Array 1 12171-11999 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBPM01000028.1 Helicobacter pylori strain 38:5 NODE_34_length_12305_cov_43.2977_ID_67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 12170 29 96.6 43 .......A..................... TTGCCAATCCCCACTGCTTTCGCTTTTTAATCTTTGAGTTTTA 12098 29 100.0 42 ............................. GAACTCTTTCTTTTTTAAGGGATTTCTTTTTTTAAACCCTCT 12027 29 93.1 0 .......G....T................ | ========== ====== ====== ====== ============================= =========================================== ================== 3 29 96.6 43 TTTTTTTTGGGGGTTTGATCTTTTTCTTT # Left flank : TTTTAGGGGTTTCTTTTTTGAACCCTCTTTTTTTGAACCCTTTCTTTTAAATTCTTTGTTTTTGAACTCTTTGTTTTTTTGGGGGATTTTAATGAAAAATCTTTTTTCTTTTAAACCCTCTCTCTTAAATTCTC # Right flank : TTGCTGATTTTTTAATTTTTTAATTTTTTAATCTTTTTACAAAACAAAGTTTTTATTTTCAAACGCTAATCATAAAAAACACTCAAAGGTGTTTTTTATAACCAACAATCAAAGAGCTTGCCAAAAGCAAGCGATAGTTTTAAAAAGGAAAAATCCTTTTTAGCGTTTTTGGTATTAGTTAGTGAAACACTTGACGCTAAGTTAAGCGATAATCTCTTAAAAAAGCGCTCTTTAGGGGGTTTTTAGTCTAGGGTTGTAGAGGGGGGATTTTTCAAAATTCCCCCTACCCCCTTAAAAAAATGAATTTAAAAATCAAACTTAAAAAATGAGTTTTATCATAAGAATAAAACCTTAAAACGATAAAATCAAGCCATTAAAATCCCCTCTTTTTAAAAAAATAAATCATAACCCCCTAGACTTTAAACTTAAAGCTCACTAGCCTTATAAGATTAGTGAGAATATCCGCATGACAAATCCTTTCAAAAATGATATAATAGACT # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTTTTGGGGGTTTGATCTTTTTCTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 29808-30003 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBPM01000046.1 Helicobacter pylori strain 38:5 NODE_15_length_45693_cov_43.7428_ID_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================== ================== 29808 25 100.0 35 ......................... GTAACAGCACAAGTTCAAGCTTTGATAATAGTAGT 29868 25 92.0 32 ...........G.....C....... ATAGTGCTCAATCTGCTTTTAATGACAGTGCT 29925 25 100.0 29 ......................... ATGACAATACTAGCTTTAATAACGATACC 29979 25 92.0 0 ..................C.C.... | ========== ====== ====== ====== ========================= =================================== ================== 4 25 96.0 32 TTCAATCAAGGCACTTATAATTTTA # Left flank : ATATTGAAAGCGGTCCTAATTCACCCACGCACAACTCTTATTGCCTTTTTAGTAGCGCTCAAGGCTCTGGGACTTATTATTTGAACACCCTTACCACTTATAGCGCTGGTGGGGCTAGTTTCACGCAAAAATTCAATGGCGGCACGCTTAATGTGGGAGGGAATATCCGCTTTGGAGGCACAGGTATTAATGGAGGTGATGTAGGCTATATCACAGGCACTTATGACGCTCAAACGATTAATTTTAATTCTAGCCATTTAACAACCGGAAACTCATACGCTGATGGTGGTGGGGCCACGCTCAATTTTAATGCAACTAATCATATCACTATCAATCAAGCGAGTTTTGATAACAGCGATGCAGGGACGCAACACTCTTACATGAATTTTAAAGGCTCTAATATCAAGGTCAGTGGCTCTAGCTTTAAAGACGACACGAATGGGGGCTTTAGTTTCAGCGGTAGTAATAATAATAGCGTTATCTCTTTCAATCAAACTAAC # Right flank : AATACCAGCAAGGTGAGTTTCTCAGGCATCAACACTTTGAATTCAAGTTCGCCTTTTGCCAACCTTAAAGGCAGTGTGTCTTTTAATTCTAATGCGGTTTTTAACCTCAATCAAACCCTTAATAATAATCAAACCTATGATATTCTCACTACAAACGGGGCGATCCAGTATGGGGTTTATCAAAGCTATTTGTGGGATCTAATCAACTATAAGGGCGATAAAGCCATTAGCCATGTTGGAGTGGGTAATAACACTTATGATGTAACCTTTGACATTAACGGGCAAGATGAAACCTTACAAGAAACCTTTAACAACCAATCCATCATTACCCAATTTTTAGGAGACGATTTACAACAACAAGCCCAACAAACCTATCAAGAGGATGTAGCTCATTCCCAAAACGCTTTGAATAATGTTACTAGCGACAACACGATCGCAAATAACGATACAAGCTACACTCAAAGCAAAAATACTACTATCGCTACAGACGCTCAGAATTT # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAATCAAGGCACTTATAATTTTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //