Array 1 38534-41122 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGB01000007.1 Lactobacillus helveticus strain IMAU50013 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 38534 32 90.6 1 .............................TGA A Deletion [38567] 38567 32 100.0 34 ................................ TTTGGAAGCCTTCCAGTTAGATTAGAGCCAACAT 38633 32 100.0 35 ................................ AGCAGCAGACTACATGGAAGACTAAAGTTTGATGC 38700 32 100.0 34 ................................ ATTTTGCAGCCCTCCTTCAATACCATTTTACTAC 38766 32 100.0 34 ................................ GTTTCATTGATATAAATATCAACGGTACCATTAT 38832 32 100.0 34 ................................ TCCTCGCAACCGTGCCATGATCCTTTCTCAGCGG 38898 32 100.0 34 ................................ ATGATGGGCTACCAGTATCCAACACATTGTCTAA 38964 32 100.0 35 ................................ GTAAGTGTTTAGTAGCACAAAAGAATTTTGCAGAA 39031 32 100.0 33 ................................ AATCGAAAGCTCAATATATCCCTGTGAAATAAC 39096 32 100.0 35 ................................ AACCATTTAAACAAGAACAATCCGCAAGTACACGC 39163 32 100.0 34 ................................ CTATTGCGTTGTTCATCGCAATAAGATGTAGGGT 39229 32 100.0 34 ................................ TTTGACCGACTGCATACGCATCGGCTGCCGAATC 39295 32 100.0 34 ................................ AAAAGGTGAACCACATCAAGAATCCAAACAAGAT 39361 32 100.0 34 ................................ ATAAAGGTCTTTAAGACCAGTACCATTAGCAAAG 39427 32 100.0 34 ................................ TTGGTTACGACTCTGACAAAAGCAAGAAATCAGA 39493 32 100.0 35 ................................ TATTGAAAGTCTGACTAAGCAGCAACAAATTCAAG 39560 32 100.0 34 ................................ TAAATCAGAAGCTAAGCCAGGTGATCCTGTCTTT 39626 32 100.0 35 ................................ TTTTTCATATTTCTCAACGAGTTTTTTACGAATGT 39693 32 100.0 36 ................................ TTACAGATTCCTGCTTCGACTGAAAGTGTTGCTTTC 39761 32 100.0 34 ................................ TTAACGGAAGTATGGGGCTTTCCAAACATGCCAC 39827 32 100.0 34 ................................ GATTTGGTAGAAGGGCAAAATTACACAATTGGTA 39893 32 100.0 34 ................................ TTTTTTTACCTCCCTTAATCCTTACAATTTTTAT 39959 32 100.0 35 ................................ AATTATTGTCTAATAGTTTTTTACGATAATTGACC 40026 32 100.0 34 ................................ AAGTAATACCGCACTTACTTGGGCTGATCTTGGA 40092 32 100.0 34 ................................ AAGTAATACCGCACTTACTTGGGCTGATCTTGGA 40158 32 100.0 34 ................................ AATATCTTCTAAGCTAGTATAAAACTCGTCATTT 40224 32 100.0 34 ................................ ACCCTGGAAAATACGCTTGCTATAACAGATATAC 40290 32 100.0 35 ................................ TCCCATGTTTTAGGTTTGAAAGTCTCATCTAAGTC 40357 32 100.0 35 ................................ AGACTACTTTGCAAGCGATCAGTTTAGCTTTTAGC 40424 32 100.0 35 ................................ AGACTACTTTGCAAGCGATCAGTTTAGCTTTTAGC 40491 32 100.0 34 ................................ CTAAGTAAGATGAATCAAATTGGTAAAGAACTTG 40557 32 100.0 34 ................................ ATATAGCACATTAAGGCATGACCGAGTTAATATC 40623 32 100.0 34 ................................ ATATAGCACATTAAGGCATGACCGAGTTAATATC 40689 32 100.0 36 ................................ GCCTTCCTTGACCACATGTGCTTGACAGCCGGTATA 40757 32 100.0 35 ................................ CAAAAGAACCAGTTCACGTGCCAACAGGTAAGTAA 40824 32 100.0 35 ................................ ACTGCTAAGGGCAAACCATTGGACTTGCTTAAACA 40891 32 100.0 35 ................................ ACTGCTAAGGGCAAACCATTGGACTTGCTTAAACA 40958 32 100.0 35 ................................ ATCAAGCTTGCCAACGGGTCGATTTTATTCTGTGA 41025 32 100.0 34 ................................ TTTTGAATAGATGGCATGTAAGTCTGATATAGTT 41091 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 40 32 99.8 34 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : TTTTAGGTCCATTGCACTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAAT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 542-330 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGB01000082.1 Lactobacillus helveticus strain IMAU50013 Scaffold82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 541 29 100.0 32 ............................. TGGACTTCAAATTATTATCAATCAGACTCTGG 480 29 100.0 32 ............................. AACTCCGGAGCCAGAACTTCTAACCCAACTAC 419 29 100.0 32 ............................. TGCTCTAAATTATCGTGATATTCTTGAACATC 358 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTAATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGTATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGCGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : TCAGGTGTATAAGGCATTTAAGTATCTATAGTCTAATTATTTTAGAGCATAAAAAAAGACCCGCCAAAAAATAGCGAGTCCGTGTAAGGAGAATAAGAATGAAGGAGAGGTAAATCAGCCCTCGTTTCTTAGTTTATATTAGGAGTGTTAAAATGGCAAGAACTGAACCAGAAAAAAAAGCTCAAAAAAAATATTATTTGAAAAACAAAAATATGTACAAGATTAACTCCTATCGCTCAAGAGCTAAGAATTTCATTTTAAAGTATGCAACCACTGATGAGCTCATATGGCTTAGAGGCTTGATTGATGAAAGATTATCTAAAAAAAAAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //