Array 1 210375-209431 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLVD01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07314 WH_SGI_V_07314_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 210374 29 96.6 32 ...........G................. ACCTAGTGATCCTCGATTGCGGTCGATGGGAG 210313 29 96.6 32 ...........G................. GTTGCAGCATCGCCGGCGTGGCGGGCCTGAGC 210252 29 96.6 32 ...........G................. GTCAACCTCGTTCCGTACCGCGTCACGCTGAC 210191 29 96.6 32 ...........G................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 210130 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 210069 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 210008 29 100.0 32 ............................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 209947 29 100.0 32 ............................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 209886 29 96.6 32 ..........................T.. GTGGTGCCGTGTGAGCCGGGCTTGGGGTCATG 209825 29 100.0 32 ............................. GTGATCCGCTGATAGTCGCCGTGCCCCAGGCC 209764 29 100.0 32 ............................. CTGCTGCGCGTAGGTTGGTGGCTCGCTATGTT 209703 29 96.6 32 .....................T....... GGCCTATTCCGGCCAGTCATCTCAGCTTGAAC 209642 29 100.0 32 ............................. GTCACCGGGCAGAGCAACACTGCTGTTGGCAA 209581 29 100.0 32 ............................. TCGCCGGTGCGGCCGTGGGGCTACGAGCGGCC 209520 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 209459 29 96.6 0 ........T.................... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 220861-219549 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLVD01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07314 WH_SGI_V_07314_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 220860 29 100.0 32 ............................. AAGACTTTCGTTTTCAATCCGGGCATTAGATA 220799 29 100.0 32 ............................. CTATGTCCTTCAAGCTGATTTCCATTTCACTA 220738 29 100.0 32 ............................. GCCCGCGTGCGCATGGTTCGACGTCACCACGG 220677 29 100.0 32 ............................. TAAGGCCGCTCATCATGCCAGCAGCAAGCGCG 220616 29 100.0 32 ............................. GTACAGGTACTGCTCATCCGCGGCGTACAGCC 220555 29 100.0 32 ............................. CCGAGTCCACCGGACTGACGCTGCACACGAAG 220494 29 100.0 32 ............................. GCGATGAACCCCGCTCACATCTTGTTCGAGTG 220433 29 100.0 32 ............................. ATGGGCGTGCGCAGCGTGCGCGGGCTCGTCCT 220372 29 100.0 33 ............................. TTCATCTTTGCAAACCACCCGACTAGACCCCGA 220310 29 100.0 32 ............................. GTAGCCGACCAGATCCTGCCGCAGTACTGGCA 220249 29 100.0 32 ............................. TACGGGAATGATGTCTGGTGCCACCTGCCAGA 220188 29 100.0 32 ............................. CAGTTCTCTGTCGTTCATTGCTTGGCTCCTTC 220127 29 100.0 32 ............................. CATGGCAAGGGCCGCTGATTTCCGATGAGGAA 220066 29 100.0 32 ............................. CCCTTCGCTGACCGTCATACCGTTGAGGCGCG 220005 29 100.0 32 ............................. GATTATGCCGTGGCTCGGGGCGTGGAAGCCGG 219944 29 100.0 33 ............................. ACAAGTTGCCGCTGTCGAAGGTGACGACGACCG 219882 29 100.0 32 ............................. GCCTCCATCTTGCGGGCCAGCGGGGGCAGGGT 219821 29 100.0 32 ............................. TAGGTGTGCTGGGCGTAGTCGGTGGAGTTCTG 219760 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 219699 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 219638 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 219577 28 79.3 0 A..........A..C.....-..A....T | C [219568] ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21008-21695 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLVD01000010.1 Pseudomonas aeruginosa strain WH-SGI-V-07314 WH_SGI_V_07314_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21008 28 100.0 32 ............................ TGGCGCATACCCGCGGATGTCATGAAGATGGA 21068 28 100.0 32 ............................ ACAACGGCGAGGCGCCAACAAGGATCGAATCC 21128 28 100.0 32 ............................ TGGCAACCACTCCGACCGTGCACTTCGTATCG 21188 28 100.0 32 ............................ TGCGCGACGCAGCCGACCAGCTCGCCGCCCGA 21248 28 100.0 32 ............................ ATCCTCGAACAGCCCGGGTTCGGTCGTCTCCA 21308 28 100.0 32 ............................ AGGAGTTTGCGGCCCCGCTCCCTGCGGCTCTC 21368 28 100.0 32 ............................ TTCACGGCGGGCTTGATGTCCGCGTCTACCTG 21428 28 100.0 32 ............................ TTGCCGAGTACGATGCCTGATACATGAATCCA 21488 28 100.0 32 ............................ TGGCTGTGGTGCCGGCAGTCCGGGGAGGCGTG 21548 28 100.0 32 ............................ TGGCCGCAGGCGAGCAGGTCAGCCGGGGCCAT 21608 28 100.0 32 ............................ CCCAGACTCTCAATCATCACGTCATTGCGCGC 21668 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCAAAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31567-30219 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLVD01000010.1 Pseudomonas aeruginosa strain WH-SGI-V-07314 WH_SGI_V_07314_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31566 28 100.0 32 ............................ TGGCCGGTGATGCCCTGATGCTCGGCCGCCGC 31506 28 100.0 32 ............................ AACCAGCACGACAAGACCGTCGAGAAGTATGT 31446 28 100.0 32 ............................ ACCAAGGCCTAGCCACGACCATTTCCCATCAG 31386 28 100.0 32 ............................ TCCCCGGCAATAGCTGGGGCGGAGAGGTATTG 31326 28 100.0 32 ............................ TGGCAGGACATGCGCCTTGGCAGTGTGCCCGT 31266 28 100.0 32 ............................ AAGCCGACGAGTACGCAAAGACCGGCCAGGTG 31206 28 100.0 32 ............................ AAGGGATCAGCGTGTAGTCGTCGGGGAACCCC 31146 28 100.0 32 ............................ TCGGGAGGCCGGCACCGGATGCAGTTGCATTG 31086 28 100.0 32 ............................ AACTCCATCTTCGAAGCGTTGCGGCGCACTAG 31026 28 100.0 32 ............................ TTGATGGACATGGTGAGACGAGCGGACTTGTT 30966 28 100.0 32 ............................ ATGAAACAGATGCGCGCTACATCGGTCGGCTC 30906 28 100.0 32 ............................ ACCACCCGTTCCAGGCGTGCCGCCACCATCAC 30846 28 100.0 32 ............................ GGGCAATGAGCGACTTCTTCCGTACAGCCTCC 30786 28 100.0 32 ............................ TTCCCCGGATTGAGCCGAAACATGATGCTCCC 30726 28 100.0 32 ............................ AGCAAGCACGCACCGGACGCCGCCCTGTGGGC 30666 28 100.0 32 ............................ ACAGATACCGGGCCGTCCGCGCTTGAGCCGCG 30606 28 100.0 32 ............................ ATCGTCATCCGCGGCAAGGCCAGCAGCATGCG 30546 28 100.0 32 ............................ TCATCTCAACTGCGCCAGCTCGCGCGACAACT 30486 28 100.0 32 ............................ TGCGCCGGAAAGTTCGACAACATCCTGAATTT 30426 28 100.0 32 ............................ TTGTTGGTGCGCACCGACTCCAGCAGCTTGTC 30366 28 100.0 32 ............................ ATCCGCGCCGAGGGCTGGGCATGGGTGGACGC 30306 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 30246 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGATGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //