Array 1 870159-870613 **** Predicted by CRISPRDetect 2.4 *** >NC_013721.1 Gardnerella vaginalis 409-05, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 870159 28 100.0 33 ............................ TAAAAGTATGATGCATTGAAGTAACATCTAGTG 870220 28 100.0 33 ............................ CAAACGTGTCCATGCTTACGCCGCAAGTTTTAA 870281 28 100.0 33 ............................ GGTGACAGGATTGTTTTTACTGACGGTCAAGGC 870342 28 100.0 33 ............................ CGGCTCAGCCGTTAAAACTAGATCACACTTGTA 870403 28 100.0 33 ............................ CGACCTTCAGCAGTTGCCGCAGTTCCACGCAAA 870464 28 100.0 33 ............................ TACTTTTGGCTGGCTTGTCAACAGGAACATGGG 870525 28 100.0 33 ............................ CAAGCTCACTAATAATGGCGAAACGCAGGGTAT 870586 28 82.1 0 .....................C.CTG.G | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.8 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : ATAATTTTATTCCTAATGAAATTATTGAGTTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCAGATTAGATTTAGCATTAAAAGAATTTATTAATTTTGTCGAAAGATTACCTGTACTTGGATATAACGTACAATTTGATATGTCATTTTTAAATTCTGCTTTATCTTCATTAGATGAAAGATTTGATCATTCTCTTTCAATTAACAAAATTTTTGATATTTCTCGTTTTGTAAAGAAAGAAAAGAAATTTTTAAAAAACTACCAATTAAAAACAGTGCTGCACGAATACAACATTGCTGAATCTGTTCCACATAGAGCTCTTCTGGATGCTAGACTAACAGCGCATCTTGTTTTTAATTTGACAGAATTGTTAAAATTTCTTGCATAATAGTAGAATTGAAAGTGATGCGCAATAATGATAGCTTTGAAAAGTAAATAATTTTTGCTGTTTAATCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : GACCTGCCTGAGCGCTTAAAGCGTAGCGCGCGAAGGCAGGTCGTCGCACTGCGCTAGTAACGATAAATCGCAATTATTCGTTATTAACGCAGATTAGCTACTGCACCAGTAACATATGACCGTTATTTTCTCAGTCAAGTATCTGAGAAAGTAACGCTAATAAGCAAAACACTGTTAAAAACTCAGTCAAGTATCTGAGAAAGTAACGCAAATAAGCAAAACATCGTTAAAAACTCAGCTAACCAACTGAGAAAGTAACACTTGCGCTCGCAAATGCTCCAATCCATACGCATAACAAACATCCAACCAACACACGCAAACACCACCAAACGACACGCCAAATAGGCGAGGGCTTGCATTTGAGAATATTTCGGGTATAGTAGTTACTCGTGCTTCGGCGCTGACATTGTTCAGTAAAGTTGCATTGCGGACATAGCTTAGTTGGTAAAGCGCAACCTTGCCAAGGTTGAGACCGCGGGTTCGAGTCCCGTTGTCCGCTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //