Array 1 247213-251755 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDYS010000002.1 Geobacter chapellei strain DSM 13688 NODE_2_length_342183_cov_229.924079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247213 29 100.0 32 ............................. AGAGAGCCCAGCAGTAAAACAGGCATCCTGCC 247274 29 100.0 32 ............................. TTATTAATCCTGTTAATTAGGGGTTAGGTCGC 247335 29 100.0 32 ............................. TCTTCGTTGTAGCCTTGGGCCTGGTCGACTTC 247396 29 100.0 32 ............................. TAATGCAACCCACTGTTGGCCATAACTATCAG 247457 29 100.0 32 ............................. GAGGTAATTATTAGAAGCATGGTTTTGACTAC 247518 29 100.0 32 ............................. AACATAAGCTCTAAGACCATGAGAAGCAGTTG 247579 29 100.0 32 ............................. TTCTACAGCCCCCCATCCGTCTCTCAGGTCCT 247640 29 100.0 32 ............................. GCCGAACGGTATGAGTTGAGGGCAAGCCGATG 247701 29 100.0 32 ............................. GTAAATAGCTTTTCTCCATCACAATCATAAAG 247762 29 100.0 32 ............................. CGAAACACGTTCGCCTGATCATCCCCGCCCGG 247823 29 100.0 32 ............................. ACTCCAGATAGGCCCTGATCGGACCATCACCA 247884 29 100.0 32 ............................. TATCTATTCCAAGGTGCCGATGATACTGGAAG 247945 29 100.0 32 ............................. CAGAATAATTATTGTCGACTGGAACGGCCGGA 248006 29 100.0 32 ............................. CAGTTTCATTATCTGAGCGTACAGCCAGCAGT 248067 29 100.0 32 ............................. TGCCAGTTGTCCAAAATCAGCAGCGGACGCAT 248128 29 100.0 32 ............................. TTGATTGTGTGATTTAAAATGGTCACTCTTGA 248189 29 100.0 32 ............................. AAATCTGTTCCGGTATCATATCTACGGGCATT 248250 29 100.0 32 ............................. GCATGAAGGTTACACAGAAACTGGCGGCATTG 248311 29 100.0 32 ............................. CCGATAGTTGTTTGTAGTGCCATATGTGCAAT 248372 29 100.0 32 ............................. AACTGTTCCTTTGCCCGGTACGCGGCTCCTAA 248433 29 100.0 32 ............................. ATCTGGGAAATTATATAGCTAAGTTTGGCATT 248494 29 100.0 32 ............................. CAGTCCGAAACCCACAATCATCTTGGTGACCA 248555 29 100.0 32 ............................. TTGTATGGTGAGCACCTTTTAAAACCTAATAC 248616 29 100.0 32 ............................. CCTCAGTATTTGAACTGCCGGCCAGCGAGCGC 248677 29 100.0 32 ............................. GAACTGTACACCGGAGAAGCACCCACGCCGAG 248738 29 100.0 32 ............................. GCTGATCTGCAAAGCCATCTGGAACGGCAACA 248799 29 100.0 32 ............................. CTCTGCCAATTCATGTTTATTGAACTTGTCCG 248860 29 100.0 32 ............................. CCGGATCTGCTTCAATTCGGCGGCTTGCATGT 248921 29 100.0 32 ............................. TTGGATATGTCCTGAAACGTCAGGAGCGACTC 248982 29 100.0 32 ............................. CCGTGCCCGTTCTGCGGATGTAAACACCTGTA 249043 29 100.0 32 ............................. CTTGGTGCCCTGGTGGTCAAGTTCAAATCCAT 249104 29 100.0 32 ............................. GTCATTCCCTGGTTGCGTGCCTGCTTGTACAT 249165 29 100.0 32 ............................. CGGCTCTCCACACTTGGTACATTTCAGCGGAA 249226 29 100.0 32 ............................. CTGGTCATATCCACATTACGGCCATGCTTGAC 249287 29 100.0 32 ............................. GCGCTAGGGAACTGCCTGGCGGGGAGGGAGGG 249348 29 100.0 32 ............................. CAAGACTTGCCGGTCTGGCTGGTCCATGTGTA 249409 29 100.0 32 ............................. GCTGACTGTTTGTGGGGCCGCAGCGGATCGGC 249470 29 100.0 32 ............................. CTCACCATACCGGCAGGCGGGAGCATTGCATG 249531 29 100.0 32 ............................. GTATTTGAGAAGCGTTACGACTCTCTGCAAAA 249592 29 100.0 32 ............................. CCCCAGATTAGGGGCTTTCTTTTTGACTATTC 249653 29 100.0 32 ............................. TCCATGCTCGGATTCGCCGCGGGAGAGATCGA 249714 29 100.0 32 ............................. AGCGTTCGCAGAGAGTCAAACTGTCAATTGAG 249775 29 100.0 32 ............................. GTTCGGGCGGCGCTATGACAAGCGATCTGCTT 249836 29 100.0 32 ............................. GGCAAGGCACCACTGCGCCTTCCGCCAGATTC 249897 29 100.0 32 ............................. TCTCCGCAGGGAACCGAGGATAGTTTATCAGC 249958 29 100.0 32 ............................. AAGTAGGGAGGTAGGTCATGGGAGACGGAAAC 250019 29 100.0 32 ............................. AAGTAGGGAGGTAGGTCATGGGAGACGGAAAC 250080 29 100.0 32 ............................. CTCCTGCCGTGTCATACTTGGCAAGGGCCAGA 250141 29 100.0 32 ............................. GGGAAATGAAATGGATAGCGAGCCAATCAAAT 250202 29 100.0 32 ............................. TTCTGCGCGCCTGGTGGAAATTTCTGCCAGGG 250263 29 100.0 32 ............................. GCCAATGGGAGAGCGTTGCAGCCGACCGCTAC 250324 29 100.0 32 ............................. TCGGCTGGTTTGCCTACGCTGGTTGCTATGAC 250385 29 100.0 32 ............................. GTTGGCCCCGAGGGTGTTCGTTCTGATGTGCT 250446 29 100.0 32 ............................. ATATCCGCCACGTTTTGGGTATGGGTAGCCAT 250507 29 100.0 32 ............................. TCAGGGCAGGTTTTGCCCTGCACGACAGCGGT 250568 29 100.0 32 ............................. GCATGCTGTACCGCCTTATCGACTATGGCTCG 250629 29 100.0 32 ............................. CTAAATGAGCACCAGCCCAACGGGATCGAGCC 250690 29 100.0 32 ............................. ATCAAAGAATCAAAGGCATATCGTGACCTACC 250751 29 100.0 32 ............................. TTCTTCAATTAGTAAGCCCGTTTGACCCTGAC 250812 29 100.0 32 ............................. GCATGGTTCAAACTGCCTCCCCTGTTCCTAAA 250873 29 100.0 32 ............................. GCGTTCATGGGCGTAAATCCCGTTGGCGAATG 250934 29 100.0 32 ............................. TTGATTGTGTGATTTAAAATGGTCACTCTTGA 250995 29 100.0 32 ............................. ACTTGTCAATAACCGCTCCCTCTCTTTCTCCT 251056 29 100.0 32 ............................. GGCTGGTTCCTTCCGAGAAAAGGGATCAAGCT 251117 29 100.0 32 ............................. CTAAATTCAGTGTGCGCGATACCAGAGGCATG 251178 29 100.0 32 ............................. ATCGTCGGGCCGGCCACGGCTCCGATCTGCGC 251239 29 100.0 32 ............................. CTGGCCGCACTACTGGCCCTGACCGTTGGGAC 251300 29 100.0 32 ............................. TTTGATTCGTCATAGTAAACGAATAAACAACA 251361 29 100.0 32 ............................. CTGGAAGATAAACTGACGGTAAAGGTGGTTTA 251422 29 100.0 32 ............................. AGGATCAATACACTCTGGCACTGCATCCATAG 251483 29 100.0 32 ............................. GGGTACTGTTTACCGGGCCGAACAAATTGAAC 251544 29 100.0 32 ............................. AAATCGTTGAACGGGCGAACAAATGGATTGTT 251605 29 100.0 32 ............................. GCATTAGAGCACAACGAGCAACTCGATGATTT 251666 29 100.0 32 ............................. GTGGTTTAAATGTCCGATGAAATCGACCAGGC 251727 28 86.2 0 ......................-..TAT. | C [251746] ========== ====== ====== ====== ============================= ================================ ================== 75 29 99.8 32 CTGTTCCCCGCAAGCGCGGGGATGAACCG # Left flank : AGATCATTCCCATGATTGAAGAGGTGCTGGCTGCCGGAGGCCTTGAAGTGCCCAAAGCCCATGAGGAGGCGGTTGCTCCGGCAATACCCAACAAGGAGGGGATCGGCGATGCTGGTTATCGTGGTTGAGAATGTGCCGCCTCGCCTGCGCGGACGGTTGGGGTTATGGCTGGTTGAAGTACGGGCCGGCGTGTATGTAGGTGACGTCTCGCGACGGGTGCGGGCAATGATCTGGGATAATATTGAAGAAGGGCTTGGTGAAGGCAATGCTGTCATGGCCTGGAGTACTAATACCGAGTCGGGTTTCGATTTTATGACCTTGGGAGCTAACAGGCGTATCCCGGTGGAACTGGATGGTGTGAAGCTGGTGTCATTCCTGCCTCCGGATGAGCAGAAAAGGGGTGTTTCGCCTTTCTGAGTGTGAGGGGCAGATGCCTCTTTAATGTTGGTAGATTTTTAAATGCATGAAAACCTCAATTGTTTTGAGGAAGTAGAAGAAGT # Right flank : GATTTGCGGAATGGTGGTTGAAATTGCTGAATAAATTTACGGGCGGGATGGTGGATGAATACGTGGGCGTGCGAACCGGGAGTATATCCGGTTAAATCTGTGAGATGCGCGAATGAAAATGAAAATCCAAATTAAGCTGATCTCCGACATCCCGCGACCGTGCGACCACATGCGGTCGCCCCTGCGAATGCCGTACAGGCGTTATCACAACAACCCCAACACCCCTTTCAGGCTCTGCTCCACCGCCATCATTTCTTCTGCGGTGAGACTTGTCAGGGGGCCTTCACCGAAGCGGTCCTTGTCGAGCGCACGGGGCTGATCAACGACCACTTGGCACGGCTTGAGAAGGCGGTCGCGTGGTTCAATCATGATGCGCCAACGTTTGAAGGCGGGATAGACTTGTGTGGTAAGCGGCAGGATAACGACCATCGGCGTGCCGCTCTGTGTGAGGGCGTTGTCCTGAATAACCAAAACCGGTCGGATCTTGGAAATTTCGTGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCAAGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //