Array 1 923-178 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTDC01000362.1 Flavobacterium covae strain CF1 NODE_362_length_1419_cov_12.0812_ID_28629, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================================================================= ================== 922 36 100.0 30 .................................... TAGTAACATAATCAGTTGTCATTTGATATT 856 36 100.0 31 .................................... TAGAATCTCGTTTATAATTTGACCAATTATG 789 36 100.0 30 .................................... GAGATTTAGTTAAACCTGCAAAATCAGGAT 723 36 100.0 29 .................................... ACAATTTTTAATCTCTCCTGATTTTATTG 658 36 100.0 29 .................................... TTTGATGTAGTATTTTTCATTATATGCTG 593 36 100.0 30 .................................... TGCGGTCTTGTTACCTCTATTAGTTGCAAG 527 36 100.0 31 .................................... ATTTTCTTTTTCTACCGCTGGGATTCGTTTA 460 36 100.0 30 .................................... CAATCCCTCGGAATAAACAATTTTACCTTC 394 36 100.0 145 .................................... TTGAACTTCTTTATAAGTCATTGCCTTACGGTTGGGAAAGCCCTTATTTTACTCACGCTGTTTCTATTGTTTTTTATAGGAGTTCGTGAATGATTATTTGAAGGGTATCTACAACTTATAGTTCATCGTCTTTATGTAGTACTAC 213 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ================================================================================================================================================= ================== 10 36 96.9 43 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : AATTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAGTTAATACTAAAGAGAATTATAACAAAATAACCAATATTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCTCCTAAATTTATTTACGATTTAGCTACTAGTTTTCAAAATGATAAAAGGAATAAAGATTGGGAAAAATTTGTACACCAAAAAGAAAGCGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAACAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAGTTCATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAACACTTAG # Right flank : GTTAAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAAATCAACATCCAGTTTGTCACTCCTACGTAGAAGGAGTCTCATAATCAATAGCATG # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-1.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 979-2782 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTDC01000055.1 Flavobacterium covae strain CF1 NODE_55_length_15584_cov_12.4236_ID_28015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 979 36 88.9 82 ..GA.TA............................. CCGTTTCAAAACATTAGTCATCGTAAGTTGGTTTACAAACACCAAGTTAATATTTATTATAGGTGTGTTTGTGAATCTCCCT AA [986] 1099 36 91.7 29 C.G...A............................. CCTTTTTTTAAAAAACTAAACTTTTACTA C [1103] 1165 36 100.0 30 .................................... AGTACGGTAGTGTAATTTAAGCAGGCTTAA 1231 36 100.0 30 .................................... TTTTCATCTGTTTGTTTTAAAATAACTGAT 1297 36 100.0 30 .................................... ATGCTTGCGATATGCTTCAACGATGGATAG 1363 36 100.0 30 .................................... CGAATATTTGTAGCTTTTCAAAAGGTTCAT 1429 36 100.0 30 .................................... TGTATTGCTTTATGATACGGACAATAACGG 1495 36 100.0 30 .................................... AGTGGTAAAGTCATAAACAATAAAGTCGAG 1561 36 100.0 30 .................................... TACCCTCGTTTCGTCGTAACCTATCTGTTT 1627 36 100.0 30 .................................... AAATAGCATCCTCGCAATGAATCTCGACAG 1693 36 100.0 30 .................................... GACACTGTAGTACTCTAGATTATCATCAGG 1759 36 100.0 30 .................................... ATTTTTCATTAGAGACCGCTATTAAACCAG 1825 36 100.0 30 .................................... ATTAGAAGTAGCTAACTGCTCTTCTAAGTT 1891 36 100.0 30 .................................... CATCCAATATTTGGTCAAGAGTGTCATAAA 1957 36 100.0 30 .................................... AGAATGTAACTCTAAATAAACTTCATTAAA 2023 36 100.0 30 .................................... AAGAAATGAAAAATAAATATATAGCGAAAC 2089 36 100.0 30 .................................... GTCAGCAAATGATTTTAATGCTCGCAAATA 2155 36 100.0 30 .................................... TCAGGGAAAATGGTTTAGAAGTTGAAGTTA 2221 36 100.0 30 .................................... TACCCTGACGATGTGAAAGGGAAATGGTTA 2287 36 100.0 30 .................................... GTCCTTCATATTGTTCCAAAAGCTGTTCAA 2353 36 100.0 30 .................................... TGGCCAAGAAATAAATGTAACAACTTATGC 2419 36 100.0 30 .................................... CAAATGCTTCATTGAAGTAAGGGGGAACGA 2485 36 100.0 30 .................................... CAATTAAGAGCAAAACAGATGGTTTTATAT 2551 36 100.0 30 .................................... ATAGACCAAGATAATCCTAATAAATTTAAT 2617 36 100.0 30 .................................... TGTTTCATTTGTATTAGTACAAATCATTCC 2683 36 100.0 28 .................................... CAAATTTTTTGCAAACCAATACCAAAGA 2747 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================== ================== 27 36 99.3 32 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : TGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAGCAAGCTAAAATCGATTTGTTGCGTATTTATGAATATAGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACATCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTCGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACTTCATACAGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGTTTCGGCGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTGTTT # Right flank : TAGCTAACAGCTTAGCTCTTAAATATCAACAGATTAAAGCAAAATATCGTTAAAAAAAATGCTTCTTTTTTGGGATGCTATGCCAAAATTGAAGCATTTTTTTATTTCTAAAATAATTCAAGTTGAGTGGGTTGAGGTCCCGAAGGAATTTCTACTTTTCCCCAGAAATTTTGTATATTCCCAAATTGCTTGTCTGTAATTCGTAATATACTTACTTTTCCTGAAGGAGGTAGGAGTTTTTGTACACGTTTTTCATGTACATCAGCACTTTCGCTACTCGCGCAATGTCGTATATACACCGAGTATTGCATCATACTGAATCCATCTTTCAAAAGTTGGTTCCGAAAGCCAGAAGCATTTTTTCGGTCTTTTTTAGTATCAGTAGGCAAATCAAAAAATACAAACAACCACATGATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTGCGCTCCCCAGCAAAACATTGCTGCAAGGAACTAGCCGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //