41591 37 100.0 36 ..................................... CGTCCGTCATCATGGTGTGCGGTTCCCGTTCCATGC 41664 37 100.0 36 ..................................... CTCCCGCCTGCGCCGCATGAGCCGCCCCGTCGGCAG 41737 37 100.0 37 ..................................... GCCTCAGTCAGGTGCAGCACGATCTTGCCGAGCTGCA 41811 37 100.0 35 ..................................... CCTGCGTGCGCGCCGCTGCTGGTGGTGGTGCTGGC 41883 37 100.0 36 ..................................... CCCACAGCCACGCATGTCGACGTGTCACGGACGTAC 41956 37 100.0 36 ..................................... CCGCAGAGTTTGAGGCGGTCCCCGACATCGTAAAGC 42029 37 100.0 36 ..................................... CACTATGTCGGCACCGGCTGCGGACTATTGCGGCAC 42102 37 100.0 37 ..................................... CGGGGTAAGCTGGAGAGCCAAGCAGCCGCATACGCTG 42176 37 100.0 37 ..................................... GCCACGGTGAAGGCGCGAGCATGCGCCCCGCGCACCA 42250 37 100.0 36 ..................................... TCAGCTCGACCCTGACAAAGCGGCTGCTTGCGGCCG 42323 37 100.0 36 ..................................... GCGACTACCTACCTGGCGTACGAAAGGGCAAACTTG 42396 37 97.3 37 ........................A............ AGCTGTCTCCCGGCTACCGTTGCGTCTACGAGATGGC 42470 37 100.0 36 ..................................... GTCGCATAGGCCGTGCCAGCCTGCACGTAGACGAGG 42543 37 100.0 36 ..................................... ACCATGGACGGGGTGAGCCGGACCAGCGCCGTTAGC 42616 37 100.0 36 ..................................... CGGCTAAGCATGTAGAAGAACTGGGCGCGCGAGAAG 42689 37 100.0 36 ..................................... GTGACATACCAGCCGTGGCTGCTCACCTCAGCGCTA 42762 37 100.0 36 ..................................... CCCGCCGAGGGCGTGGCCTTCGCGTTGCGCGTGCTC 42835 37 100.0 36 ..................................... AGCCACTGCGAGCGTGTTTCCATGGCGCGGCGCCGG 42908 37 97.3 36 ..............C...................... GAGCAGTCCGAGGCCGCGCACAACACCCGCCTGTAT 42981 37 94.6 36 ...............T................A.... GCCCGAGCGTCGAGCAGCTGATGGCGGATCGCTACG 43054 37 73.0 0 ..T............AA.TC....TG..C...A.G.. | ========== ====== ====== ====== ===================================== ===================================== ================== 21 37 98.2 36 GCCGCAATGCTCAATCCACTACAACAAGGATTGAAAC # Left flank : GCTGTGGCTCGCCGACGGCACCATGGCGCCACTGGACTACAAATACACCCCGCGCCGCGAACAGGTGTTCAAGACCCATGAAACACAGATCCTGCTGTATGCGATGCTGATCACCGAGACGTATGGGTTGCCGGTCGAGCGCGGGTTCGTCGCCTATATTCGCGACGGCAGCCATCTGATCGAAGTGCCCGTGAGCACGGTGAGGATCACGCAGACCCGGCATCTGATTGACGAGATCTTTGATATCATCGAGACAGGCAGACTACCGGCGCGTACCCGCTCGCCCCTGCGTTGTGAAGACTGCTGTTACAAAAATATCTGCGCTTGATCGCGCGTGTGTTGCAAGTCTTTGAATGTTTTGATTTTTTGTGAGTTTTTTCGATGCGGGGAGCGCTTTTTTCAGGTGTTTTTAAGCCGATTCCCACTCTGAAACGCACTTTTAGAGCACTTGTTTTTCAGGGTTATGTAACTGAATTTTATGCTTTTTTAGAGAGTTTGCG # Right flank : CGCATGCAATACGCTTGGCCGCCGCAAGGCTCGAAATCGAACGTGCGAGATGCTTGCTTGATGAAAACCGGCGTGCCCATTGAGGGTGCGCCGGTTTTCTTTTGCGGTGATGGATTAGTGTTCAGAACCGATCGCAATCACCGGGCATCATCGGGTAGCCGCCGGGCATCGGGCCCGGGCCGTGGTGGCGCATCGGCGCGTGGTGGCCGCGGCGCTGCATCGGGGTGTCGAGGGCGGCGCGCTGCTCCTCGGTGAGGATCTCGGCGACCGCCTCGCGCAGCTCGGTGCGGGTGAGGTCGAGCTGCTGGTGCTGGCGCTGGAACAGCTCGGTGAGCGTCTGGGTCTGCTCGGCGGTGAGGCCGACGCGCTCGTCGAGTCGGTCGACGCGGCGTTCGATGCGTCGCTCGCTGAGCCGGTCGCGCTCGGCGCGCTGCGCGTCGGTGAGCAGCTCGTTGATGCGCTTGCGGGTCTCGAGCTGCTGTTGCTCGCGGGCCTGACGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGCTCAATCCACTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //