Array 1 163387-163614 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEMG01000018.1 Haladaptatus paucihalophilus DX253 contig00019, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 163387 30 100.0 37 .............................. TGGCGTAAATTCCAAACGCCACCAGTGCGATGAATTC 163454 30 100.0 37 .............................. GCTGGGCGAGATGGGAGGGACGTAACGAGTGGTCGGT 163521 30 100.0 34 .............................. GGGCGTTTTGCAGGCAGTGGCCGACACACGGCAG 163585 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 36 GCTTCAACCCTAGGACGGTTCGTCTGTAAC # Left flank : TCTGTGTGACGAGTTCAATCGGCTTGCCCTCATCCATGCGTCACTCGTTGATACTCGGCTTGTGACCACGCCGATGCTGCTCGTTGCGCTTGTGCGAAACGAGATTGTATCACCAGCTGACGCGGAGTCATTACTCGATGAGATGAGTACGGCACGAAGTTGGTCGAAGAACACCTATGTCCAACGTGCGAGAGCCGTCTTGAATAGCCAGTGACTTCTCGATTTGTGTAGCTCGAATGCAGGCCGTCAGCTCTTTGAGACAGTCCAGCGCTCGGAACAGAACACTGAGCTCGTCAACTTCCGCGAGAAGCGCGCTGAGAGTCAGCAAGTCGAGAACAAGTACCTCGATGTGCTCAAACACGCGAAGAACGTCGCCAAGACGAATGACGTGATGGTTGCACGACTCGGATATCGAGAGCTCGCGACCCACTACGGTTGTGCGTACAAGAACGATGGCTATCGAGTGATGGAAGAGATGGCCGAGCGTTCCATCACGCGAT # Right flank : AAGTCCTCTATTCGTCCCTAACTCATTACCAAATAGGCTTCAAC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAACCCTAGGACGGTTCGTCTGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 80406-80178 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEMG01000001.1 Haladaptatus paucihalophilus DX253 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 80405 30 100.0 36 .............................. GACTTGTGGAGTGGCCTAAGGATCTCGAACAGGAAA 80339 30 100.0 36 .............................. CTCGTGTATCGCGTCGACGCTATCGGCGTACTCTCC 80273 30 100.0 36 .............................. CGCCTCGTAGGGGTTGAGTCGGTCGAAGGCAGAAAT 80207 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTACAGACGAACCGTAGTAGGGTTGAAGC # Left flank : GTAGTAGGGTTGAAGCTCTTCCCGAGAAGGCTGTTTTCGCGGCATCAT # Right flank : GACGTCTCCCAGGTCGAACAGCTTCTCGCGGCGACGTTACAGACGAACAGAAATAGGTCACTTACTATGATTTAGTTATCGAGATATCGACATCAAGTAGAAACTGAATATGAACTATTCCCGAGGGTCTTCTACAAATTCGTAAAGACCTCGATTCACACGTCGAATCCAGCCTGCATCGACCAGACTTCCAAGTGCATCGTTAACGCGCTGTTTTTCTAGACCTGTAACATCTCTTATTCGAAGTGGGTTAACCCGCTGTTCGTCTTTGAAGACTTGCAGAACAACCTCCTGATTCTCGGAGGGGCTAAACTCTTCATTAACCACAGTTACTATAGTACTCATTCCGTCACCTCATTAGTCCTTTCGTGCAGAATTACTTAGTAATTTCCAACGTATTTCTGTAGTCCGTTACTAAGTAACGCTTATTAAGATGGCGCTACAAACAGAGTATAGAAGCGTGGATGGTCAGAAACTCTGGCCGGGTGGTGGCACACCCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCGTAGTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 361-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEMG01000024.1 Haladaptatus paucihalophilus DX253 contig00025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 360 30 100.0 37 .............................. TTCGCCCGGTTCGTTCTCGCACCCCGGCAGTCGGCAG 293 30 100.0 36 .............................. TGGAACCGCCCTTGTGGCACAGCAGCAAGCCGATGA 227 30 100.0 35 .............................. GATGGGTATCTTCACATCGACTACAACGCAACCGA 162 30 100.0 35 .............................. CTGTTTTTCGAGGCGGACAGAGGTTATCTCTGCCA 97 30 100.0 36 .............................. TGTCATTATTCGGTCCTCCATGTGCTCGTGAATCGC 31 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 36 GTTACAGACGAACCGTCCTAGGGTTGAAGC # Left flank : AAGTGACGTGCCATTCCCGTGTTCGTCATCGAATTTGGTTCCTTGGAGCGCACGCCATATCCGACCACGAACTTTATGATGGAAGTTTGTATCTGGTGCAGCGTCGGCTTGTGCGACCAAGTCAACTAACAAACGCATCCTCACACATCACCTCCTGTAAAATCAATACAGTTTTCATCTCTACAGATTACTCTTGTTATTGTATGTATATATGTTTTTATCATGGTCTGACATAGAATCTGATCAAAAGATGGGCCAGTCGCAACAGCTCCTACCGTTGGCTTCCTACCAGGGGCTTCAACCCGTGTGATTCTACTGGATGATCTGAAATCTTGATAAGGTGATTCCTACTAATTCGGCATTCTACAAGGTACCAAATAAGAATATATTTCTTTAAGACAACCATCGACCTCCTAGGGGAAGAGGGGTTATTGGGGGTCGACGGAAACAACCAAGTGTGAACAGTGAGAAGAGCCGGTGAGTGTCCAGAATTGGGCATG # Right flank : CC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCGTCCTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 10085-10247 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEMG01000024.1 Haladaptatus paucihalophilus DX253 contig00025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10085 30 100.0 37 .............................. TCCCAGACTCAAGGCGAGTTTTATCTTCTCTCTAATC 10152 30 100.0 36 .............................. CACGAATACGAGGACCCGATCAATGACTGACGAATA 10218 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 37 GTTACAGACGAACCGTAGTAGGGTTGAAGC # Left flank : GAGGAAACGGTCGAACATCCACGATTGGATCGAAACGTGAGCTACCAGTACTTGCTTCGCATAGAAGCGTACAAACTCAAGAAACACTTGCTCACTGGCGAAGCCTACATCTCGTTCAAACGGTGGTGGTGAGATGGTTTACATCGTTGTTGTCTACGATATGCAGGCAGATCGGACACGTCTCATGCTAAACTTCCTCCGGAAGTACCTCACGCACGTCCAAAACTCCGTTTTCGAGGGAGAAGTAACAGAAGGCGACCTCGAGACGATTCAGAACAAGACACGTGAAACACTCAAGTCCGACGAGTCAGCGATCATCTACCGAATGAGCTCGGAGAAGTACGTTGATCGAATGGTTGTCGGTGAGGACCCCACCGACGACGCACGGTTTCTTTAAGTCGCCCGTCGACCCCCCGGGGGTTCATGGGGTATTGGCGGTCGACGGAAACGACCAAGTGTGAACAGTGAGAAGAGCCGGTGAGTGTCCGAAATTGGGCATG # Right flank : CTCTTTTTCCAGTTGTTTCCGTAGCCTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCGTAGTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA //