Array 1 11365-11750 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYT010000367.1 Frankia sp. AgW1.1 NODE_249_length_12504_cov_18.836163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================================================================== ================== 11365 23 100.0 98 ....................... CCGGCCGGGCAGATGTCGCAGAGCATGGTGTCGTCGTCCCCGCCGCGCGGGGATCTTCCCTTCCCGGCCACCCAGCCCGTCCGCGGGACCGTGTCGTC 11486 23 100.0 38 ....................... ATGGGCCCGTCGGTGACCGGTGCGTTCACCACGTCGTC 11547 23 87.0 97 .T..............A..C... CTGTCCGCGACGGCCTCGTTCACGGTGGTCCCGTCGTCCCCGCCCGCGGGGATCTTCCGTCAGACACCAGGCAGCTCATGCGACGTCAGGCAGTCGT 11667 23 95.7 37 ................C...... GTCACGCAGCTGCTCGCAGACGCCCACGCCCTGTGGT 11727 23 91.3 0 .....A.....A........... | A [11730] ========== ====== ====== ====== ======================= ================================================================================================== ================== 5 23 94.8 68 CCCGCCCGCGCGGGGATCTTCCC # Left flank : TCAGCCCCAGTCCAACATCACGAACCCGAAGAGGACCAGGCCCCGCGAACAGCTGTGGAAAACCCTCCGCCGCACGGTCCTCAGGAAGGCCATCCCCAGAACACCGCGAACCGCATGACGAGCCACAAACGCCGAGGCCATTCACGAGGACTCATCTCACGGCGCGATCGCACGTAAGGGCCACCGCGATGGCGCCCCGCAGGAACGACGCCCACATACCCCGCGGCCTGACCGACCGCTCCCTGATTCACCGACCACCGGCGTCCCAGCAGACGACTCCCGGCGCCGCCGCAGCAGGTCAGCGTGGACAACGCAGGCAGGTAGTCAGTCAGTCCACCGTCGCACCGAGCGGCGGCTGGCCAGACAAGAAGCCGCGCCAACGAACCGATGTGCTTTCCTGTACTCGGCGGATAAACTCGCAGGTCAGCAAGCGTCGTCCCCGCCCGCGCGGGGTTCTTCCGCCCTGAGCGAGCCGGAGACTGCGCGAATCCTCGTCGTCC # Right flank : CGGTAAGAGCGTGGCCGGCGTGAAGCGGGGGCTGTCGTCCCATGGTCGCGGCCCAGTCCAGTCCGGCATCCGACGACCCCGCCGTAACACAGGCACGACGCACGATCGAGGAGAGCAACGCCAAGCTGACCCGCTACCGGGCGGCGTTGGACGCAGGAGCCGACCCCCATGTCGTGACCGCATGGATCGCACAGGCCCAAGCCGAGAAGATCGCCGCCGAGCGCCGCCTCCGCCAGGCCAACGAGGACCAGGGAAGACAGCTGACCCGCGACGAGATCAGCGAAATGATCAACTCACTCGGGGACATCGCCGTGGCGCTCTCTGCCGCCGAGGCCGCTGAAAAGGCGGAGCTGTACCGCCAACTCAACCTGCGCCTGGCCTACCAGCCGGCAACCAACACGGTGCGAGTCGCCGTGAAGATCGACTCTAGCTACCGTGAGGTAATGGATCGTGTCCGAGGGGGGACTTGAACCCCCACGCCCGTTAAAGGGCACTAGCAC # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-3, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCCCGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 5798-5940 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYT010000325.1 Frankia sp. AgW1.1 NODE_70_length_38441_cov_16.832421, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================== ================== 5798 23 100.0 37 ....................... TCAGGCAGCGCCCGCAGGACCCGCCGCCGCGGCTTCG 5858 23 100.0 37 ....................... CTGGACAGCGTCAGCAGGATCTGCCAGCCCGGTTTCC 5918 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ===================================== ================== 3 23 100.0 42 CGTTCCGCGGAACGCGGAGATCG # Left flank : ATGGACACGCTGCCCTTCCTGCGCCGCAACCTCTGGGACGCCGGCGTCGAGGACGTCGTCACCGTGGTCGTCGGGCGCACCGAGGAGGTCGGCGGCTGGTGGACGACCCCGGTCGCGCTGCTGTTCATCGACGGTGGCCATGCCGAGGAGCAGGCCCAGGCTGACTACGCGGCGTGGGCCCGGCACGTCGCCCCCGGCGGTGCGCTGCTCATCCACGACGTCTTCCCCGACCCCGCCGACGGGGGCCAGGCGCCGTACCACCTTTACCTGCGCGCCCTGGACGAGGGCTTCAAGGAGCGGTCCCGCACGGGTTCGCTGCGGGTCCTCGAACGCGTCCAGTAGGGGTCCCGGTTCGGGATCTGGCACCTGCGGCTTGGCCGCGCCTCGCCGGCCGCCGCCGCGTCGGACGCCCGCGCCAACCGGGCGCAGGCCGACGCCATCGCGAACCGCGCCCATTCCGCCCTGGCCGGCTGACGGTGCCCGCGGCATCCCGCCAGCCG # Right flank : GTTTGGTTAGCCCACGCGGCGGTCAGCCCGTGACCGGACCGCCGCGCGGTCGGCCGTTCCGGTCCAGCCACACGTAGTCGTCTCCCACCCGGACGCCGCCGAACTCGACCGGCGCGGACGGCACCGCGTCGCGGCCGGCGGTGTCGCAGGCGTACGGCCACTCGACGCCGGACCAGCGCTGGCTCCAGGACGTGCACCAGCCCGTCGCCGGCGTCTTGGCGGAGACCGGCCCGCGCTCCAGGTCGAGCACGGTCGTCTCACCTCGGACCCGCAGGACGTACCGGGTGTCGCTGACCCGCAGGACGAAGTCGCCGCCCTGCCCTCGGGCAGCAGGGCCCGCTCCGGCCGCGTTGGTGAAAACCCAGGAGTCCCCGGCGTCCCAGGACCAGGTGGTCCGCCCGGTCTCGAGATCGAAGCCCTCCAGCGTGACGCCGAAGTTCGCGAAGGCCGCGTTCAGCCCCGCTGTCACGGTGCCGCGGAACACGCAGCGCACCGGGTGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTCCGCGGAACGCGGAGATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 20624-21237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYT010000080.1 Frankia sp. AgW1.1 NODE_2_length_145510_cov_18.186478, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 20624 37 86.5 35 T.C..G.......G.......T............... GATGGTCCAGAACGTCTCTTGCTCCGATTCATCAC 20696 37 91.9 35 ..C..G.......G....................... ATCACTACTAGTCCTCACTTTTCAGTTGTGTCCGA 20768 37 94.6 37 .....G.......G....................... CAGGAGCCAGCCGAGCAAGACCCCGAAGATGAGCACG 20842 37 100.0 35 ..................................... AGTAGAACACCGGCCGCAATCGCCAGAACAATGCC 20914 37 97.3 35 .............G....................... CGTGTAGCCCGGTCCGTAGACACTCGCGCAGGTCT 20986 37 91.9 35 .....C.......G.........G............. GTCTGGGCCTTCTTGTACTGGCCGGCCAGGTGGAT 21058 37 100.0 35 ..................................... CCACCACGACCGACGTCATTCAGGTTCGCGAGCTG 21130 37 97.3 34 A.................................... TTGAGGCCACCGGCCTGGTCCGGGGTCAGTGTGT 21201 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 95.5 35 GGTGCAGGTGATCACCAAATCCGAGTCGGATTGAAAC # Left flank : CCACCTGCCCCGCCGCGAGCGCCCGGGTGCGCGCGCCGTCCCGTCCGGCGGCCCCGCCGACGCCGGCGGCGCTCGGCAGCGGGCCCAATCGGCCGACGCCCGGCCCCGGCCTGGACCGGACCTGCGAGCGTGGAGCCATCGCCCGTGCCCTCCTCGTCCAGCACAGGTACTGCGACTCCCCGCCCGTCGACCCGCAGCCGCGGCGGACTGGCCACGATCACCACCCCTCCCCGCGACCAGGCGGCCAGGCCAAGCAGCCCGACGTCCCGAGCAGACGGACCGGCTCGGCGCGCCGCGCGACCCCGTCACGAAGACAGCAGTCCGAGCGTTCGACGCCTTGACCGGCCCTGGAGAGGTTCTGGCTTATGATCGACATGCCTTCTGACCTGACCGGATGATGGATTTGAAGATCGAATGTGGCGAGGGATGCCGACCACCGCGAGGAGGTTCTGGTTTGATCTTGTAGAGCCGCAGCTCAGCCGGTGTACAATTCGGACAGC # Right flank : CCAGCGGGCCAGGATCCGGGCGCGGCGGTCAGCAGGGTGCAGGTGCCGCTCTGCCTGGCGATAGGCGAAGAGGTCGGGTTTGTTGTGGCCGGGTGAGTGCGTCCGTCTGGTGTGGCTGTCGGGGGGTGCGTCGAGCTACGGGGGCGGGAGATGGGTTCGCGGGTCGCTCGTGGTGGGGCGGGGTCCGGGGCAGGACCTCGAAGGCGCGGCACGGCTGGAGGCCATCTGGAAGGGGAATGCTCCTGGCCTCGGGGCCAGGACGCGGTTTCGGTTGTGGTGGTTGGGGCGTCGGGATGGCCGGGCTGGTGTGCCGCCCGTCGGCGTGTCGATGGTGGCCGCGGTTCCGGTGTCGCCGGCGGGCTGGGCGGCGAGTCCGGTGGTGCTGGAGCTCGCCTCGGCGGCCGCGGGTTCGCATGAGGTTCTGCGCGGGGTCGTGGCGGCGGCGCTCGTCGGCCTGGACACGCGGATCGCCGAGGTGTCGGCGAGGGTCGATGTGCTGG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGCAGGTGATCACCAAATCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : NA // Array 2 23513-24490 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYT010000080.1 Frankia sp. AgW1.1 NODE_2_length_145510_cov_18.186478, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 23513 36 97.2 36 ....................T............... CGGATGATCACGTTCAGGACATCGATGTCCTTGTCG 23585 36 97.2 34 .....G.............................. TCTTTACGGTCAGTGCCTTGATGACGTCCGAGAT 23655 36 100.0 37 .................................... TCGTCATAGACGCCCTTACCGAGTCGCGCTAGCAGGG 23728 36 100.0 35 .................................... TACGACCACGCCAGGCGGCGGCGCCTCGGTTTCGG 23799 36 100.0 41 .................................... TGTCCTCCAATGCTCGGCAGAGCGTCCCAGGGGATCTGGGA 23876 36 100.0 37 .................................... ACGGTCCGAACGTCGCGGCCGAACTCGACAGCCTCGT 23949 36 100.0 34 .................................... CCCGTGTAACCCGCTCCGCAGGTCTGCGGTGGGT 24019 36 100.0 39 .................................... AGGACGGTGGCGAACAGGCCGTAGGCCTTACGCTTGCTG 24094 36 97.2 35 ................G................... AGCCGGTGGACCCGCTTGCACAGGTACAAGAACCT 24165 36 100.0 38 .................................... TCCACCAGGACGCGGAAGGAACGCGATGGCTCTTGCGG 24239 36 100.0 36 .................................... GCGGAGGCCGGAGTCGATCCGGAAACCGCAATTACA 24311 36 100.0 37 .................................... TAGCCGTCCTGGCTCTGGTCGTACTGCTCGTCGAGGG 24384 36 97.2 35 .............................C...... GTGAAGGAGCAACGCGCAGGGACGTTCTCCTGGGG 24455 35 83.3 0 .C......-.....T.......G.....G......T | C [24466] ========== ====== ====== ====== ==================================== ========================================= ================== 14 36 98.0 37 GTCCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Left flank : CGGTCGAGCCGAAGCCCGAGGTCCCGGGCGAAATCGGCGACCGAAAGCCCATCAGCCCCCGGCATCCCACTGCCCGCGGCCACCCGCGCCCACGCCGCCCACAGCACCCGCGGCTGCGCCATGGCCTTCGGCATCCGACTCTCGCCCGCCGCCCCCCGCAGTGTGGCCGAACCGACAACAGGCAGGACCGGCCCGTCAACGGCACTACCCCGCCTCACGCCGAACCGCATCACCATGCCGCCGAACCTCCGTTCCGTCCGAGCCCGCCGCGCGCGGGCGGCGGGTCTCACCGGCGACAGACGGACGCGCCCGGCGACCTGGCCAGAACCTCCGACACGCCGACAGACCGAGCAGGTTCTGGCTGTAGCTCGACTTGTGCCCTGAGCTGCGAGGACGCCTATCTCAAAGATCCAATAGGCGATCACGAGTCGATCTTCCAGTCGAGGTTCTGGTTCGATCTTGCAAACCCGCAGGTCAGCCGGTGTACAATTCGGGCAGCT # Right flank : TCCCGCAGGACGGTATTTTGCAGCGAGCGCTGCGCCCCCGGAGATCGCCGAGTCTGATTCGCATAAATCCCGAGGTGTGTTGATGCCGGTGAACCTGACGCCGGGTGAGGTCGCGGATGGGGGTGCGCTGTCCGTCTGGTTGGGGTGACGGACGCCGGGGGGATCGCGGGTTGCCGGGGCGCTGATGCTTCGCGCGCCTGGGCGGTCGCGGGCCGTCGGTCTGCGCGAAGGGATCTGGGATGTCTGTGTTCGGCCTGGGCGAGGCGCGGTGGGCGATGTCGTTCGAGCCCGTGGGGAGCGGGGTGTCCGCGTCGCGCGGGTCGGGGAGGCGTCGCGGCTTGTCGGGAGGGTCCAGCGCCGAGCTTCTCGTCGGCCGTCACGTCCGCCGGCTCTTCGGGGGGTCCGGCGGACGGAGCGCGGGCGCCCGGCCGCGTCGGAGCGCGGTCGGGCTGCTCGTCTGCCTGGTTGTTCTTCTGCTGGCCCTGCTGGATGGCTGCGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 50837-50515 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYT010000080.1 Frankia sp. AgW1.1 NODE_2_length_145510_cov_18.186478, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 50836 29 96.6 44 A............................ TTACGTGGGTCTTTGAACCCCGGATCGAATACCTGGTTGCACCA 50763 29 96.6 44 .C........................... AGCCATTCGCGGATCACGCGCGAGCGGTCGCAGGCGGTTGCACC 50690 29 96.6 45 .......C..................... CTGCTGACACCTGAAACCTATAGTGAACAGTAGGGATGTTGCACC 50616 29 93.1 44 .....A...G................... CTTCCTGGCGATCGCCATGTCGTGGTGTTCGAGGGGGTTGCTCA 50543 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================= ================== 5 29 96.6 44 GGCCACCAGACACCGAATCGGATTGAAAC # Left flank : TCTCCAGCAGCACCAGCCACATCAGCCGGCTCGGCCGCGCGGGACCACCTTCTGTCACGTCAACATCCGCAAGTAGCGCGCTCAAAGCAGCTCCCCCGTTGAGCTGGTCATCGCCACGTGGTCCTGGGAATCCACGTGGGCAATGACGGTAACGGTTCGGATCCGGTCAGCACAGCCAGGGTCACGCACCGCGTTGGATTCGGGACTTCCCTGGGCTGGCCCCGGCCGGCTGTCACCCCTGTCTGACGGACAGGACCAGCGATGGCTGACGTCGATCGGTGAGCGCACCGGCCGCGCCACGAGACGATCTTCGAGGGGAGTCCGATCCGGGTGGGCCTTGGCCCCGCCGCGTCCTGGCTCGGCTTCGGAACCCCCGGCGCCCTCCGAATCCCCGGGAGGTTCCGAGGCTAGAACCAGGGCAAACCGGACGACAGTGACCGACTACCGGCAGGCACTCCGACTGCTACGATCGGAACCCGCAGCTCACGCAGGGTTGCACC # Right flank : TCCATCAGGCGGCCTCGAACCCGTGCAGGTACGCCAGCTCCGAGAGACGGAAGCCGTCGAACGGCTCGGGGTCGCCAGTGGCGTGCCTCGGAGGTGGCGGCGGAGCCACCACCTCCATATGTGCCCTACGTAGCGCGAGGGCCCCGATGAGGTTCATGAGTTGATCTTCCAGCGTCGACGTCTCGACCCGTTCGGAACCGATGCCGGTCGGCACGCCAACACCTGCCAGCGGAGGAGGCATTCCTCGGAGCTGGCGCTGATTCTCTATTGACACCAAGATGTTTTATGATCTTTCCGGAAAGATCGATTCTCGCGTTCGCCGAAGCGCACGACTCGCGCAGGAGCCGCAATGATGGTTTTGCCGCCTTTCCAGATCCGTCGCCAGCTTCGGGGCCGTGACGGCGGTGGTCGCCGGATCACGGGTCGCGCGACCACACGTCACCAGACCGCGGGGCCGTCGGCTTCTGGTGGATCGGCCGAGCCCATCGATGCGGCCGGAT # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:0, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCACCAGACACCGAATCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 4 61381-61771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYT010000080.1 Frankia sp. AgW1.1 NODE_2_length_145510_cov_18.186478, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================= ================== 61381 34 100.0 39 .................................. CACCACGGCTGTAAGGCCGCCCGCGACTCCTACGAAGTC 61454 34 100.0 36 .................................. TGTGGCAATAAGCCTGTTACGTCGGAAGAAGGAGTC 61524 34 100.0 36 .................................. CTCGACGAAGACGCGGGTGCCTCGGTACTGGGCGTT 61594 34 94.1 39 ....T........G.................... CAGCTGTAGTTGTTCTTCGCGGTGTCGTGGTTCGAGGTT 61667 34 91.2 37 ....T........GG................... TGGTCGCACATGCCGGATCGGCCCGACTTGGGCTGTT 61738 34 85.3 0 ....T........G........T....CG..... | ========== ====== ====== ====== ================================== ======================================= ================== 6 34 95.1 38 GCACCGGCGACCACACACCGAACCGGATTGAAAC # Left flank : TCCCGGCGGTCCGGACCAGGCCCGCCGCCCTGGCGGCTCCGACCGCGGCCCGTCCCAGGAACGTCGCGCGAGTCCACCGCCGGCCGTGAACCGTGTACCCCGCCCCGGCCCCGGGCCGCGGCCGGGCCCACCCCGCAACCCTGGCCAGCCCTGACTCAGGGCTGGCGAGACCTACCCTTCGAATTCGAGAACTTTGTAGTTTGTCAGTGGCTGTCCACGGACGTCCGCTGGTGCAGGTCACGGGCCGTCCGGATTCCGTGGTCGTCCACGCTCGTCCGTCGTTGCCCGCCGGTTTGGCTGCCGGGCGACTGCTGCGTCGTCCCGGCAGTCCTCCTGATCCGGTGGGCCTCGCCGCGTCCTGGCTCCGCTTCGGAACCCCCGGCGCCCTCCGAATCCCCGAGAGGTTCCGAGGCTAGAACCAGGGCAAACCGGACGGCAGTGACCGACTGCCGGCAGGTACTCCGACTGCTACGATCAGAACCCGCAGATCACCCAGGGTC # Right flank : CGCGCGTACCCTGCCGATCGGCTCGACGGCGAGCTACGAGAGATCGTGGCGGCCGCTCGCGCCCTGACCGTTACGCGGGAGCCTTCGCAGCCGTAGGCCGCAGTTTGCCCGGCGCGGGGATCGCGAGGACGTGGCCCATGCCGACGGTGGTGCGGTCGCCGAGGCCCGCGTAGGTGGCGAACGTGGCGAGGGCGGACAGGGCGTGGCGGGCGTCGACGGAGACCGACGCGGCTTCGGCAAGCGTGTAGCGGACCGTGCCGACGGCGCCGCGCAACGGCGGGACCTTGGGTTTGACGAGGTGTTCGGCGCTGTGCAGGTCGAACTCGACGACCTGCAGGTTGCGCTCGGCGGCGTCGACGGCGCCGCCGAGGTCGAACGCGGCGCCATCGGGCCCGCGCAGGTCCGGCGCGTTCGTCCGCCAGCGCTGGGCCAGCGAGGTGAAGACCCATTCCGGCTCGGGGAACACCCGCTGGCGGCGGGCGCCCTCCTCCCGGGCCGTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCACCGGCGACCACACACCGAACCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 5 71157-71638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYT010000080.1 Frankia sp. AgW1.1 NODE_2_length_145510_cov_18.186478, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 71157 36 97.2 37 .C.................................. AGGAACGGTGGGATTCGAACCCACGGAGTCTGGCCTA 71230 36 100.0 38 .................................... CTCCGACCTCCAGAACATGTCGCCGAAGATGACGCCGG 71304 36 100.0 40 .................................... TACAGGTTCCTCCTTCGGTTGAAGCCACACACTGAGGCCT 71380 36 100.0 44 .................................... TACGCGAGTTCGGTCGCCAGCTCAGAAACCCGCTCATAGGGCCA 71460 36 100.0 36 .................................... TCCGAGGCCCACTCGATCCAGCTCGCTGGAATGGTG 71532 36 97.2 35 ...................................A GTCTGCGACCGCGCGCATCTCACTCGCGAGGCCAG 71603 36 88.9 0 ............................G...G.GG | ========== ====== ====== ====== ==================================== ============================================ ================== 7 36 97.6 38 GTTCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Left flank : CCGACGGCGCGCCCGCGAGCGCCCTCGCCGAGTCCGTCCAGTTCGTGGCGGCAGGCCTCGGCCGCGTCGGCGGCGCTGTGCGGCTGGCCCGATCGGCCGGCGTGCCACCCCGTTTCCCAGCAGTGCCGGAACAGCGATGATGGGGACATGCGCGGCGGTGTTCTCGTCCAATACGGGCACGGCGACGCCACGGCCGTCGAGCCGCATCCGCGGTGGACCAACCACGCCTTCCGCCCCCTCCCACGTCCCGGCGAGCCCGGCGTCCAGACTAGACGGACCATCTGGTCCACCGGCACCCGCCGCCGCGTCGAAGATCGTCAGCCAGAACCTCCGACCCGCCGACAAACCAGGGAGGTTCTGGCTGCTGATCGACATGCCCCCCGACCTGCGGAAACAGGTGCAAGAGTGATTGAACCGCTCGCTCGGCGTCGATCTCTGGCGGGAGGTTCTGGTTTGATCTTGCAAACCCGCAGGTCAGCCCGTGTACAATCCGGACAGCT # Right flank : GGTTTTCGCCGTTCGCTGGAACTTGCGTCGGTCCGTCGGTCCGTCGGTCCGTCGGTGATCGGTGGGTCCGTGTTGCCGGGATCGGGGTGCTCGTCCGTCTGGCTTGGCTGTCGGCGATAGGGCGGCGAGCTACGGGGGCGTCAGGTGGTATCGGATGGCGCGCGGGGCCGGCGGGGGCCGTGCGGGGGTGTCGTGCGCGAGACGTCGTTGGCGGGCGTCTGGAGCGGGCATCGGGACCCTTTGAGCCTGGGGGTTCGTACCCGGCTGCGGCTGTGGTGGCTGGGGCGTCGGGATGGCCGGGCTGGCGTGCCGTCGGCGACCAGGTCGGGGCCGACGGGCGACGCGCCGCCGGCGTCGATGGTGGGCTGGCTGGCCAGCCCGGCGGTTCTGGAGCTGGCGTATGCCGCCGCTCGGTCGCATGAGGCGCTGCGAGGCGTCTTGGCGGCGGCGCTCGGCGAGCTGGATATGCGGATCGCCGAGGGAGCCGCGCAGGCAGGGCT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 6 86696-87319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYT010000080.1 Frankia sp. AgW1.1 NODE_2_length_145510_cov_18.186478, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 86696 36 100.0 37 .................................... TTGCAGCGATGATTCCCCCGAGGGACATGATTTCCTA 86769 36 100.0 37 .................................... CTGGTGATCCACTCCGAAGACCGTTCGGTCAGACCCG 86842 36 100.0 39 .................................... GCTGTCGAAGGTGATGTCGAGGAAGACGCCCTCGGCGAT 86917 36 100.0 36 .................................... ACTTTGGCGGGCTGCGGAGCGGCCTGGACGGGTGGG 86989 36 100.0 41 .................................... GACCGCCACCCTGGCGTTGTGTAGGTTCTCGTCGTGGTCCC 87066 36 100.0 37 .................................... GAGCCAGACCCAGACCCGGGAGCCGGGTTGGTGTCGG 87139 36 100.0 35 .................................... GGCGATCAGGAAGGTCTGAAACAGACTAACCTTTG 87210 36 100.0 38 .................................... CAGACAACGTCTACCGCCTCCTTTCGTGTAGCGCGCCG 87284 36 86.1 0 ..T..C......................G....GG. | ========== ====== ====== ====== ==================================== ========================================= ================== 9 36 98.5 38 GTCCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Left flank : ATTGACGGCCCGCCCGCGATCGTCCTTGCCGCGTCCGCCCGGTTCGCGGCGGCTGGCCTCGGCGGCGTCGGCGCCGCTGCGCAGCTGGCCCGATTGGCCGGCGTGCTGCCCCGTTTCCAGGCGTGGCTGCGTCGGTGATGATGGGGTCATGAGCGGTGGTGCGCCCCTCCAACACGGGCACGGCGACGCCGCGGCCGTCGAGCCGCAGCCGCGGTGGACCAACCACGTCTTCCACCCTTTCCACGCCCCGACCAGCCCGGCGCCCGGACCAGACGGACCACCTGGTCCGCCACCACCCGCCGCCGCGTCGAAGATCGTCAGCCAGAACCTCCGACACACCGACAAACCCGGGAGGTTCTGGCTACTGATCAACATATGCCCCGACCTGCGGAAATATCCCAGAGAAAGATCGAACCGTCCACTAGATGTCGATCTCTGCCGGGAGGTTCTGGTTTGATCTTGCAAACCCGAAGGTCAGCCCGTGTACAATTCGGACAGCT # Right flank : CTGGATCGGGGATGGTGATCAGCGAGTTTGTGGTCGTTTGGGTGCGGGGTGTTCGTCCGTCTGGGTTGGCTGTTGGTGGCGGCGCAGCGAGCCTTGGGGGCGAGGAATGGGTTCGGATCGCGGTCGGAAACGGCACGGTGGTGTTGTGGGCGCGAGGCCGTTGGGGGATGTCTGGGGTGGGCCTACGAGCCTGGGGCCCGGACCCGGTTGCGGCTGTGGTGGCTGGGGCGTCGGGATGGCCGGGCTGGCGTGCCGCCCGCGGTCAGGCCGGTGCCGACGGGCGACGTGCGGCCGGTGATGGTGGGCTGGTCGGCCTGCCCGGTGGTTCTGGAGCTGGGGTATGCCGCGGCCCGGGAGCATGAGGTGTTGCGGGGAGGGTTGGCCGTGGCGCTCGTCGAGCTGGATGCGCGGATCGCCGAGGGGACGGCGCTGGTCGGGGTGCTGGCGGCGCGGGTGGCTGGGAGTCCGGCTGAGCGGCTGGTGCGTGAGGCTGAGGAGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 7 89409-89657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYT010000080.1 Frankia sp. AgW1.1 NODE_2_length_145510_cov_18.186478, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================== ================== 89409 33 97.0 40 ..G.............................. GTCAGCCAGCCACCGAGCACCGGCCCGCCGGCAATGCAGT 89482 33 100.0 42 ................................. ACGCTGGGATTCCGTGAGAGCGTCGGGGTCGACAGTGAAGTC 89557 33 100.0 35 ................................. TCGACCGATCTTCAAGAAAAAGGTAGTTGTCGGTC 89625 33 87.9 0 ..........A..G...........G....G.. | ========== ====== ====== ====== ================================= ========================================== ================== 4 33 96.2 39 CCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Left flank : GTCGAGCCGCGGCCCGAGGTCACGGGCGAAGTCGGCCACGGAGAGGCCGTCGGCCCCCGGCATTCCGCTGCCGGCGGCCACTCGCGCCCAAGCCGCCCACAGCACCTCCGGCTCCGCCATGGCCCGCGGCACCCCACCAGCAGCCGCCCGGCGCCGCGGCCTTCTCGGGCTGACGACGGCTCCGTCGCGCCTGTCGGGCACCCGCCCCTGCCAGCCGCCGAACCGCGCTCTCATCCCGTCCGCCCTCCACTCCATCCGGACCCCCGGCGCGGCGACCGCAGGCCTCGCTCACTACGGACGGACGGCACCGCGGCACGGCCAGAACCTCCGACACGCCGATAGCCCAAGGAGGTTCTGGCTTCAGATCAACATGTGCTCCGACCTGCGAAAACCCGGCCAGAAACGATCGAACGCCCCGCCGCGAGACGATCTCCATCAGGAGGTTCTGGTTTGATCTTGCAAACCCGCAGGTCAGCACATGTACAATTCGGACAGCTGTC # Right flank : CCTCGAAGTAGACGTGCCGCTCTTCCGCTGTGGTCCGCACCAGATCGCATATTGCAAGGCGGATGGAAACACCTGGGCGGTCGCGATCACTGGCAGTTTCGGGGCCTGATCCAGGAATCACGTACTTCGGGGGCGAACAGGGGACGGGCACCCAGCCGCGCTTTGGCGCGGCCAGGTGCCCGTCTGGGGAGGCCTGGTTTCGGTCAGCAGGTACCGGCGACAGCGTTGGCGTGGCCGGTGTAGACCCAGGCGTCGGAGAGGTAGCCGGGGGTGCCGTTGTAGGTCGTGTGGTCCCAGAGCGTGGTCGCGCCGTAAGGACCGGTCACCGAGTCGCCTTGCGCGGTGCAGTCGATCGAGAGCACGGTGTCCTTGGGCACGCAGCCAACAAGGCCCGTGTTCCCGTTGGGTCCGGAGCGCAGGTTCAGGCACGGGTCGATCAGGACTCGGCCGCTGCCCGCGGGCACCGGCTGCTGGGCGGTCGACGTCGGCTGCGTCGGTGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //