Array 1 2617-1529 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAH01000128.1 Fusobacterium necrophorum DJ-2 contig0128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2616 30 100.0 37 .............................. GAGCTAAGAACAAATTTAGTTTTATCTACAGATAAAA 2549 30 100.0 36 .............................. GAAAAATTTAATGCTTTGACAGAACAATTTAACAAG 2483 30 100.0 37 .............................. ACTTATACAAGGCAGAAGAACTTTTATCTAAGACACA 2416 30 100.0 36 .............................. TTGCAATAATTGTCAATATCTCTTCTTCTATTATCT 2350 30 100.0 36 .............................. TTATTTCTATTATTTCATCATCTTTCATGTATCCCA 2284 30 100.0 36 .............................. TATCTTTAGATAAAGTATTTACTTATAAGAAAATCA 2218 30 100.0 36 .............................. ATAAAATCTGCGTTGCTATTCCGTACGCATCAACCA 2152 30 100.0 36 .............................. GTCTTTGTAATGGTATTCTTCTTTGATGATTTCATT 2086 30 100.0 35 .............................. GAAGATAAAGACATCAGTCTTTTTTATTCAAAAGA 2021 30 100.0 36 .............................. AGAATACTCATCCTTATTCATTATTTTTTCTGTAAT 1955 30 100.0 36 .............................. AGAAGATAGAGAAACATTCTCATCATTACTATCAAA 1889 30 100.0 37 .............................. TTCAACCAATTCAATTTTCCAATTTTTTTGATCGATA 1822 30 100.0 35 .............................. TTTACCTGGTTAATAATATTTTCTAAAATATTTTT 1757 30 100.0 36 .............................. GGAATAAGATTTAATATTATGGTCAATTCCGATATT 1691 30 100.0 36 .............................. TAAATAATACTTCAATATTAAGTTTCTTGCATATTT 1625 30 100.0 37 .............................. AACGACAGCATCGTATCTCGCTGCAAGCTGTAAAACT 1558 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 100.0 36 CTTATAATAGAAACAGATTGAAATGTAAAT # Left flank : GCATTTAATTGATTTTGAATGTATTAATGAAGTAATTTTAATAAGAATATTAGGAATGACACAACAGAATATACTGTAGATAAGTATCGAATGGAGGTCTTCATAGGAAATGAATTTTAACTATAAATTTTAAAGAGCTGATTACTATGTGGACTCGTTTTAGGTGAAAGCTTTCACTAATGATAGTATGGCAATATACCTTGAGGTTAATTGATAAAAATTTATTTAAGAAGAAATGAAAAAATAGATTAAAATTGTCAGTAAAATATATGAACAAGAATAAAGAAAAGTATATTAGAGCCAAATAATATAAGTTTTTATTTGTCGACCCTCAATAATGTAAATTTCCTGAGGGTTTGACAAACTTACTTTTAGTGAGGGATTAGGGATGATTTTGACATTTTTTATCAATTGAAATTAATAAAAAATGATACCATCATAACAGGTCGACAAATTTGGGAGTGAAAACTAGCTGAAATAAAGGGCTTTATCCTAGTCGG # Right flank : TTGTAGACTAGGTTCTTTGTCAAATCGTGTTGGTGAAAAAAACAAAATAATAAAATCGCTAGGGGAGGAATCTTTTAGATTTCTCCCTCTTTTAATATGCTGTTAGGATTACAAATTAAGATTCTTCTGCGCAAGTTTTGAAAACTTTTGTAACCATATGAAATCCGTTTCATCAACTTAATCTTTTGATGGAAGCCTTCTACAATTCCATTTGAGAAAGGACTGTCAATACTGTTTAAAATTTGGAAAGTAAGTTTTCTGTATGTCTTTAAAGTACGTGCTAAATGAAGATTATCACATCCTTTGTACTTCTCTAATAGAGAGAGAAAATTTTCTTTCTTCTTATGTTGAAATAGATAAAGAAAATTTTGATATATCCCATAGTATTCATCTAATTTTGGAATTTTCTTCAATAGGAAATTTACAATTTCTCCTGATGAAATATATTGTTTAAAAAAATAGTCATAGTAACGCTTTTCTGATAGAGAACTAGCTGATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGATTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 7526-7753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAH01000128.1 Fusobacterium necrophorum DJ-2 contig0128, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 7526 30 100.0 36 .............................. ATATGAACAATCAGGATAAAAACCAAGAATTAGATT 7592 30 100.0 37 .............................. AGAATCATCCGGTTTATATGTTTCCTTTGTTAAATCG 7659 30 100.0 35 .............................. TCATAGTCTGCTAGTTGAAACTCTCTTGCGATGTT 7724 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 36 ATTTAAATTTCAGTCTGCTTCGATTATGAG # Left flank : TATTATTTGTACATCTTCTATAAGGAATAACAAGATATTCTCTTGACAAAAAGAAATCTCCCTGATAGATGATGGCTCCTTCTTCATCGTCATCATCGTAATATCCAATATGTTTATTACCTTTATTATCAACATATAACACCGCTCCATACTTAAGTCTCATACCAAGTTTACCTCCATCTCATGAATTTTAAATATATATTTAATTATAAACTAATCATTTTTTAATATTTCATATCTATCGTATTCCAAAGTAAATTAAATTTTAAAATTATTATTATATTTCTACTTTCTGTCTTAGCACTTTTTTATAAAACTCCCAATATTTTAAGTATTTTAATGCCAATAGTATTTCCTATCATTAAGTAAGAATAATAAAAAATTATATTAAAAAACTTTAGAAAGAAAATACAGAAAAAAGTTCTCTCTCAGAGACAAAGAAATGAAAGTAGCACTAATATGAATGATTCAAGGCGATAAGCTAGGGTTTATACTGGATA # Right flank : GCCGCATAAGATAAAGTTCTTTATTTCAAATAATTTTTACCATCAAATTTGTCAACCTCTTGTAATTGTATCATTTTTTATTGATTTCAACAAACAAAAAATGTCAAAAATCATCTTTAGTCGCTTACTAGAAATAGTTTGTCGACCTCTTAGGAGATTTACATTATTGAGGGGCGACAAGCAAAAAAATACTCTCATATTATTTCATTTCAATATACTTTTTTATCGTTAACCCTTAAAAATGTTTTTAATGTTTTTCTTTTGGTAACAACTTAAAACATTTCCAGGTTCATACAAATCCTATTACAAATGAAACTCCTTTCTATCCTATTCCTTCTCTTTTGCCTTATTTATCTTCCCCAATCCTACCCAGAAATCATACTCACAAGAGACTATCTTTATCTCTTGATAAGAATTTATTGCTATCTTTTTCTCTATTTTCACTCCTTTAAGAAGATAAGACTCTACAGTCAAAGTATATTTCATCAACTCTTCACGCT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATTTCAGTCTGCTTCGATTATGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 2026-139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAH01000210.1 Fusobacterium necrophorum DJ-2 contig0213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2025 30 100.0 37 .............................. TTTTCTCTTTCAGGAATCTGTATTTGAGTTCCTGTCA 1958 30 100.0 36 .............................. TCATAAAAATTTCTATTTATCTGATTCAAATTAATT 1892 30 100.0 37 .............................. TTGCTTTTTCTTCTGTAAATCCATAATCCTCGATTAA 1825 30 100.0 37 .............................. TGTTAAATTTCCCTGGTCATTCTATGCCGGGTATATT 1758 30 100.0 35 .............................. TAAATATTATTAGAAATTTTTTTGTAAAAATCTCT 1693 30 100.0 36 .............................. TATATAGAAGAAGATAAAACTGGAATTAAAACTTAT 1627 30 100.0 36 .............................. TGCTATTAATACATTTAATGCAGCTCCATCTCTTAC 1561 30 100.0 37 .............................. AATAAGCTTTGCTTGAATCATAGATAATTCTTTTGGA 1494 30 100.0 36 .............................. TTTTTCACAGTTGATGAAAAACTCGACCACCAGTTC 1428 30 100.0 35 .............................. GTTATAGCTATCTTTGACTGTGTATTCCCATACTT 1363 30 100.0 36 .............................. TTTCATGAGCGTGTTTTACTCCTAAATCTTCGTAGT 1297 30 100.0 36 .............................. GTTGCTTTGTAGATTTCCCCAAGAATTTTGTAAAGA 1231 30 100.0 36 .............................. TATTTTCAGTGTGTTCACTGTTCTTAACATTTTGGA 1165 30 100.0 36 .............................. AACGGAACATGGAAAGATTGGAGTGAAAATTTATTG 1099 30 100.0 37 .............................. TGGAAAATGTTCCGAATTTGCAAAAAGAAGAAGTGTT 1032 30 100.0 36 .............................. GAATCATTTCTCCCACATCGTGGGATCTGAGTGGTG 966 30 100.0 35 .............................. CAAAATCTAAGAACTATGGCAATGACACTACTTTT 901 30 100.0 36 .............................. ACTTGAACATTTAAAGGATAATATTCTGTATTTGTC 835 30 100.0 37 .............................. AGAGCAGTTGATTTTGCATATAAAACAATGGGGACAT 768 30 96.7 38 ...................C.......... TAATACTTTTATCTGTACTTACAATTTCTAATAATTTA 700 30 100.0 36 .............................. CATTTCTCCTTTAATTCCCTTCTCCCAACCAGAGGC 634 30 100.0 36 .............................. GCCTATCCCCACCAAAACCAGTTTGCCCAATTCTTA 568 30 100.0 36 .............................. CCTGAATTCTACTCCCAGTTTAGTTAATCCGTCTAA 502 30 100.0 36 .............................. GTTAAAAAATAAAACTCTATCCATGTAAGCACAATT 436 30 100.0 35 .............................. TGGGAAATGAATTGATTATTACTGTTTATACTGAA 371 30 100.0 38 .............................. ATTTTTCATTTACACAGCAACTTGGAGTTTACCTATTT 303 30 96.7 37 G............................. GTATCTGCATCTATTTCTTGTAATGCTGCCTTAATGT 236 30 100.0 38 .............................. AAAGGTCGGTATATAGTAGGGTATCAAGATGGAGAAAT 168 30 93.3 0 ......................G..C.... | ========== ====== ====== ====== ============================== ====================================== ================== 29 30 99.5 36 ATTAGAGTATTACTAGAGTAGAATGTAAAT # Left flank : TTATTTCTTCAGG # Right flank : TGTTAAAAATTCTTAGATGAAGAAATCAGGAAAAATGAATGATTTATTGAGATAAATGTAATATAATCTCTTAAAAAATAAATTCATGTATAAAATTTAAGTTGTAAAATAAAGTGTCACACTAAAATAAAATAAAAAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 16502-18185 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAH01000065.1 Fusobacterium necrophorum DJ-2 contig0065, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 16502 30 100.0 37 .............................. GAGTATGCGAATGAAAAAACAAGAAAAGAGTTAATAA 16569 30 100.0 37 .............................. AATGTTAGATTGGAAACAAAAGCTTCTGTAAACTTCA 16636 30 100.0 36 .............................. ACTCTTGTTGTAGAAAGTGACAAGAGGGAAGCAATT 16702 30 100.0 36 .............................. ATAATGTTTTCGTTTTTATCCGCACTAGCACTATAA 16768 30 100.0 35 .............................. GAATCTTTAAATGGTAAACGTTTTTTTACACATTG 16833 30 100.0 36 .............................. TGAAAAAAGCAATTAGCTTGATTTCTATGGGATTTA 16899 30 100.0 38 .............................. AAAAACAAACATATATAAATAACGCTAGTTTCTAATAT 16967 30 100.0 36 .............................. GCATTTCTGTCAATGATAGAAAGTTTTTGGAATTTC 17033 30 100.0 37 .............................. ATAGTCATATTCTGATAATTTGAGATATGGAGAGTAT 17100 30 100.0 36 .............................. TTATTGTTTGCATCACAAAATTGAATCACTTCTTTG 17166 30 100.0 36 .............................. GCAATAGCTATATGCCATGTTTCTTTTTGAAATTCC 17232 30 100.0 36 .............................. GAAGAAGTGCAATATATCAATGCACATGGAACTTCC 17298 30 100.0 38 .............................. CTACATGATACCTATCATTTCCGCATTCTTTACATTTC 17366 30 100.0 35 .............................. TAAAGTGCCATAAGCACCACTTATAGTCTGATTTC 17431 30 100.0 36 .............................. CCACTTTTCCATACAATTACGTCCTGTTTTTCTTTT 17497 30 100.0 36 .............................. TTTGAAGAAAAATTTGAATTTGATGATGACTATGCA 17563 30 100.0 36 .............................. GCCACTTCAGCGTCATACAGTGCTTGGTGAGTTTGA 17629 30 100.0 36 .............................. CAACTTTTTTTTAAAATATCGAGGAATAGCGACTTT 17695 30 100.0 35 .............................. GAAGAGATACAAGCATTAGAAAAAAGAATAGATAA 17760 30 100.0 37 .............................. TATGATAACCCGGGACGGATATGACACGGAAGCTCGT 17827 30 100.0 36 .............................. TTTTAATTGCAGCTTTTTTTCATTTATTTCTAATTC 17893 30 100.0 36 .............................. GAAGCCCTGCTTGATAACGATGTTGAGTATTTGTCA 17959 30 100.0 36 .............................. CCTGAAAAATATAAAGTAATTCATAAGAACTCTCAG 18025 30 100.0 35 .............................. TCTTCCATGCAGTTGTCGTCTAAGTCGATATCGAC 18090 30 100.0 36 .............................. TAGTATGTTTCTGGATACTGTTTTGCAATTCCTTTC 18156 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 99.9 36 GACTAAATCCAAGTAGATTGGAATTTTAAC # Left flank : AAAAATTTAGATACTGTGAAGAAAAATTATTGAATCTTTCTTTTTATAATCATCAAGATAAAAAGAAAGAGGAAAGTATAAGAGTATTTCTTATAAGAGATAAAAATAGTGATAATTTTAAATTTGAATCAATATTAGACGATGGCAGTAATAAGATATTTATTTCTAAAAATGGAAAAGAAATTACAATACAATGTTGTGATAAAGTATTAGAAACTTTAATAATAGAAAAAAATACTTTAAAGATAAGTTCAAATGGAAAAATTATTTCTTTAATTCCTCATTATTCTTATTCTATTGATGTAAAATATTAAAAAAATTTTTTGTCGACCTTTCATAGTGTAAAATTTATGCTAGGTCGACAAGAGTATAAAAGCATAATATTATGCTTTTTTCTATAATTGAAGTTGTATTTGAGGCATTATTTTGATATAATTTTACTTAGATAGACAATAAGGCTATTATAAATATTTCAAAATATTAGAGTAATAGTAATACTA # Right flank : ATTGAAAATTTTAAAAGAAATAAGGTCTTCTTCAATTAGACTAAATCCCATTTTAATTGTGTTATTCAGATATTTTACTTAGCATTTTTTCGCTATTTTAGCACTTGTTTTTTTATTTTCTAAACTTATAAATCTTCATGCTTTTTTCTTGTATTAAGAATAATGAGAGAATAAGAAGAATTTATTTAGAAGAAGTTTTTCTGGAATACATTTAAAAAATATATTATAGAAAGGATTAAATGGAAGATTTAAAATTAAAGAATATAGAAATAAAAAAGGAGTTGATGTAATTGAATAAAAAGAAGTTCCTAAGTAATGTAATAAAAAGCTTAAATAAACAACCTGTTTTATTTGTCGGGTCAGGAATTCCAAAAAGATATTTTAACTTAGAAAATTGGGAAGAACTTTTGAAAAAATTCATAGCAGAATTTTCTAAGGATGAATTTAAATATACTAAGTATTTATCAAAAGTAAAAGAGAAAGATTATTATGGAAAACAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTAAATCCAAGTAGATTGGAATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 561-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAH01000091.1 Fusobacterium necrophorum DJ-2 contig0091, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 560 30 100.0 37 .............................. AATCTTGCTATTTTAAAGTTTCCACCCAACACATCTA 493 30 100.0 35 .............................. TTTGGAGATTTTAAAGTATTAGATCGAGAATATAA 428 30 100.0 36 .............................. AAAATCAGAATAATAGCAAAAACAATGTTGATGAAA 362 30 100.0 37 .............................. AATGGAAGGACGATTTTATTAGAGAACATGCAAGGAA 295 30 100.0 35 .............................. GTCAAAAATAAGAAATTCATCAAAAATTCCTGCAA 230 30 100.0 36 .............................. TTGGAACATCTGTATAATATTGATTCACTTTCATAA 164 30 100.0 36 .............................. CTGCTTTTCTGTATTTATAATTTCATTGGAAATTAT 98 30 100.0 36 .............................. TAAATAATACTTCAATATTAAGTTTCTTGCATATTT 32 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 CTTATAATAGAAACAGATTGAAATGTAAAT # Left flank : AGTTTCTTGCATATT # Right flank : TAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGATTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 9737-15806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAH01000112.1 Fusobacterium necrophorum DJ-2 contig0112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 9737 30 100.0 36 .............................. ATGAGTAAAGAGTATCAAGCAAGGCATATCAAACAA 9803 30 100.0 37 .............................. AAAGGAAATTTTGGAAAGATAGGAGAATTAGAAATAT 9870 30 100.0 35 .............................. CTTGGATATGATGTAGGAGAGGACAGAAAGTATGT 9935 30 100.0 36 .............................. TGAGGCTAAGTATAGACTTGGACAATATCAGAATCC 10001 30 100.0 36 .............................. TTCGTAGAATGTAATGAAAATTATGATATAGATAGC 10067 30 100.0 35 .............................. GTATTATCCGTTAAATATAACATCGAAATGTTATA 10132 30 100.0 37 .............................. TTGGATTAAAAATTGTAGGAATAATTTGAAAAAAAAC 10199 30 100.0 36 .............................. ACTGAAAATATGAGAATAAACTAACTCCAAAAAATC 10265 30 100.0 35 .............................. AATGAATTGAATCATGAGCAAGCAAAAGAGTTAAT 10330 30 100.0 37 .............................. CAGACACAACAGGTTGATAACAAAGTTCTTTTAGCTC 10397 30 100.0 38 .............................. TGAATTTTTTAATTAAAACTGCTATAATTCAAGAAAAG 10465 30 100.0 36 .............................. ATGAAAATTAAATCCATTGTTACATCGGCTTTTCCA 10531 30 100.0 37 .............................. GCTTCACAAACTTTGTTCAGATCTGGCATAAGAGCAA 10598 30 100.0 39 .............................. TTTTTGATTCTTTACGGAATAGTTATAATGGCTTTCAAG 10667 30 100.0 37 .............................. TGACAAAATTGGATCAAGTAATTGTAAATATCTATCA 10734 30 100.0 36 .............................. GATGTTGATTTATCTAACTATTACAATAAAACAGAA 10800 30 100.0 36 .............................. TTTTTACCGCCGACTTTTCATCTTTCTTTAACGTAA 10866 30 100.0 36 .............................. GCTTGCAAATTGAAATAAAAGGCATTTCCGTTTTTT 10932 30 100.0 37 .............................. GCTATCACTGATAAAAAATCGGGCTTCAACTTAGAAA 10999 30 100.0 36 .............................. ACTAATTCCGCAGGATAGGAATTTCCATTTTCCAAT 11065 30 100.0 38 .............................. TTGTCATTGGGTCATCTCCTGCTCCCTCTTCAAATTCT 11133 30 100.0 37 .............................. GTTTTTCGTATTGTTTGTGATTTAATCCTACAACACT 11200 30 100.0 36 .............................. TTCGTACTTTTTCATCAAATGCACCATATCTCGCAA 11266 30 100.0 36 .............................. TAGTTTATTTTCCCCCTTTTTAATCAATCATAATCA 11332 30 100.0 36 .............................. AAGTGGATGTGTCTTATAACTTCTTGGATATCTCAA 11398 30 100.0 37 .............................. AAATGATTGAAACATTGAAACACTGCATTGAGCTTTA 11465 30 100.0 36 .............................. AAGTCTGCTGGAGATGAAGGAAGCCCTATCAGTTTA 11531 30 100.0 37 .............................. TTTTGGAGAAAGAGGAAAAAGAGCGATGAATTTGCTG 11598 30 100.0 35 .............................. GAAGGATGGCTTATTTGCAATATAGAAGCATATTT 11663 30 100.0 36 .............................. TAAATGGCGGAAGTAACAAGAATCGAACTTGTAAAG 11729 30 100.0 38 .............................. GAAAATTTATCTAAAAAAATAATTTCAATATTTTATTC 11797 30 100.0 37 .............................. AGAGAAGATATCAGAGCTTGGTTTGTGTCTACTGTGT 11864 30 100.0 36 .............................. GAATCATTTACTTCAGGGGGGTCACAGGGGGCATAT 11930 30 100.0 35 .............................. AGTCTCACTCTGTGAAAGACAAGCTATTAAACTTG 11995 30 100.0 35 .............................. ACCTTTTTAGATGAAGTAGAATCTAAAACTCGATA 12060 30 100.0 35 .............................. TTTACAATAGTAAAGCTTGCATTTTTATTTTTTTT 12125 30 100.0 37 .............................. AAAAATTAAAACAAAGAGAAGAAAATATGAGATAGAT 12192 30 100.0 37 .............................. CTACCTTAAAATGAAGGAGTTATAAATTCAGGTGTTG 12259 30 100.0 36 .............................. AAAGAATCGCTAGAAATAGCGAAATATGTGTACGAA 12325 30 100.0 36 .............................. ATTTCCATAGGTTTTACCGTAGAACAAGACGGTAAA 12391 30 100.0 36 .............................. TTTATGATTGAAAACCATTGTCCTCATTGTGGCTGG 12457 30 100.0 38 .............................. GGAGTATTCTTCCTTTGTTGCAGGATTTTCCGCGATAA 12525 30 100.0 38 .............................. CAAGGGGCAATCACATTGGAAGATATAGAACTTTTTAC 12593 30 100.0 37 .............................. AAATCACTTTTACAACTCGACCGTTTATTTTGACGTT 12660 30 100.0 36 .............................. TCGCTTGGTCTTGTCGAATCGCCATCGTGAATTGGC 12726 30 100.0 36 .............................. TAAACAACAATCGGTCAAGAAATACACAAGACATGA 12792 30 100.0 37 .............................. CGGAGAACATGGATTGGAAATTAAGAATTTACCATTC 12859 30 100.0 35 .............................. ATTTGTTAGAAATGCAGAAGCTACATTTGTTTTCG 12924 30 100.0 37 .............................. TGATAGACGGATACAATGAAGTAACTTCCACATCTGT 12991 30 100.0 37 .............................. TATGAACCCTATTAAAGTTGCATTGCACCCTAAATCG 13058 30 100.0 38 .............................. TTCACTTCATAAGCTTTCATCTCATCTGTTAAGCCTGT 13126 30 100.0 35 .............................. ATGTTCCAAGCAAGTCATTTCGTCTTCTTTTGAGA 13191 30 100.0 37 .............................. ATCAAATATGTATCTATCCCTAAAATAGATGGAAACA 13258 30 100.0 38 .............................. TTCGTAATGATAATCAATCCAATCATGACTTCCAGCTC 13326 30 100.0 36 .............................. CTAAAATTAAAGGAAGAAAACAATATATAAAATTCT 13392 30 100.0 37 .............................. AATAAATATTATATAATGCTATCGTGGAAGAAGCAGG 13459 30 100.0 37 .............................. TTCTTTCTCCATCCGCTAAAATTATCACCTTATCAAA 13526 30 100.0 37 .............................. AAATTTTTGTTAAATGCATTATTTTTTGAAAAACGGT 13593 30 100.0 37 .............................. AAAGATACAGAGAAAACAATTAAACGATTTTTTATAG 13660 30 100.0 37 .............................. GTTGCTGAATCAATAGATTTTAAAAGTTTTAAAATTT 13727 30 100.0 36 .............................. CCTTGTCCGTGAATTGCTAAATGCTTTGCGGTTTCT 13793 30 100.0 36 .............................. GAACAAGAATGTTTAAGTTAAATTTAACAGAATATG 13859 30 100.0 36 .............................. TTATATTCTAAAGAAAGTATAGAAGGAGGAGTAGAA 13925 30 100.0 36 .............................. AATAAAAAATAAAAAGAAGAGAAGTGACACATGTGT 13991 30 100.0 36 .............................. TTTAAAATATTATCTTGGCTAAAATTTGAAAAAAAA 14057 30 100.0 36 .............................. ACTATTTTGGTGCTAGATGAATGCTGGATGTTCTTC 14123 30 100.0 38 .............................. TCTTTGAGAGCAGATTTTTTAATATAAAAATCATTATA 14191 30 100.0 37 .............................. TAGAAGTTGATTGGCGGATCAACTATCTTATCCCTGT 14258 30 100.0 38 .............................. GAAATGAGAACCGTGTTAGCTACAAACGGAATATATGA 14326 30 100.0 35 .............................. AAAAAAGAAACAGGGATCTTGATATTGTTTTCTAG 14391 30 100.0 36 .............................. ACCAATCCGCTATCTGTTATATAGTTATCTATTAAG 14457 30 100.0 38 .............................. ATGGTTGAAATTAGAAAAGGGACTGTTTTTGAGTATCA 14525 30 100.0 35 .............................. AGAACGGTATCTTTTACTGAAATCACCCTTTCATG 14590 30 100.0 36 .............................. TCGAAATACATAGCACAGTCGTACGGGATTGCGTCT 14656 30 100.0 34 .............................. TTGTACTAAGTTAGTGGCGGTTCTACTCTTTCCG 14720 30 100.0 36 .............................. GGGAAGAATGGCGGATGGAAGTATTCAAGACCCATG 14786 30 100.0 37 .............................. TGATGAGCGATCTCAATTTTTCCGTCGTTGCAAACAA 14853 30 100.0 34 .............................. TTGTACTAAGTTAGTGGCGGTTCTACTCTTTCCG 14917 30 100.0 36 .............................. TCGCCCAAGCGGCTAAATCCTCCGCTTTTCTTAGAA 14983 30 100.0 36 .............................. CTCGAAAAAAAAGGTAATCCATCTTGGTCTTGTGCT 15049 30 100.0 36 .............................. ATGTTGGAACTGTAAATATATTAAATACCATTCCTA 15115 30 100.0 35 .............................. GCAACAATTCCAGCCCCTCGTTCAACTGCTGGAAT 15180 30 100.0 35 .............................. CTTATTGTTGCCTCTGCTTTGATTGCTTCTTGCAT 15245 30 100.0 36 .............................. GAATTATTGAAATGTAGTCAAGAAAGCCTATTAGGT 15311 30 100.0 36 .............................. CTTTAAATATATTTTTGTTGTCCCCACACGCTTTTT 15377 30 100.0 37 .............................. ATTATAAAAATAGGTCAACTCTTAGAAATAGAAAGCA 15444 30 100.0 36 .............................. CTTTGATATTTCTATCTTGGAGAAGTAGTCTTATTT 15510 30 100.0 38 .............................. TGGTCGGAACTCCCCTTTCGCAGATGCTTTGTAAAGTG 15578 30 100.0 35 .............................. CATCGTCACACGATACGTCATACGAGTCGTCAGAC 15643 30 100.0 37 .............................. ACGTTTCCGCTTCCTTACTTAACACCAAATGAAAATC 15710 30 100.0 37 .............................. GACACTCTGATGTCTTTCAACCACGGTGGCTAAGTTT 15777 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 92 30 100.0 36 ATTAGAGTATTACTAGAGTAGAATGTAAAT # Left flank : TTCCAAATGTGGTGGTGATAAAATATGTATGTAGTAGTTGTATATGATATCTCTTTAGATGAGAAAGGGACTTATCATTGGAAAAAAATTTTTCAAATTTGCAAACGATATTTGCATCATATTCAAAACTCTGTGTTTGAAGGAGAACTATCGGAAGTGGATATTGAGAGATTAAAATATGAAGTATCTAATTATATTAGAGATAATCTAGATTCTTTTATTATTTTTAAATCTCGGAATGAGAGATGGATGGAAAAAGAAATGTTAGGAATACAAGAAGACAAAACAGATAATTTTCTGTAGATATTTTCATTGTCGACCTCTCATAAGGTAAAAATCTCAGGACATTGACAAAAGAATAAAAGAACTTGATTTTCCAAGAAAAAAAGTAAAGATAGAAAAATAAAAAAGGGTTTTCTCTTAATTTTTTTTATAAAATAACTTTATCGACAATTATAGTCAAAAAAAGTTATAGATAGCAATGTATTTTAAAGTCTCGT # Right flank : TTTTTACAGGTGGTCTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 772-2798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAH01000010.1 Fusobacterium necrophorum DJ-2 contig0010, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 772 30 100.0 37 .............................. TCTTCTAATTGTAGTAATGTATTGTTCATTCTATTAT 839 30 100.0 36 .............................. ACAATTAGTTCAATACTATAAATTGTTGTGAAAGTC 905 30 100.0 37 .............................. CATAATAAATACTCGTTCTATTTCACTTGACCAGGTT 972 30 100.0 37 .............................. GCCCATACTGCGTTCAGTGGAATCAAATGCGAGAAGA 1039 30 100.0 37 .............................. ACTTCTATATCCCTAGTAATTACGTACATCCACAAAA 1106 30 100.0 36 .............................. AAAGAAATAACTTTTGATTTTTCTTTTGCTTTCCAT 1172 30 100.0 37 .............................. GTGCCTATATTTGATGTCGATAAAAAAGCAGAGGAGC 1239 30 100.0 36 .............................. TTTTTTGCGTCAAAAGCTACGTATTTTTGAGGTACT 1305 30 100.0 38 .............................. ATTTGAAAGATACACTGTAACTATCAACAAATAGAGGT 1373 30 100.0 37 .............................. ATACGACTATGCTAGATACTACCAAGACTAACCTGGA 1440 30 100.0 37 .............................. TGGAGTCCGGAGCAAGTCTTTGATGATGGAGAGAAAA 1507 30 100.0 36 .............................. AATAGGACACTCTTCTTTTAACTTTCCATTCTCATA 1573 30 100.0 38 .............................. TGAATGGAAACTTTGACAGACTTCGGAAAATTCCAACA 1641 30 100.0 36 .............................. TCTTGCTGGAAATTTATGTATCCATTTTCCTTCCCC 1707 30 100.0 36 .............................. CCAATTGATAAAAATACAGATGAACGATTTGTGAAT 1773 30 100.0 36 .............................. TTGAGAAGAAAAACCATTGGCAACATATTTTTTTAC 1839 30 100.0 36 .............................. TACTTCCAGCTATGATATACCAGCCTTTTTTTGCGT 1905 30 100.0 36 .............................. TTTTTCTTTGTTGTAATAAATCTTTCATATTTTGCA 1971 30 100.0 38 .............................. TTGCAGAATCATAAGTTCCTATAACTTTTGTTCCTTGC 2039 30 100.0 35 .............................. CTATCATCATTGAAACAGGAACTCGGTTTAATATT 2104 30 100.0 35 .............................. GTTAAAAAATAAGTGTTTTTATCACTGATTCGAGG 2169 30 100.0 38 .............................. TGAACTTTATAAGAACCAGGATATTCTTGAAGATTTTT 2237 30 100.0 36 .............................. AAATTAGGAGGTATTTTATGAAGTTATCAAAATTAA 2303 30 100.0 36 .............................. ATTCAAGTTTTGTAATGAAGTAACTTTAGCGGGATT 2369 30 100.0 37 .............................. TTTAGTGAAAGTTTATATTTATTATCAAAAGAAGAAA 2436 30 100.0 36 .............................. TTAGGAATAAGTAAATATCTTCCAGTAACTGTATCA 2502 30 100.0 36 .............................. CATGTATTCAGTTGTTTCAGTTTTATGCAGTTGCTG 2568 30 100.0 36 .............................. ACGGCAAAAAACAGTTTAACAGCGAATAATAATGCA 2634 30 100.0 37 .............................. GTTTGTCCTCCTTTCCAAGCTCCTTTGACTACCTCTT 2701 30 100.0 38 .............................. AGAGGAACTGTATTACAGCCAATTGAGGTTGGAGGATC 2769 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 31 30 100.0 37 CTTATAATAGAAACAGAGTGAAATGTAAAT # Left flank : CAAGTGCAATTGATTTTACATATCAGACCGGAAACGGTAGGGGAGAAGAAAGTATTTCAAAAGAGGAAAAAATTCGTCAGCATGAAGAGTTGATGAAATATACTTTGACTGTAGAGTCTTACCTTACTTAAAGGAGTGAAAATAGAGAAAAAGATAACAATAAATTCTTATCAAAAAATAAAGGAGTTTCATTTGTAATAGGCTTTGTATGCATCTAGAAATGTTTTAAGTTATCACCAAAAGAAAAACATTAAAAACATTTTTAAGAGTTAAGGATAAAAAAGTATATTGAAATGAAATAATATGAGGGTATTTTTTTGCTTGTCGACCCCCAATAATGTAAATTTCCTAAGAGGTCGACAAACTACTTCTAATAAAGGACTAGAGATGATTTTTGACATTTTTTATTTGTTGAAATCAATAAAAAATGATACAATTACAAGAGGTCGACAAATTTGGGAGTGAAAATCAGCTAAAATAAAAGACTTTATCTTATGCGG # Right flank : TTAGTAATCACAACATCAATCGTTCTTGCGATTAAAGCTTATAATAGAAACAGAGTGGTCTTGTGGTTTGATAGGGATACTTATAAGGTTTTTAATTTTTCAAAGGTTTTTATGATGAATGATATTACATTTAGGATACAATATAGTCTATGAAATGAACTATTTGGAACTTTGAATAAGAGAATAAAGAAATGGATAAAAAAGATGAAATGATGATTGTAAGTCAGGAATCCCTTGAGAAAAAGATTTATATTATTAGGGGACAAAAGGTCATGCTTGACTTTGAATTAGCCGAAATCTATGGATATGAAACAAAGGCTTTTAATCAGCAAGTAAAAAGGAATATTGAAAAATTTGATGAAGATTTTATGTTCCGATTAACTGACGAGGAAGTCTCTAAACTTTCAAGGTCACAAAATGTGACCTTGAACAAGAGTGCAGGAAGAGGTAGTAATATTAAGTACAATCCTCATGCTTTTACCGATCAGGGAATCTATATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGAGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //