Array 1 11491-12592 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCI01000002.1 Haemophilus influenzae 60294N1 Contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 11491 37 100.0 34 ..................................... TAACCGTTGCTGAGAATGCTGAGGACAGAGTGTC 11562 37 100.0 33 ..................................... TAATTTTACCCAACATTTTAAAGCCCCTTTTGT 11632 37 100.0 34 ..................................... CTACCCCTTACTTAAAACTTGGTTAATTCTTTTT 11703 37 100.0 35 ..................................... TTCCATTGATTTAGCTTGTTGGATTGTATCAGTTG 11775 37 100.0 34 ..................................... TGTAGTGTTGGCTCAACTGAATCCAATACAGTAG 11846 37 100.0 36 ..................................... AATTCCGTAAAGTTCACAAAGGCCGCAACCGTGGTA 11919 37 100.0 36 ..................................... TATTAAAAATGACGCAAATTCTATCTTCAAGAATTA 11992 37 100.0 33 ..................................... CATCTTCTTCTTCTAACTTTTTAAGAATACTTT 12062 37 100.0 32 ..................................... GTCAAAAGCTCTTCTATTAATTCTGCTTTTAA 12131 37 100.0 34 ..................................... AGTCATTTCCTGAAATACGCATATACTCTTTTCC 12202 37 100.0 35 ..................................... TTTGGAACCTTGCTATCCTTTCGAACTACTGCTAT 12274 37 100.0 36 ..................................... GAAAATGCTGAACTAACAGCATCTCCAAATTTAACG 12347 37 100.0 33 ..................................... TTCCAAAGCTGATCTATATCTCGTAAGATTTTA 12417 37 100.0 32 ..................................... CATGATAATCTCCTATATAAGAAGTACAATAC 12486 37 100.0 33 ..................................... CGCCAAATTTAACGTTAGAACGTGCCATGATAA 12556 37 91.9 0 ................................A.A.T | ========== ====== ====== ====== ===================================== ==================================== ================== 16 37 99.5 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TAATTAATGTAGATGATAGGAGAAAAATTATGTGGTTACCTGTAGCAGAATTAATCGTCGCAGCTGTTGTAACAGAGGTAGTTGACCGCCTCATGGAAGATTAGCGCCTCTCAGCTTGGCAAGTGCTGTGAACTTGCTACATCAATATTAGCTAGCCAACAAAACGGGAAGAAGAATATGTTTGAACGCTTACTTGTTGTCGCGATTGCTACAGCCATCGCAAGAGCAGTAGAAAACGCATCCAAAGATTAAACTTTGGCGGCATGCGGTGCCGAAAACCGCTATTGTGTCATAATGTATTAACATTATAGAAATACTACTGGTGTATTAAAAAAACTCTGTTAAAATACGCCGCACTTTTGACTGAATTTTGAAAAAATAAGAATGATAAAGGTTGTTCAATATTTAACCAAATCAATACCTAACTCTTCAGATATCAGAAAAAGTTGGAAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCCACTGCA # Right flank : TTAAGTTTTTACTTCTATCTTAAAATTATTGCTGGCTTTGGCATTCCCCAAAATCTCCGCTAAAATAACCGCACTTTTTCTTATCTTCTAGGAAAGCAATATGTCAGATATTCTGAATAACCTTATTCATCTTCTTATTAAACTTGAAAAAATTGATGATTTAATCTTTCGTGGTGAAAGCCAAGATTTAGGTTTTCGTCAAGTATTTGGTGGGCAAGTTGTAGCTCAAGCATTATCAGCGGCAATGCAGGTGGTGCCAGAAGATCGCATTTTACATTCTTGTCATGCCTATTTTCTTGCTCCAGGAGACAGCCAATATCCGATTATTTACGATGTAGAAACCTTGCGTGAAGGGCGTAACTTTTCTGCATTACGCGTAAAAGCCATTCAACATAAAAATACCATTTGTCATGTAACAGCCTCTTTCCAAGTGCCAGAAAAAGGTTTTGAACATCAAAATGCAATGCCAAATGTTGGCGCGCCTGAAGACTTTACAGATG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 96104-95286 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCI01000017.1 Haemophilus influenzae 60294N1 Contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 96103 37 100.0 33 ..................................... AAATTTTGCAAAGAACAATAGCCACTATCAATA 96033 37 100.0 33 ..................................... CACTACGCCCACAAATTTAACGAAAGGGATTGT 95963 37 100.0 34 ..................................... TTCTTGCGTGGCATAAATAAAGCCTTTCTGTGCT 95892 37 100.0 34 ..................................... TTTTCTGCATAACCAAACTATCGCTATTGCTTGC 95821 37 100.0 33 ..................................... CCAATAAATGATTTATGGCGTAAGAAAATAGCA 95751 37 100.0 33 ..................................... AAAGAGGACTTCAATCCTTCTAGAGAGTTAAAT 95681 37 97.3 35 ..................A.................. TGTTTTAATGGACTATCTTGAACATCTGACATATC 95609 37 100.0 35 ..................................... ATTTATATCAGCTTTTGCATTGTTGATTTCTCGCA 95537 37 100.0 36 ..................................... TTACCAACTAAGTGACGATATAACTCGGGGTAATTT 95464 37 100.0 33 ..................................... TGTTGCCTAATACTTTAGCAGTTCTAGAACGTA 95394 37 100.0 35 ..................................... ACGGCAAAATAAGCCGTCATCCCCACATCACTACG 95322 37 97.3 0 ..................................A.. | ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 99.5 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TAAATTCTAGGAAGAAAAAAATGGCACAATATTTAATTGGTTACGATATTTCCGATCCTAAACGACTACAACGGATTTATCGTCGAATGACAAATTATGCGACCCCCATTCAATATAGTGTATTTATTTTGGATGGCACAGAAAAACTACTTAAGCAATGTTTAGCAGAGATTATGTTAATTTTCCACAAAAAGGAAGATGATTTGCGCGTCTATCCCTTACCAGCCAATGCGGCTCAATGGCGACTAGGTAAATCAAGTTTACCTGATGGGATTTACTGGACGGCCTTGCCTACAGCCTTAACCTTATAAAATGCTACTGGAGTATTTCACAAACTTTGCTAAAATATACCGCACTTTTGGCTGAGTTTTGAAAAAAATAAGAATGATAAAAATTGTTCAATATTTAATCAAATCAATACCCAACTATTCAAACATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGACTCTAACACTCCACTGCA # Right flank : TCATGGTCTTCAGGAATGTCTTTGTTCACGATAGGTCGAAAGACATCGCCTGCCTAAAAGGGATGTACATCGCTAAAGTGCGGTTAGTTTTCAATATAAATTGGAAATCGACCGCACTTTTTATTTCCTTTCATTTTTACAAATTTGTATTTTCGCCTTTCTATTTATGACTTTTCTATAATTCACTCCGTTAGTAATTGATTTTTAGCTCAGAGGATTGAGCGCTAATTTAGTTTGTTAAAAATCTATAAAGAGAAAATAGAGAATTAAGCAATTATTGGCATATAAAACAATTGTTCTAATTTAAAAATGTGAGGGAATTAAAATGGCTGGAATTAATAAAGTAATTATTATTGGTAATTTAGGGAATGCACCAGAAATTCGAGCGATGCAAAATAGTGATACGGTTGCTAATTTTAGTGTGGCGACATCTGAAAGCTGGGTGGATAAAAATACACAGGAAAAACGTGAAAATACCGAATGGCATCGTATTGTGCTTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //