Array 1 206708-208778 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPR01000001.1 Flavonifractor plautii strain BIOML-A2 scaffold1_size267196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 206708 33 100.0 34 ................................. CGCTTCGTCCTGCTCATAAGGCAAGGGATTTAGG 206775 33 100.0 37 ................................. TCGCCGTCCAATGCAAGGGACAGATAGGATTTCAGCC 206845 33 100.0 34 ................................. CGCTTGCCCACCAGCTCGGAGAGCGCGTCCTCAC 206912 33 100.0 36 ................................. TTCGATATCTGCCTTCATAAAGCGAGCCATCTCAAG 206981 33 100.0 34 ................................. TCATATGAGCGGCCTACAGAGCCGGATTGCACGG 207048 33 100.0 37 ................................. CCTGGCGATCTCCGTTGAAGGGGAGGCCCTGGGCAGC 207118 33 100.0 35 ................................. AAGATTCCCTCCAGTAAAGGTGACCGCCTGGCTTA 207186 33 100.0 35 ................................. TTGTCCACAAGGCCGCGCAGCTTGGCGCGCATCTG 207254 33 100.0 36 ................................. GATTCCACCCCTTGAGCTTCCACAGGACAAGCAGGC 207323 33 100.0 34 ................................. AACGGCGTCCAGTCTCAGATGTGCAACATGGCCG 207390 33 100.0 37 ................................. AGCCCTGGCAATACGGTCACGGGGAAACAAAGGCAAC 207460 33 100.0 34 ................................. ATAGACGGCCCGGTCAGAGGCCAAGCGGAAGTCG 207527 33 100.0 35 ................................. CGCCCGCCTGGCCTGGAACACCCGCACGCCGATTC 207595 33 100.0 35 ................................. AGAGGTCTGAGCGTCCAGAGTGGCGGTCAGATAAC 207663 33 100.0 35 ................................. AGAGAAGGGGATTATGGCCGGCCGGGATGCCGATG 207731 33 100.0 34 ................................. CTTTGGGGTATCCCCAAATACACACCCGTTGTCC 207798 33 100.0 33 ................................. TTGCGTTGGCAATAAAAGCATCCATAATAAGCG 207864 33 100.0 37 ................................. GTTTGGCGTCATCTTGCGCCCTCCTCCCAATTTGCAC 207934 33 100.0 34 ................................. GGCCCCGTGCCGATTTTGAACCATGCGGCGGGGC 208001 33 100.0 34 ................................. TTCAGCGACGCCCATCCTGTGGGTGACGGCACCG 208068 33 100.0 36 ................................. GTAAGGAGGCCCTGCTCCTGCTCAATGATGACATTG 208137 33 100.0 37 ................................. CCGGAGGAGGGCGAGGACGGCAAGATCTATGTGGCCG 208207 33 100.0 34 ................................. TAGAGCTTTGCTTTATGAACCTCGTACCGGGCTA 208274 33 100.0 34 ................................. TCCAGGATGGCGCTCTGGCCCTCTGCGAGCAAAT 208341 33 100.0 37 ................................. AATGGCGTCCAGTCTCAGATGTGCAACATGGCCGCTC 208411 33 100.0 33 ................................. CGCCACCCCTCATTGGTGCAGACATACCGCCGC 208477 33 100.0 33 ................................. CCAAAGAGCGGTTTTTTGTCAAGACACCGAAAA 208543 33 100.0 33 ................................. TGGTCAACAGTGGGAGTCAGGAAGCCGCTGCGG 208609 33 100.0 38 ................................. AGTGAGAAATACGACATCACCAAGCATCCCCGGTATAA 208680 33 93.9 34 ............A............G....... CAGCGGCTGGACCGCGGCCACATGGAGTATGTCT 208747 32 93.9 0 ..............-................C. | ========== ====== ====== ====== ================================= ====================================== ================== 31 33 99.6 35 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : GGACGCCTATCCGCCCTTTTTGTGGAAGTGAGGCCATTATGCTGGTTTTGATTACCTACGATGTCAATACAGCGGATGCCGCCGGGCGCAAACGCCTGCGGCAGATCGCCAGGCAGTGCGTCAACTACGGCCAGCGGGTTCAGAACTCCGTCTTTGAGTGTAAGCTGGAGCCAGCCCAGTATAAACTCCTTCAGGCCAAGCTGTGCGCAATCATGGATCCCGAACGGGACAGCCTCCGCTTTTATTCCCTGGGAAATCGCTATGAGCAGAAGATCGAACACTTTGGCTGTAAGCAGACCTACCTTCCAGACGAACCTTTGATTTTGTAGCGTGCGAAGTCCAAGAGGACACGCCTTCTCCGGCCGGTTCGCACCCAAAAAGCATAAAGGAAAGCTTCATGGAGCATAGGCGCGTTTGTTTTCGTATGCTCAGCCTTCTTCCCCTTGTGCAAATAAGCAAATTGAGCCAAGCAAACTCTCTGCTCTTTGGTAAAGTTTGCT # Right flank : TGTCTTACAGGGGCGCCTGGTCAGTTTGCAGGAGACGCCGCATAGGGGCGCGGGTCGATTCAAATTTTCACCCCGCGCCCCTGCTGTTTGCGTTTCTTTTCGTTGACTGGTATAGTAGGGAATGATATAATAGGATGATTATGACAAAAACTATGGTGGGAAGATCATATTATGTGGATTTCAAGTGACTGGAAGGACTATGAGCTGCTGGACTGCGGCGGCGGCGAGCGTCTGGAGCGCTGGGGCAAGTATCTGTTGGTGCGGCCCGATCCTCAGGCCATCTGGCGTCCGGAGGGGCGGCATCCCGGATGGCGGAGGCACGACGCCCGGTACCAGCGCGCCTCCACCGGAGGGGGCCAGTGGGTCAAGAAGGAACTGCCCCAGCGCTGGACATTGGGTTACAAGGGGCTGACCCTCAACATCAAGCCTATGAACTTCAAGCACACCGGCGTCTTTCCGGAGCAGGCGGCCAACTGGGATTTCGCCATGGAGCGCATCCG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 33461-33764 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPR01000009.1 Flavonifractor plautii strain BIOML-A2 scaffold9_size123119, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 33461 33 97.0 35 ........C........................ AACTTCCATAAGGTCTGGTTATCGCATTTGGTACA 33529 33 100.0 34 ................................. ATACGGGGTACACTTCGTGATATGCACGCCAGGC 33596 33 100.0 34 ................................. TGCCGGACGACCTGGGCTCTGAGTTTCTGGTGAC 33663 33 87.9 36 ........C..C....A.....T.......... GCGTCTCAGGAGCACCTCAAAAGACGCACCAGAGGC 33732 32 75.8 0 ........C.............T.A..CCT.G- | T [33757] Deletion [33764] ========== ====== ====== ====== ================================= ==================================== ================== 5 33 92.1 35 ATCGCTCCTCGTGAGGGGAGCGCGGATTGAAAT # Left flank : CAATGTCCAGCTGGCGGAGAAGACCGGCTTCTCCGAGGAGGATGCCCAGGTGATCAAGGAGTGCCTGCGCACGCTCTTTGTCAACGACGCATCTTCCTCCCGACCGGAAGGCTCCATGGAAGTTATCAAGCTGTTCTGGTTCGAGCATGATTGCAAGAATGGGCAGTATTCTTCCGCCAAGGTCCACCGGTCTGTGACGGCTACTCTGCGGCCCAGTGTCGAGGTCCCCACGAAGGTTGAGGATTATGAGATCTCTGTGGAACCGCTTGTTGGGCTGGCCCTGGAGGAACTGGAGGGGATGTAAGATATAGCAGGCCTTATGAGGTGCGAACATGCACAAAGACATGCTGCTTAGTTCGCACCTTGCATCTAATAATTTCCCGGACCAATCCCATACATTTTGTTCTACTCCTAGTATTTTGGCTGGATATACACAGCAGGGTTTGGCATTTTACTACATTCTTTTGCCGAAAATATTGCAAATTTTGTTTTAGTTTGCT # Right flank : GAGGAGGGGCTCAGCATGTTCTGGTAGTTGGCATCAGGGCACTGTCCAAAATGGCTCTCATTACTTTTGCATAGAATAGTTTTAGACAACGATTAGGGGAATTAACATCGTTGGATAGTCCAATATTTGTCTAGGCATTTGCACACAGGCACCACATGACCTTCGGAGAAGGTCACCACATGACTTTCTTTTCAGAAAGTCACAGATGCCGCTTTATATCCATGCAGCTAAAGCAGAGGGTCTTACAGCGGCACAGATAAAAAGGAGAGATAAGACATGAATGCCAGATTATTAACTGCCATGGAAACGGAGCAGGCGCTTGCCAATCTGCTGTCTGACCTGAAGGCCCTCATTTCCGGGGAGATCAACGAGACACCTCCGCTGGACGGAGTGACGCCGCTCAACGGCAGCCCGCGTTGTGCAGTGGTGAGTTCCAGGTCTATCATGGAGTCACTGCGTTTCAACATGTCGCCTCGCTACTATCTGCAGGGCGCCCAGGC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:0, 3:3, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTCCTCGTGAGGGGAGCGCGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //