Array 1 229913-230343 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029476.1 Lactobacillus apis strain ESL0185 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 229913 36 100.0 30 .................................... ACAGTAATGGTCTATTTAAACTTCTATCAT 229979 36 100.0 30 .................................... AAAAGGTCTTAATAAGGTTCTTGACGCACT 230045 36 100.0 30 .................................... ATGTTGATTTTGATAGAGCCTTAATTAAGG 230111 36 100.0 30 .................................... ACTACAGAGAGTGCTAAAAAAAGCGCTAAA 230177 36 97.2 30 .......A............................ TTTACAACGTAAACGTTGTAGCACCAGATA 230243 36 97.2 30 .......A............................ GTTCAAATTTGAATCGCTGCAACCGTCCCT 230309 35 86.1 0 .......A.................-C......GG. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 97.2 30 GTTTTAGCTGGTTGTTAAATCAATGATGATTAGAAC # Left flank : AGTGAGAACATTTCAAAAAGATATTTAACTTTTGTAGTTAATAATTATGTAAAGACTATAGACGAAGAAAACAGAAATAAAGTCTTTAAAGCTTATTACAACCTAGAGACCGTATTGCATGATTCACTTTTACTAGAAGATCTTCCTATAGACATTGACTTTAACGAAGATTTGAAAAAGCTATTAAAGTTGTTGGAAATTCATTTTGATAGGAGTATATTAACTAATCCATATGCTATAATAGAAACTGTTCTAAAAATTCATCAAAATTATGATTTGGGGACAATTCCTGTATTTTGTAATGTAGCGCATTATTTTGATGAGCAGGAGTGGCAAGAGGTAGCTAATCTTGCTATGGAAGTCAATTCAAGTGTGATTTTTCTTGAATTTACTAATCCTCAAAATTTGAAAATATCTAAAAACATTACTTGTTATTATGTAGATCAAGATCTAGTCGATTGGTACTAACTGCTATATTAAAATTTGATGATAAAAAATCG # Right flank : CTGTTTTTATTGATATTTGTCAAGATCTAAATCAAATAGTGTTTCAATATCTGTATTAAAATACTTTGCTAATTTGTATGCAATGTTAATGGTTACATTGGTTTTAGACTTATTACTTTCTATCTTTCTAATATAAGCTACTGATACACCAGTTACTGTGGCTAAATTTTCCGGCTAAATGTCTAAATTCTGCTAATCTGTTGTGCATTATTACGCTCCCTAAGTGGTTTTTTGTTGGGTTCAGTATATATATACTATTTTATATGGAAGTCAAGCTTGCGGCGCTCTGTTAATATACTGATAGCTAGTGCTGTGCTTTCATGTATTTAAGGTTTTAGGTAGCTGTTAAATAGACGATAATTAGAAACAAAAAGCCTCTTTCTCCAATTAATTGAATTAATCCATGACATAGTATAATTACATAAAGAAAAAACGCGCCAGATAGAGCGCGCTTTTATTTTGCTAAAATAAAGTCTAAGTATGACTAGTTTTGGTCCAAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCTGGTTGTTAAATCAATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.70,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 479209-479969 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029476.1 Lactobacillus apis strain ESL0185 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 479209 36 100.0 30 .................................... TTTATCGTGTGCATCACTTACTGATTTACC 479275 36 100.0 30 .................................... TGGTAAATTGCTAAGCAAAGCAGGTGGCAT 479341 36 100.0 30 .................................... TTAAGTAATATTGACGCGGATAGATATTTT 479407 36 100.0 30 .................................... ACAGCAGCTATTAACGTACTAATTGCTCCA 479473 36 100.0 30 .................................... ACTATATGAACCAAAAGGCGATTCGATATA 479539 36 100.0 30 .................................... ACTATATGAACCAAAAGGCGATTCGATATA 479605 36 100.0 30 .................................... ATCCCTACTGATACAGTCACTACCAGTTCC 479671 36 100.0 30 .................................... ATCGTGATTATTGGAAACGCCGTTTTTTGT 479737 36 100.0 30 .................................... ATTATCTTTATCGTACGAACGTTTAAAGTA 479803 36 100.0 30 .................................... AAAATAAGCGGACTAAGTTGCGTTTAATAA 479869 36 97.2 30 .............................G...... TGACACTATTAACTGCTGAGGAAGTAATGG 479935 35 77.8 0 .......................-A.CC..G..GCT | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 97.9 30 GTTTTAGATGGTTGTTAAATCAATGATGGTTAGAAC # Left flank : CAATGGGTGAGTTTTATGCTGGTCAAGTCGTAGCGGAGTATCAAAATGCTCTTGATATTGATGGTGACCAGGAAATGATTGCCCGTCGTCAGAAAGTTAGTGTTTCAGAATATGAACAAATTTTTACTCAGGCACTTGAACTTCCTCAAGATAACCTTGAATTAGAGAGCGATGAAGAAACCGGTTATTGGTACTTTGCTGGAACTAAAGATCACGTTCGTCAATACAAGCAAAAATAAATTTAGACCCTAAAGTTGGGTCTTTTTTTATGCACATTTTTATAAAAAGTGAAACCAAAACATTAAGCTAATTAACCCTTGTGCTATAATTTAGGTGACTTAATTTTAGTCTAAAAGTTTTTGAACTAAAAATGTAGCTAGTTTTTAATTCAAAAGTGTGTTTTTCGCAATTACGAGGTAGTTGGGTTGACGAAAAAAACTTTGATAATTGCCGCAACTATTTTTGATTAGACAACATTAAAAAATGATGATAAAAAATCG # Right flank : TAATACGTAATTAAAAGAAGGCTGAAAATAGAGGCACTAAAAATGATCAGTGGAAAGCAATATAGCCAGCAGGAAGAATTAAAAAATAATCGAAGAGAAGCCTTTAAACGAGCAGGCATCCTTACTGATAAAGAACTCTATAGTCTAACGACAAGTGAGCGACTTGAATATGTCAAAAAACAAAATGAGTTACATATGCCAGTAACTGTAGAGCGTCACACACCTTATGATGCTAACTTTCAAGTAAAAAAATCAGGTAAAGAGAAAAAAGTAGCTGTTGACGCTAAGATTAGACATGCACAAACTAAGGGCATTATCATGAACGCTTTAGGTTTATTAGCCCTAATTGATATAATCCATAACTGGTGGGGACCTTCAAAATAGTTTCATTTTCTAAGAACAAGTGGTTATTACCTAGCCTAGGAGATGACAAAAGATACTAAATACTTTTGAATTTACGAAGTGTATCAGCTTTTGTTAGGATTAATTTATAATTGCTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATCAATGATGGTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //