Array 1 2169317-2173355 **** Predicted by CRISPRDetect 2.4 *** >NZ_LK053000.1 Haloferax prahovense strain Arc-Hr, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2169317 30 100.0 35 .............................. ACGTAGTAGAGCGCCGCCAGCGCGCCGGCGTAGAC 2169382 30 100.0 40 .............................. CTTACTTTACGGGGCAGGACGTTGACGTGGAAACATTAGA 2169452 30 100.0 37 .............................. TTGGGGACAATGCCGCAGTCACTAACATAGAGATAGT 2169519 30 100.0 34 .............................. GATTTGTGTCGTCTTAGCGTTCCAGTCGTTGATA 2169583 30 100.0 37 .............................. GGCTTGCGGGCGTCCTCGGACTGTCGGCGCTCGACCT 2169650 30 100.0 38 .............................. TCTCTACCGTGGCCCGGCGACCTTTAGTGATAATGAGA 2169718 30 100.0 32 .............................. GATGAGGTGTTGGATTGGTAGATGACCACCGT 2169780 30 100.0 36 .............................. TTCGGCGAAGCCAGCGAGGCCGATGAGGCCGAGAGC 2169846 30 100.0 37 .............................. GGATCAAGGACGGGACAGGACCAGCGGACAACAAAGC 2169913 30 100.0 34 .............................. TCCAGTCTACGCGACGAAAGACGACATTCCAACC 2169977 30 100.0 36 .............................. ACCGTCGGCGCGCTCCGCGAACGTGAGGAGGCGGTA 2170043 30 100.0 36 .............................. CTTGACGAGACCCAAGACCGCGAAGCAGGCGCTGAG 2170109 30 100.0 37 .............................. GATAAGTGACGCGGTAGATGACGGGGCAGATGGATGG 2170176 30 100.0 35 .............................. GGTGCGGGGTTCGCCGGCTTCAAAACCGGGCAAGT 2170241 30 100.0 38 .............................. GGTCCGGCCGGTTGGTCGCGGCGTGTGGGAGCCGACGC 2170309 30 100.0 36 .............................. TTCCCACAGGTTGAATCCTACGAAGTCGAGTGGCCG 2170375 30 100.0 35 .............................. ACCCAAATCCGCCACGAACAGGAGAACGTCGTACT 2170440 30 100.0 36 .............................. CCACCGGCAGACGAATGGCGCGTGTGGGACCGAGAC 2170506 30 100.0 35 .............................. TTGAATCCGACGTCAACCCATTCACAGGGCAACTC 2170571 30 100.0 36 .............................. GACAACATCATCACCGGGCAAGTCGCCAAATGAATC 2170637 30 100.0 36 .............................. GTCGATGGCGTCGAGGAGGAGATCTGTCGTGACCTC 2170703 30 100.0 35 .............................. CATCATCACCGACGAGTCCTTGCCGCCACTCACGG 2170768 30 100.0 36 .............................. GTGGATCGTCCAGCCACCGTCAGTTATCAGTTTCCC 2170834 30 100.0 36 .............................. GCCTCGTCCTCGTCCTCGTCGTCGCTCTCGACTTCG 2170900 30 100.0 35 .............................. CGTCGTGTTGACAGTCCCATCCATGTGGTCGTAAC 2170965 30 100.0 34 .............................. GCGAAGTGTTCTTTGACGGGAGCACCGTAAGCGT 2171029 30 100.0 37 .............................. TTCGACACGCGAACGGACGAGGAGTTGGCAGCGGCGC 2171096 30 100.0 34 .............................. CACACCCGAATTGCAGGTGTGTTCTCAAGCCAGT 2171160 30 100.0 36 .............................. TAAATGACACCTTCGTCATCCCACGTTGTTGGGAGC 2171226 30 100.0 34 .............................. GACTTTCCGCGGGCGCGAACATCACCATCCTCTC 2171290 30 100.0 36 .............................. TCTTCGCAGAGGCACTTGAAGCCGTTGACAACTCGA 2171356 30 100.0 35 .............................. GACCGAGGAGACCGTGGCCGAACAGATCGTGTGTC 2171421 30 100.0 35 .............................. ATGTGACGGTAGAGGATGTGAGGACTGACCACACT 2171486 30 100.0 35 .............................. GAGTTCGCCCAAGAATGGCTCGGTGGACCGGGCGC 2171551 30 100.0 34 .............................. TGGATAACTCTCTTCGTTGGACTTCTTGCCCGTC 2171615 30 100.0 36 .............................. ACGGCGATAGTGTGGGAGGCGTTCAGGTCGCCGCTC 2171681 30 100.0 37 .............................. CCCGGAGTGCGACGCGCCGGTCGAACCGCGGGGTGAG 2171748 30 100.0 35 .............................. TGGCCTTCGGTGAGGAAGTCGGTGAAAGAACACAG 2171813 30 100.0 36 .............................. AGTCGGCTTTCGAATGATGTCGGGGGGGAAATTAGG 2171879 30 100.0 35 .............................. CTTTGTGAGGAAAACAGACACATGAAGATGGAAAA 2171944 30 100.0 34 .............................. GTACTCACGACCGAGTGAATCGCTCTCACTCGTC 2172008 30 100.0 36 .............................. TTTGACCTCGGCGGGATTCCGCCGACTGCGTGGGAG 2172074 30 100.0 37 .............................. CGCCAATGATGGTGTTGTAGGCCGCGCCGAGGAGCGT 2172141 30 100.0 36 .............................. TCCGAAACATCCACGCCAAAGACAATGTTGAGGGGA 2172207 30 100.0 37 .............................. AGTCCATCTTGGAAGTCGGCGTCCTCGGCGAATAGGT 2172274 30 100.0 35 .............................. AACGTCCTAGCTAGTCTCATGGTTCCCCCCGATTT 2172339 30 100.0 36 .............................. AGCATGTACGGCATGCAGGACTCCAACGTTGCGATT 2172405 30 100.0 36 .............................. TTGCCACTTCTGGGACGCTTCGACGTTCTCATTCCG 2172471 30 100.0 36 .............................. ACCGTCGGCGCGCTCCGCGAACGTGAGGAGGCGGTA 2172537 30 100.0 35 .............................. AGGGACTGATAACAGCGGCCCTATGGGCCGGCATG 2172602 30 100.0 36 .............................. CACGTCCGGCGGACGCGACACCTACCACACGGTCCG 2172668 30 100.0 36 .............................. AGACCCAAGTCACTCCGGGCGTCTCCAGCGCCCGGG 2172734 30 100.0 37 .............................. TAGAAGGAACCACGCCCACGCGGTCCTTCTGTGGCGT 2172801 30 100.0 35 .............................. GTTGAATCCAAATCGCATCCCCACCAACCAAATCG 2172866 30 100.0 38 .............................. GGCGACGTAGTGCCTCGAACTCCTCGCGCTCGCCGTGT 2172934 30 100.0 36 .............................. GAACAGAAAACTCAATGGTGGATTCAATCCAATAAG 2173000 30 100.0 34 .............................. AGGCTCACACTCGGGCGTTTCACCGTGTCCTCGA 2173064 30 100.0 35 .............................. CACGACACCCGACGCCGAAATTGCCATCTGGCCGC 2173129 30 100.0 35 .............................. CTGGTTGAGGACCACGAAGCGGAACTTGCCCGCGA 2173194 30 100.0 37 .............................. GTTCGGACCGAGACCACGGGTGGCGGTATGTCGGCTT 2173261 30 90.0 35 ................A.........G.A. CGCTCGCCACTCGACCGGAGTGCATGAAGAAGTTC 2173326 30 80.0 0 ................A.A.A.AC....T. | ========== ====== ====== ====== ============================== ======================================== ================== 62 30 99.5 36 GTTTCAGACGAACCAAGCTGGTGTTGAAGC # Left flank : ATGCCAATAGTAGACTCTTCATCTGATAACATGCGCAAGGCCGCTGAGTGGATGGTCCCGTCCGATGACCGAATCTTGGAACTGATTCGGGAACACGGGAATCTGACGCCGCAAGCGATTAACGAACTTGGTGGCCCTGTCCCCGATCACGCGAGCACTCGTTGCTCGAAACTCGTGAAACACGGTCTCCTCACTCGAATCAGTCGAGGTCTCTACGGCATCACCGACGGCGGTCTCGCGTACTTGGACGAGGAGCTGGACGCCTCGACGCTGGAGCCTGCTGACGACGAGTAGCTGTTTTTGTGATGTCTCGCTGTTCGTGACCACGGCACGTTAGCCGAGGGTGGTTAGTTAGAAAGGGATGATTGGGTGGTGTCCGGATTGGCCGATACTGCAGCATCTTCCATCGACCTACTTAAACAAACCCGCTACTGAAGGTCGATGGAAACTAGCGCCTGTAAACAACAGTTATGGGCTTTGAGAGTAGAATTTTGACCGGG # Right flank : CGACATCGAGCCGCCAGTATCGACTTGACACCTTGCCTCGAGTTCACGGCCATTTTTCACCTACCAAAACTTTATGCTTAGTTGCCACGATTTTCCTGTGAAATATGAAATGAGAACACTCGTCAAACTACGCGCAGAGAGGGATTTTGCGTACGACAATACATACAATCACAAGTTACAGGGACGGTTGTACAACGACCTCCGTGACAACGGATACGGGGCAGTCCTCGACGAGGGTCCGAAGACGTTCAGTTATTCGAACATTTTTCCCCCTCGAGATGCCGAAGCAGGCGACTCCCGAAGTCTCATCTTCGCAGCATCGGACCAAGATCTGGTGACGTCGGTCGCCTATGGACTCTGTTCTGAGCCGGAGGTGAATATCGGGGAGATGCCCCTCCGAGCGGAAGAGGCGTTTACACTCGACCCGAAAGTTGGTGAATCCGGGTCGCTCACCACAGGGACACCAATCGTCATTCGATTCGGGACTGAGACCGCCGCAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCAAGCTGGTGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 2182091-2185935 **** Predicted by CRISPRDetect 2.4 *** >NZ_LK053000.1 Haloferax prahovense strain Arc-Hr, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 2182091 30 100.0 35 .............................. GGTCGACCACTCCTCGACGTCAAGGCCGGCGTAGT 2182156 30 100.0 36 .............................. GTCGAGGACGGCCGCAGGGTCGTCGAGGTCGGTCGC 2182222 30 100.0 36 .............................. GAGCTCCTTCGGGAGCACGGAAACCTCACTCCCCGG 2182288 30 100.0 36 .............................. TCTGACCACTCCGACGCCTGGAGTGAGTCGCTCGCG 2182354 30 100.0 37 .............................. AGTAACTATGACAGAACCAGACGAGGGAGGGATTCGT 2182421 30 100.0 34 .............................. CCAATGCGGCGGTCGGGTCATCCCCGAAGCCCAC 2182485 30 100.0 34 .............................. GCTCAGGCTCAACGTGGAAAAACCACCAGCGGCG 2182549 30 100.0 35 .............................. TCCAAACCGACCGTTTGCACGGATTGAATCAGGAG 2182614 30 100.0 36 .............................. GACCTACAAGAGTGCTCACCATCGACTATTATACCT 2182680 30 100.0 37 .............................. ACCCCGCGAGCATCATCGTCCCGAGCATCACCTCCTG 2182747 30 100.0 36 .............................. GAGGAAGAAGATCGAGGGCCAGAAGAAGAGGAGAAA 2182813 30 100.0 34 .............................. GGGATCAGTGACGGGCGGCATCCCGGAGGCGCGA 2182877 30 100.0 36 .............................. GATTGCACGACCAGAGAGCAACCGTGCATTATGACG 2182943 30 100.0 35 .............................. ACGGTCGGAGAAACGGAGCGAGTCGGGTGCAAATC 2183008 30 100.0 35 .............................. GCGAACTCGACTCGACGGACCTCGCGCTCATGGAC 2183073 30 100.0 36 .............................. GATAGGCCGGGTTGGGGATTTCGAGTTCCAACGGCG 2183139 30 100.0 35 .............................. TCTATCCCGGCATGATTCTCGAAGTCACCGGGACG 2183204 30 100.0 36 .............................. CGTGTAGAGCGACTGCGAGCCCGAGTAGACCCGCGA 2183270 30 100.0 36 .............................. TGACATCACCAACATCGACTCCGAGTCGGTCAGCAG 2183336 30 100.0 35 .............................. ACTCTCGCGCCATCTCGCCCGCGCGGCCGTCGATT 2183401 30 100.0 35 .............................. AATGCGTTAAGCGGCGATTTGGTTGGTGGGGATGC 2183466 30 100.0 36 .............................. AAGACGACGTCAACATCGATCGAGCGGTGATGATCC 2183532 30 100.0 34 .............................. CGTGCAGGACGGACATTGTCACTCCAATCTTCAT 2183596 30 100.0 35 .............................. ACGATGGGAATTTTCAGCAACAGTAGCAGCTCGGT 2183661 30 100.0 35 .............................. GACTTTCAGAAGTTGGAGAACGCCGGGAAGACGGA 2183726 30 100.0 37 .............................. TATCATGAAACGATACTGCCCGAAATGTGGCCACCGA 2183793 30 100.0 34 .............................. TTGCATCGTTATAAAGTGTCACGTCAACGCTTGT 2183857 30 100.0 36 .............................. CGCTCTCAGCGTTCGCATCCGACCCGTGGGCGGTCT 2183923 30 100.0 35 .............................. CTGAGTGATCCACTTCGGAAGCGGCACAGGGATTG 2183988 30 100.0 36 .............................. CAGCAGCGCGAACGTGTCTGTGTCGACTGCGGGGAG 2184054 30 100.0 38 .............................. CGCCAGCCGCGTCGCGCATATCTTTCTGGTCGACACCA 2184122 30 100.0 34 .............................. TTTCCCCCTATATCCATGTCTTCATAGGCTTCTT 2184186 30 100.0 35 .............................. ACGATGATGGCCGTTTGATTCGCGTCAGAGAGATG 2184251 30 100.0 36 .............................. ACGTACGACTTCAAGCGCTTCATGGTCTACGTCGTC 2184317 30 100.0 34 .............................. TCGCTCTGGTCCGGGTTCTAACCCCGCAGACCGC 2184381 30 100.0 36 .............................. CAGTGGTCATCATTTCGGCTGGTGTCGCAGGAGCGG 2184447 30 100.0 38 .............................. TCGCTGGCAGGAGTTCGACATCCCGCATCCGGATGCGG 2184515 30 100.0 36 .............................. TTCGACCATCGCGACCCCTCGCTCGAACTCCTGAGC 2184581 30 100.0 36 .............................. AATCAGCAACACCGCAGTCACGAGCAGGAACGCGCT 2184647 30 100.0 35 .............................. CAGAGAAATAGGCAAGTATGGCAATGGCAGATTCA 2184712 30 100.0 35 .............................. TCTGTCTGGGCGGTCATCCACGACCCGATTCGCCC 2184777 30 100.0 37 .............................. AACCAACGAAATTCAATCGCGTCAAGGTTGACAAAGA 2184844 30 100.0 36 .............................. AAGATGGTGGCTTGCAATGGAGGTGTCCGGCCATGA 2184910 30 100.0 33 .............................. GAACCCGGTGCCAGAGGTCAATGCAGAGAAGGT 2184973 30 100.0 35 .............................. GGATAACCGCGGTCAACAACGAGGTGTTGACCGTT 2185038 30 100.0 37 .............................. GGGAGCTACGCGACGCGGAGCGACCTTCCGGACGAGT 2185105 30 100.0 37 .............................. GTCTCCTCGAGTGGAGCTGCAACCTATGCGTTCGACG 2185172 30 100.0 37 .............................. GAACTCGGCGATGCGCTCGCGGTCGCGCTCGACGCCC 2185239 30 100.0 36 .............................. AGATTGTGCGGTTCGTCCTCGACCATGCGTGGAACC 2185305 30 100.0 47 .............................. TCCGCTCGCGATAGTAGCCCTCGCCGTCCGCCGTCCGGCCGGCGCGG 2185382 30 100.0 35 .............................. ACGCGGATGTCATATTCTTCGCCGTCTTGGAGGCC 2185447 30 100.0 37 .............................. AGATAACAACACTTGCCCTTGTGGGCATCGGCGGTGG 2185514 30 100.0 34 .............................. AAGCCGCTCGAGGTCCACGTCATCGAGGAGACTC 2185578 30 100.0 34 .............................. AAGCCGCTCGAGGTCCACGTCATCGAGGAGACTC 2185642 30 100.0 37 .............................. ACGAGTTGGGCGTCCACCCGAACACCATCGGGAACCA 2185709 30 100.0 36 .............................. GCCGCACGACTTGAGGAGGCAGACCCCGAAGACGTC 2185775 30 100.0 35 .............................. GGTATGTCCGGCATACTCAGCGGTGTAGTTCGCTT 2185840 30 100.0 36 .............................. CGACAGCCCATGCCAGTCCGTCGTGTCGAGACGGTG 2185906 30 76.7 0 ..........A...CTTG...GA....... | ========== ====== ====== ====== ============================== =============================================== ================== 59 30 99.6 36 GTTTCAGACGTACCAAGCTGGTGTTGAAGC # Left flank : AGGAAACTTTAGAGCGTACCGTTGAGCATCCAACGCTGAAACGCCACGTTTCGTATCAGTATCTGTTGCGCTTAGAGGCGTACAAATTACATAAACACGTGATTGGTGACAAAGAGTATGAGCCGTTCAAAAGGTGGTGGTAATGTACGTCATTGCAGTATATGATATGGAAGCAGAGCGAACTCAGCTGATGCTCTCTCTGCTTCGACGATATCTCACACACGTGCAAAATTCTGTTTGTGAAGGTGAATTGACTGATGCGCAGTATGCGGTTTTAACCGAAGAAATTGAAGAGACAGTTAAGCCGAACGAATCTGTGATTCTGTACCAACTACGAGACGACAACTGGTTGAATCGGAAAATCTATGGCTCTGACCCAATGGATGACCATCGGCTCATCTGACCATCAACCTACTTAAACGAACCCGCTACTGAGGGTCGATGGAAACTAGTCCTTGTAAACAACAGTTATGAGCCTTGAGGGTGGAATTTCGACCGGG # Right flank : CTGGCCGGGGTCGCGAGCGTGGCCGGCGTCACCGATGAGTTTCAGACGAACTCCTGTGAGATTACACTGTTGACGAACTAGAACTATCTCTTAGAGGACGGAGACCGGTAAAGCGTATTTTCTATGTAGTCAATGCGTCCTCAGACCCATCACCAAACGAACAGTATCCGTTGAGACGCCTATATTTCTAACCTAGTGGATATATGTTCAAGCATCTCGTAGAGCCGAGTATGCCCGACAAAGATCAGAACGACTCCCGCAATTCGATGACCCGTGGTGAGCGAATCCGCGCCGCCGCCCGGACGCTCCGAACGCCTCGGACTGCGTCGTGGGTCGCGAACGAGACAGAGACCTCCGTCAAAACGGCACAGAAGTACCTCAACCAACTCGTCGAGGACAACGTCCTCCGGAAGACCGAACAGGGGGATCAGACACTCTACTGCGTTGACCAGCTGATGGCGACCTACCGAGAGGTCGCAGCACTCCAGCGAGAACACAGC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCAAGCTGGTGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //