Array 1 1560209-1559937 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018194.1 Granulibacter bethesdensis strain NIH8.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1560208 28 100.0 33 ............................ GTGTGCCAGAAAATGTGCCACTCTGGTCCCGGC 1560147 28 100.0 33 ............................ CGAGACGCCGATCACGCCGCGAGAGGTAGTCCA 1560086 28 100.0 33 ............................ CTGGCCCAGCACGTACACGTCAGAAAATGCGTT 1560025 28 100.0 33 ............................ ACAGTGGACGAAAGTATCTTTATGTATCATCCG 1559964 28 89.3 0 ...........A...A...........T | ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.9 33 GGTTCCCCCGCGTGCGCGGGGATAGTCC # Left flank : GGTACCCCGGCTTCCTTACGGGAAACACCAAGGCGATCCTTCCAAACAAAGGTCGGCGTTCCACGCATCTGGATCGCGTGGGCAGCAGCCAGGTTTAAGGTCAGCGCGGCTTGTGCCGTGTCGTTTGGTGTATGGTCAGGTTCGGCATGCCCGAGATTGCTGATCCGCCGCCAGGTATCGCCCATCTCGGCCGCTGAGGCTGAAAGCAGTTCCAAGGCTGCAAGCGTAGATGCTCCGCCATTTTCATGATCATTGATCGAAATCGGCACCAGGGCGAGCTGAATACGCCCCTCTTCTATGGCAGCCCGCAAGGTGCTGAAGGCGCGGGTGGAGAAAGGGCATAGTGGATCGATCACCATATAGACACGCGCTGCGCCCTGCCGGCCCACAAGCCCATAATGTGCTGATGCCAAGCGCAGCACCGGATCAACCATACTGACTTGCTCACCGGCCTTCAGGCCGGTGAGCAAGTCAGGATCTGCCCGGGTATCCGAGCAAGA # Right flank : GACGTAGGTGTTCTGAATTCAGAACACCCGGTGCCTGTAGCTTCCCCAGCATATACGTGAAGAGCGTAACCTCCCCCCTTTTACACGGGGATGGACCGATCTGCCTGCATGGGCTACTTGGCGCGTTCATCCTTTCATCCGGCTGATGCCACTATTGGCTGACGCCCTTCATGATCAGGTTCTCGATCGTCGCATGGCCACCAGCAACGATATCCGCGCCACGTTCCTTAACTACTTCGCCCGTAACGGGCATGAGGTGGTCGACAGCTCTCCGCTCGTGCCGCGTAACGATCCCACCCTGCTGTTCGTCAACAGCGGTATGGTGCAGTTCAAGAACGTGTTCACAGGGCAGGAAAGGCGGCCTTACAGCCGTGCCACGACCTCCCAGAAATGCGTCCGCGCCGGGGGGAAGCATAACGACCTCGATAATGTCGGCTACACCGCCCGGCATCATACCTTCTTTGAAATGCTGGGGAATTTCTCCTTCGGCGATTATTTCA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGTGCGCGGGGATAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 1566109-1565715 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018194.1 Granulibacter bethesdensis strain NIH8.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1566108 28 100.0 33 ............................ CGCGCATTGACCGGCTCACGACAGCCGAGGTCG 1566047 28 100.0 33 ............................ TCGCCGATTTTGTTGCGACGCCTCAGCAGGCGG 1565986 28 100.0 33 ............................ CTAACAATCGCCGCAACAACCTCCGGCATGGTC 1565925 28 100.0 33 ............................ TTTTCGTCACGATGATTTCGCTATCTGTTTCCT 1565864 28 100.0 33 ............................ GCCCGGATTTTGTATCCCGCGTCGCCACATCCT 1565803 28 100.0 33 ............................ CTATAAGGGCCGCAATGACCGCGTTGCGCTCGA 1565742 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GGTTCCCCCGCGTGCGCGGGGATAGTCC # Left flank : TTGATGCCGCAGCATCTCCGCTGGATCGGATAGATGAGGAACTGGTTGAGGTAGCGCGGGGGGTGATGCGGGAGCATTACCGCCCGTTATGGCATACGGTGGCGGCGGCGTTGCGGGATGCAAATGGCCGCATATGGACCGGCCTTCATCTTGGCGCGACGGTAGGACGCCTGCAGATTTGTGCCGAAGCCATCGCATTGGGGCGCGCCAAACTGGAAGGTGGCAGCGAGATCAAAACAGCCGTCGCGGTTCGTCATCCCAAACCGGATGAGATCGATCAGGACATTGACGTTGTCTCTCCCTGCGGCGCGTGTCGAGAGATGTTCGCGGATTTTACCCCTTCCACCATGATTATTGTTTCGGATGGGCAGGGACTGATCAAGGTGCCGCTTTCATTTCTCCTTCCTCTTCCTTACCGACGTTGAAAAAGGCGGCTTGCATTTTCCTCAAAATGTGAACAATTTGGATTGTTCTTTGAAATCAATAACATCAGGTCTAGA # Right flank : TGACCCGTTTTTCAGGCCCGCAAGCTCCGGCGTTGAGGCCGGAGATAGGGCGGTTAGCTGTCTCAATCTGGTGTTCGCTGCTGCTCGATATACTGCCGGATGATAGAAAGCGGCGCGCCACCACAGGACGCTGCAAAATAGCTTGGAGACCAGAGCACGCCACGCCAGTAGCGGCGGACAAGCGCGGGATGCATCTGCCTCAACCTTCGGCTTGAAACACCCTTGAGGCTGTTCACGAGAACAGACAAAGCCACCTTGGGCGGATAGTGCACGAGGAGATGCACGTGATCATCCTCCCCGTCGAATTCCACCAGATGGGTTTCGAAGTCTGTGCAGACCTTCTCGAAGACAGTCTGCATATCTTTCAGGATCGCGGCAGTGAAGACATGGCGGCGATATTTTGTCACGAAGACCAAGTGGACATGAAGCGTAAAAACACAGTGCCTGCCTCGTCTGTAATCATTGTTATTCCCCATAGGCCAATGCTATACTTTCCAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGTGCGCGGGGATAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 1834738-1833673 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018194.1 Granulibacter bethesdensis strain NIH8.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1834737 28 100.0 33 ............................ GTTGCTATAGAGTCAGATTGTAATAGCTTTGCA 1834676 28 100.0 33 ............................ TGACGTATTCACATCTTTTCCGGGCTTCTCATG 1834615 28 96.4 33 .........................G.. CCAGGCACATCAGGAGGCAGCGCGCTTCCCGTG 1834554 28 100.0 33 ............................ CTTGGCGCTGGGGTATCTTAGGCTGGCTAAACG 1834493 28 100.0 33 ............................ CCTCTCGTCGCTATCGCCGTTCGAGCGGCACGT 1834432 28 100.0 33 ............................ CTCGCGGCCGTGCAAAAAAAACATCTGACGGGC 1834371 28 100.0 33 ............................ TTGGCTCGGCTCCAGCATGTTTTCCACAACGCG 1834310 28 100.0 33 ............................ CGCCAGGCGAGCCATCTGGCTGAATGTGAGGCA 1834249 28 100.0 33 ............................ TGTTTTTGGACCTGAGCGGCATGCGTGATCTGG 1834188 28 100.0 33 ............................ CAGCGCCCGGAGCAGGAAGAGCCTGCGCGAACT 1834127 28 100.0 33 ............................ ATAAAGGGGGAGACGACCACTATCAGCCTCCCC 1834066 28 100.0 33 ............................ TCGCCGCAGACTCACTAGAGGAGGCGAACGCGG 1834005 28 100.0 33 ............................ TGCTGTGCCGGTGGTGCGCTGGGCCTGCGCTGC 1833944 28 100.0 33 ............................ CTGCAAAAAAGCCTCGTTCGCTTCCTCTAGTGA 1833883 28 100.0 33 ............................ GGGAGACGCGGGTACGATGCAAGCAATTGTTCT 1833822 28 100.0 33 ............................ CCCCGCCGAGGATCGGCGAGATGCGATAAACAG 1833761 28 100.0 33 ............................ CGACACGTACGTGTCGGCCGGGGCCAGCCGGGA 1833700 28 92.9 0 .........................T.T | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.4 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : CAGACATGGCAGTTGCCGCGTCTGGATTGATATTTGAAGAGGAATCCTTTTTCGGCAAGATTTTCAAAGATATCCGGGAGATAAAAGGTCTTTCTGCACAAAATCGATTTTTGTATCAGGATGATGAAACAGATTATTCAGCATCTCCTTGTGCAGCCTGCTCTTCATGGAATCTATCGGGATTTTGATTCCATAATGATCGCCAGCATGGCGCTGGATGTTTCGTCAACGCCGCGTAACATATAGAGGGCTCAGTCTTCTCATGCCCCTTCTCATCCTGCACCAGTTGCAGAAGACGATCATATGCGTTTTTAATTCTGCATGGAGAAGCGGGACAGAGACAGGATCGGTCTATCGACCATCCCTGTTCTTGTTCCGATTATGATGCTCCGAAGGAAAGTATCAAGGCCGACGGAGTGCTGCTGGTTCAGATAAAGTTAATCTCTGAAACATGACGTTCTTTGATATTGTCAATAAGTATCAATGTGTTGTAGGCAAGA # Right flank : GATACATTATATAGAAGCCCTACTCTCCCGCCGGGGCTGTGCAAACCGCCCCCCGGCCTGATACACCCCGGTGCATGGATGCACGCCCGCTCAATCAGGTAACGGATCAGTCGCCACCCTCACCCTCTCCTTCAAAGCGGCGGGGTAAGGTAGGGCGCAAGATCAACGTGGAGTTGGAGCCAACCGCGCTCGCCATGATGAGGCGGTTGTGGCGGGAACATATCGCGCATCATCGTGTTCGCATGCTGGTGGTGATTCTGCTGACGGCGCTGATGGCGGGCAGCACGGCGCTGTACCCGGTGGTGATCCAGCATGCGATCGATCTGTTCAATGCCCGTGACCGGCGCATTCTGTATCAGATTCCGGTGCTGGTGCTGATCGTCACCGCCATCAAGGGTGCTGCGATGTATGGGCAGACCGTCTCCATGCAGCAACTGGTGCTGATCGTGATCAGGGAGTTGCAGGAGCGCATGTTCAGTCACCTCGCCCATGCCGATCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 4 1928917-1930042 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018194.1 Granulibacter bethesdensis strain NIH8.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1928917 28 100.0 33 ............................ CCGTGTCAACAGCCGGTGCCCGGTCGAGATTAT 1928978 28 100.0 33 ............................ CCTGTTCAGCCGGGAGACAGCATTGCCGCGCAG 1929039 28 100.0 33 ............................ ATAAAGGGCGAGACGACGACAATCAGCCTCCCC 1929100 28 100.0 33 ............................ CTCGTCGATTTCAAACACCGTGAAGGCGGAAAA 1929161 28 100.0 33 ............................ TTACCTGACCTCGATGCTCAACACCTATCTAGC 1929222 28 100.0 33 ............................ CAGGTCCGCGAGGTTCAGGGTATGGACGAGAGG 1929283 28 100.0 33 ............................ CCAGCCAGCTGGTGGTGGTGATCGGTGGCACGA 1929344 28 100.0 33 ............................ TTTTCCCCTTCATCTCCGGCGCTCCTTCAGCAT 1929405 28 100.0 33 ............................ GTGGCGCGTGAATATCAACCATTTTGGGCGTCC 1929466 28 100.0 33 ............................ CTCGTCCAGCATCATCAGCAGGCGGTGCTTGTG 1929527 28 100.0 33 ............................ CCAGTCGTAATACCGCCAGAGCTTGTATGATCC 1929588 28 100.0 33 ............................ CGCCACTGGAGCCCCCTGATGCTCCGGTCCCGA 1929649 28 100.0 33 ............................ CCAGTGGCGCGGTACGGTCACGCCGTTGATCAG 1929710 28 100.0 33 ............................ GTGATGAGCCCAGCCGGGAAGACGGGGGGACTA 1929771 28 100.0 33 ............................ TGCTATAAACCAAAAATTGTCTGCTTAATGCTG 1929832 28 100.0 33 ............................ CAGGTTCGCCAGCGTGGCCGCACTGGCGAAGCT 1929893 28 100.0 33 ............................ GTGGGGCGCATCCTCGCTATGCACGCCTCATCA 1929954 28 100.0 33 ............................ CCGTTAACCCGGTGCTGCTGGATGGCAGCGTGT 1930015 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 34 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : TGGTCATGAGAATATCGAACGTCTCACCCGACGCCAGACCGGACGCGCTCTGGCGGAACGCTCCGTCATTCCGAAAATGATCGAGCGACTGAAACAGCTTTTCGAAAAAGAGGCAGAGGCCATCCCATTTCTTGAGGATGATGAGTGATGCCAGCCACTCTGGTCATTACAAGGGATGTGGAAGCGCGATATCGCGGTTATCTTACCTCGATCATGCTGGAGCTTTCTGCTGGCGTTTATCTTTCTCCACAACTATCCTCAGCGGTGCGTGAGCGCACCTGGGCGGTGCTGTCAGAATGGTATTCCGAACTGCGCCGTGGCGCCATCGTGCTGGCGTGGCCTGATGCCAAATCCCCCGGAGGCATGGCAATTCGCACCCTTGGCGACGCCCCCAAGGAGATTATCGATGCCGATGGGGTGTTGCTTGTGCGGAAAAGTTAACCTTCGAAACATACCGTTCTTTGACATTGTCAATAAGTATCAATGTGTTGTAGGCAAGA # Right flank : CTTACGCTTCAAGACACCCATCTGCCCGACAGCCGAACCTGCCAATCGATGAACTGCCGCTGACGCCGGATGCTGTTTTCGAGACACTGGCATTGCTGGCCCCCGATGATTTCGTGCTGACCGCTTCCGCATCGATACGCCAGACAGTTACTATACTTTTTCTTCCGGTGATTTTGGCTGGGGCTTGGCGGCCACAGTTGGACTCGCCCTTGGTGAAGAAAAGAGCGGTCGCAACCGTCCAGTCATCTGCCTGATGGGTGATGGATCATTCCAGTATTCGGTGCAGGGTATCTACACCGGTGTACAGCACAAGGCCCATGTCATCTACGTAGTCTTGCAGAACGAAGAATACGGAATCCTTAAAGAATTTGCAGAACTCGAAAACACTCCGAATGCTCCGGGTCTCGATCTGCCAGGGCTGGATATTGTAGCACTCGGCAAAGGATACGGCGCTCAAAGCCGTGAGGTGGCAACGGTGGATGCCCTGAAGGAAGCCTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //