Array 1 25825-25439 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASS01000022.1 Gilliamella apis strain N-G1 NODE_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25824 28 100.0 32 ............................ TTAACCACTTTTGCAATCTCGCCAGCCTTCGA 25764 28 100.0 32 ............................ ATAGAGCGCGAGGGCAATATTTTCGATTGACC 25704 28 100.0 32 ............................ CGGTACAAAGCCATAATAAATCAGCTCCAGTC 25644 28 100.0 32 ............................ CTTTAGTTACTATTGGTGAGGAATTATTAAAC 25584 28 100.0 32 ............................ ACGACAAGTTAAAGGCTGAATTGTGGGAAATA 25524 28 100.0 32 ............................ TAAAAATAGCGTGTATTCTCGGTTTAATCAAA 25464 26 85.7 0 ...................--.A.A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 CTTCTAGGCTGCATAAGCCGTTTAGAAA # Left flank : CGAAAAACGTTTAACCGCACAAGGTAAATGGTCAGCCGAAGTAAAAAGCAAAATGGTTGAAAAATGGGGCAGCGTTCATTTGAACTATCCACACCTTCATTTTGCTAGCAAAAGCACAGGGCAACATTTTATTATGTGGCTGAAACAACAAAAATGTGCAACGGCTGTTCAAGGTACATTTAATAGTTACGGACTCAGCAAAACAGCTACTGTTCCTGATTTTTAACTAAATAATAAGGGCATTATTATAATGCCCTTAGCTACCAATATCTAACCATATTAACAGCATAAATTTTGAGGAGCGTACTTTTTAAAGCTAAAAAATTTGAGGAAAGGGGTTTTTTGAAACTTAAATACCATGCAGTGTTAACCCTTTTTTTTAACTAAAAATAAACTGTTTAAAAATCAATTAATTGAAAAACTACCGAAAAAAAGGGTTTTTGCAAAGTAAAATAGATTTTGCCTTTTGCATAACGATGTTTATAGTATTTTGGGTTCTA # Right flank : TTTGAGGAAAGGGGGTTTTTGAGTTTAAAATCCTTAATAACTGAAATGATCAGAATAGGTAAAAATATCTAAAACTAGGTAGGCAAGAATTATGAAATAAGGTTTTTGCGGATTGATGTTGTTGAGATTAAACTTTACAAAAGTTAACAATTTAGATTCTAAAATCAGTTGCATAGATTATTTTCAATCACTATACTTTTAGGTGATTTTTAGCGCAATAATAGGCTGTTATTTAGTCAAATTAACTTAAAAAAGCCAAATAAAACATGGAATTACTTGACAAGGCTGTTGTTATGAACTATAATTTTAAACACCAAACACCAAACACCAAACCTGCCCAACTTATACTTTAAAATCATCTTATTGTTGCAATCAACGTTTAGTCTTTTCTAGTAATTTATTTTTTTCTCGATTTTTAAGGTTATTTTTATTCTCGCCGCTTTTTAGCGTTTTCGCCGTTGCTTTAGTTTTATTCTTTTCATCAAGTAGTTATGCATTAA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAGGCTGCATAAGCCGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 535-1221 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASS01000001.1 Gilliamella apis strain N-G1 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 535 28 100.0 32 ............................ CCTGCTCTTTATCGCTCTCACATAGTCATATG 595 28 100.0 32 ............................ TTGAATCAATGCTAGCAAGTTCTAAATCTTTA 655 28 100.0 32 ............................ AATTCAAAAAATCATTAGACATTCATTCACCA 715 28 100.0 32 ............................ CTAATTGCGCGGTTGGGGATGCGTTCAGTGAT 775 28 100.0 32 ............................ ATACACCGATGTTTGGACTCATACTCCAGTAG 835 28 100.0 32 ............................ ATATCGCTCCAAGTGATACCTGTTAGCAAAAT 895 28 100.0 32 ............................ AAAAGAAAATCGTTTACAAAAAATCTTAAAAA 955 28 100.0 32 ............................ AGAGATAGGCATAGGCACAAACTGACTAGCAC 1015 28 100.0 32 ............................ GATAGGTGCAGGGGATGGGTTTATAAATTGGC 1075 28 100.0 32 ............................ TCTAGTGAATTTTTCGAGATAAATAACTCTAT 1135 28 96.4 32 ....................C....... TCTAATCAAACGTTAAAAAATGGCGGTAAAAT 1195 27 89.3 0 ............G.......A...-... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.8 32 GTTCACTGCCGTATAGGTAGTTTAGAAA # Left flank : ATCAGCTAGTTCCAATAATAAAAGTTTATTTTTATCAATCAGTTTGATGCTTCTCATTTAGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATGGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCACAAAACAACAAAACGTCCGAAACGAAAAGAATAAAAAATTTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACATAAAATAAAATAATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTGCCAACTGCATTTATAGTATATTCGATTCTA # Right flank : ATTAATTAAAATTATAACACTCGAAATCCACCAAACTAGAAAAGTTTAGTAAAGGAGTTTTTTAGGTGAATAAATTCACCACATGTTATAATCATGTTTAATTATAATTAACTCTGTAAATATGATGAATAATAGTACAATTGATAACCAATTAAATGAAAAAATGGTGCTTATTTTCAAAGCATTATCAGATCCGGTTAGAATAGAAATCATTAAATATTTAAAAAGTATAGAAACAGAGGTTATCTGTGGTGAAATTGGTCAAGCAGTTGGTATTAGTAAACCTTCAGGAACTTATCATTTTAGGTTATTACAACAAGCAGAATTAATTAATGTAAGAAAGAGCGCTAGGGAAAAATATGTGTGGCTTAATAAATCAACATTTGATAAATATGTTACCGGGTTTTTTGATAATCTTTAAAATACTCAAATATTGATTTATTGTTGAATTTATTGCTTTGATTTTATCAAATATTATTTTTTATCCTTTGCTGTTAACC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 245972-246359 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASS01000001.1 Gilliamella apis strain N-G1 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 245972 28 100.0 32 ............................ GCAGGACGATCGGCGTGAAAAAGTGATAAATG 246032 28 100.0 32 ............................ AATTACGCATTTGGTGCGCCAGTTAATACTAA 246092 28 100.0 32 ............................ TCGAAAAGGAGAATATGTTGATAAAGGCGCTG 246152 28 100.0 32 ............................ TTGCACGTAAAGCAAAAGCGATATCAATTGAT 246212 28 100.0 32 ............................ TTATAATTACAAAAATTATAATTTTTTACATA 246272 28 100.0 32 ............................ TTGCCACCAAACTCATCTGTCATTATCTCGGT 246332 28 75.0 0 ............A....CTTT....TT. | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : ATCCAATAAATCGTTAACGTTAGTTATAACATCTGCTAATTCCAATAATAAAAGTTTATTTTTATCAATCAGTTTGATGCTTCTCATTTAGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAGAACGAACGAAGGCGGCAGGCAGTCACGCAGTGACCACTTGCGTAGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGGCAACCCTCTTAACTCGGACGTAATCGCCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTAAAACAACCAAAAAATTTGAGGAACGGGGTTTTTAAAGCCCAAAAATCCATCCCATCACTAACCCTTTTTTTTAACTTGAAATAAAATGATTAAAAATCAATACGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACAACATTTATAGTATATTGGATTCTA # Right flank : AGTAATTAAAATGGATTTTTAGTATTTAAAACTCGCTGTTCTCAAATTTATCTATGAAATAATTAAAACGCTTATATAAGCGTTTTAACTCTGATTAATATCATTATATCTACTATAAACTATTAGAACATTAATAGTTGTACAATTAAATTGCAGTCATATAGACCTGATTATTCAGTAAGTTTTTAGGATCAAACTGTTGTTTAATTGCACGCATTAATTGGCGATTTGCTTCAGGAATGGCAGCATTGTAATAACTTACTTTCGCCGTTCCGATGCCATGTTCTGCTGAAGGCAATCCTCCAAATTCAAGACATTTTTGATAAAGCGCTTGGTGAACATTTTGCAGATCAGATTGCCATTGTTTGTCATCACGATTATCACGCAAAATGCATAGATGAATGTTACCATCACCAGCATGACCAAAGGCTAACATGCGCATTTGAGTTTGTGCTTCTAGCTGTTTGGTGAAATTGATAAAATCGCTAATGCGATTTATT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 112000-112639 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASS01000003.1 Gilliamella apis strain N-G1 NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112000 29 100.0 32 ............................. CAACAACAAATGGTATTACCAGCACAACTAAA 112061 29 100.0 32 ............................. CCTTTAATAAAGCTGTCTACAATTTGATACAT 112122 29 100.0 32 ............................. TCTTTTTAGACTCAACAAATACATCATATAAA 112183 29 100.0 32 ............................. ATTACCCCACTCTTGAGCTATAGCTTCGGCTA 112244 29 100.0 32 ............................. ACAAAATACCTATACTTGGAAACACTCAAGCT 112305 29 100.0 32 ............................. CTGACAGTAGCCTCAAAAATAAAAAACGAAAC 112366 29 100.0 32 ............................. AGAGCAAGAAAAAGCTCAAGACGCTATGTCAA 112427 29 100.0 33 ............................. CGTTTATCGGTAAATGCGGTGAAGATTATCAGT 112489 29 100.0 32 ............................. GTTCGTGATCGTCGTAGGTTCCGTTTTTCTCC 112550 29 100.0 32 ............................. AGACTTGATATACCCTTTGAAATTAAGTCAAT 112611 29 79.3 0 ............A........C..TTGA. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.1 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTTCAACGATGATGGTGAACCAACCAGCACCGCCGGCCGCCCTATTCTATCTGCCATTGAAGGCCAAGATTGTGATCAGGTGGTGGTGGTAGTCACCCGCTACTTTGGCGGCATCAAATTAGGCACAGGAGGACTCATTCGGGCTTACGGTGGTTCGGCTAGTCACTGCTTACAACAAGCAGAATTAATCGAACTTATTGCTAGAACATCATTACAATTTCATTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAAATTTTGATGCTGAAGGTGTAACTGTCATTATTGCTATAACACAAGATAATCTAGTCATACTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGCAAAAAATTGGTAGAAATTGTAGACTGCGTATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : GTTCCCTGTGTGTACAGGGATTAACTTCAAATTCACACAAACCGCTTAATAAAAGTGTCCAACTTTATGGGGTCACTTCATTCTGGCGGTTTTTTATTGCCCAGAATTCCTAAATAACTTACTATTGCCTAAAAGAGGAGATGGTATGAAAAGAATTACTTTATTTGGGATAGCCTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAGGAGATGTTACTTGGTGAGTGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12928-12472 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASS01000012.1 Gilliamella apis strain N-G1 NODE_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12927 29 100.0 32 ............................. CTTTTCAATCCGACGATATATCGCATCGCCAT 12866 29 100.0 32 ............................. ATAGTAGCAAGTGAAAAAGGTAAACCGGTTGT 12805 29 100.0 32 ............................. GTAGTAAGTCTAGATAGAGGTTTTGCCCGTTA 12744 29 100.0 32 ............................. GTGGATTTGATTATAAAGGCATCACCATTAAT 12683 29 100.0 32 ............................. GATCTGTTTTATAAAAAAGGATCTTCTAGATC 12622 29 100.0 32 ............................. TTGCTCCAATTCTTTTTTATATTGACGATTTA 12561 29 100.0 32 ............................. GCGATCCGCCAGTTAAAAACGGATTCATTTTA 12500 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTGTCTGCTGGTGGTATTGAACCGCCACCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCTCCAAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAAATATCTATATTTAGA # Right flank : TTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTCTAATGATAGCTATTTATAAAAATAAAAGTTAATAATCATATGCATAGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAACATTAATCATCAATTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCAGGCAAAACAACAGCCATCAATACTGTTGCACGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACCCGTGAACCTGGCGGTACACCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACTGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30959-31170 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASS01000012.1 Gilliamella apis strain N-G1 NODE_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30959 29 100.0 32 ............................. GATAATTAAATAGTAAACACCAACATATATAA 31020 29 100.0 32 ............................. GCTTGAATAACTTAAATAGTTTAGCGGCTGGA 31081 29 100.0 32 ............................. TCTCTTTCATCTGTTACCATTTCAACAAATGA 31142 29 89.7 0 ..............T.........C...T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : GGACAAAGTTCACAAGCTAAAAGTATTATATTGAATTTTAATAAATGCTATAGCCGTGAACAGTTCAATGCTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAAAGATAATATTGATCTTTATTTAGCATATCAACAAGATGGAAAAGTTATTCCTTACTGTAGTAGTAACGAATATGCTTGGGAACAAAGCCATATTACAATTAGTGCATCAAAATGGGCTAGAGTTAAAAATACCGTCCCACAACTTGACGAACAGCATCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTGTTAATTGAGACAGAAAAAGAACCTTCTTTTTATTCCAAGGAATTAGGCTTTTATCTAAATTAATTTAAAGTTAAATATTAATAATTTTAACTTGCAATAAGTTGAGTGAATTTCATACAGAAAAAATCGGTAAAAAATTACTCCCTTATATTTCAATTATAAAACAAATGGTTATAATTAGG # Right flank : TTATTACTGGCTAATTCGTTAAAACTGCCTGGCTAGATTTGGGTGAGGATGGAATACTTTGATCATCTGCAAAAATCAGTAGTTCGCCGTCGCTATATCTAACGTTTTATGATTGATGGTGAGGTTAAGCCAATGTTAGCTGTATTAGAGTATTTAAATGAACATAAAATAAAACCCAACCGCCGACACGTTGGGTAGGCTGCGCGTGGGATTGGAGGTCCTGTCGGAGACTGCCCGCGAATACCTTTTAAATAGTATAGGTAAAAAAATGACTGGCGTAAATATTGAATTCAATGTACAAGACGCACTAATCAACATAGAATTTGCTTTGCTCGATACACATGGTTTATTCAATCATATAAGTGGAACATTACTTGATATTTATGAAGCACGCTTTAATGCACAGGAATCACCAGATGGTATAACACCATGGCAAACATTATCACCATGGTATCAAGAAAGTAAGCCAAAACAAAAAAATAAAATCTTAACGCTCGATG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 507-1253 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASS01000005.1 Gilliamella apis strain N-G1 NODE_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 507 28 100.0 32 ............................ TGTTGCTGAAGCAGTTTGGTGTATTGATAGTG 567 28 100.0 32 ............................ TGACGGAACCGCACAAAGCCGAACTATAAAAT 627 28 100.0 32 ............................ CCTGCTAGTGGTGTTTGTGCAGGTAAATCATA 687 28 100.0 32 ............................ TGTGGCTGTATCAATATTTAAAATGTCGGCGA 747 28 100.0 32 ............................ GCATCATATTTTAATTTTGCACACCGTAGCTG 807 28 100.0 32 ............................ AATAAAGAGGGGAAAGAGTTAAAATACGAAAA 867 28 100.0 32 ............................ AATTCAATCAAACAAATATTATGCGTTGCGAG 927 28 100.0 32 ............................ CGAAAAAGTCAAACTATCAGAACTCAAATGCG 987 28 100.0 32 ............................ ATGCCCCGTATACGTGTCAAAATGACTGATAA 1047 28 100.0 32 ............................ TACCACAAATCAACCACGAGTTTTACGACTTA 1107 28 100.0 32 ............................ AGTTAAAGACCGCATTAACTCAATGAATGCAA 1167 28 96.4 32 ....................C....... ACTAAAGCTGGCCGATTGAAACCGTTATAAGT 1227 27 89.3 0 .......A............A..-.... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.9 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : ACATCAACTAGTTCCAATAATAAACGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTAGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCACAAAACAACAAAACGTCCGAAACGAAAAGAATAAAAAATTTGAGGAAAAGGGTTTTTAAAGCCTAAAAACATCCTATTATTAACCCTTTTTTTTGACTTAAAATAAAATAATTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTTTCTTTTTGCCAACTACATTTATAGTATACTGGATTCTA # Right flank : ATATTAATTATTTCTAAAAAGATTAGGAAAAATTTTTCAAAAAGCTAAAAATCCAAATTAGTTATAGCTTTGTTAAATAAAAAACCCCAGTAATTGGTTGTCCAACTATTGGGGGTCACTTCATTATGAACGGTTTTTTATTATTGGTTAGATAATTTTACAATTATCCTTGGTATTTTTTCATGACAATTGACGCATTAGTACCGCCGAAACCAAAGCTATTAGACATTACTGTGGTTAATTCACGTTCGGTTGGCTCGGTAATAATATTCATGCCTACTGCTTCATCTGCAAGTTCGTCAATATTGATACTTGGTGTAATAAAGCCGTGTTCAAGCATAAGTAGTGAATAAATCAATTCTTGTGCACCGGTGGCACTTAATGAGTGACCAGTCATAGATTTAGTTGAAGAGATAGCCGGGATATTATCACCAAATACTTGTTTGATTGCCCATAATTCTTTGACATCACCAACTGGAGTTGAGGTACCATGGGTATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 86902-87468 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASS01000005.1 Gilliamella apis strain N-G1 NODE_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 86902 28 100.0 32 ............................ TAAGCGCCCACATTTTTTAGCCTCATTAACCG 86962 28 100.0 32 ............................ ACCGCTGCCAACTGCGTTCATCAACATACACC 87022 28 100.0 32 ............................ TATAGAAAGAATTAAAAATATGGAAGATGAAT 87082 28 100.0 32 ............................ CGGTCGCACCGTAGGTGGGGCTGTTCGATGGG 87142 28 100.0 32 ............................ TCATTAATACGTTGACGTAAAATTAACTCGTA 87202 28 100.0 32 ............................ AAATAAACTAAAGATATAATAAACACATAAAT 87262 28 100.0 32 ............................ ACACCACCAAAAATCATACCGAAAGCGGCATC 87322 28 100.0 32 ............................ ACGTATCAAAACGTTTCTAACTGACTATTTCA 87382 28 100.0 32 ............................ AGGAGTAAGGGAAACGAGGCATAGGCGACAAC 87442 27 92.9 0 ....................-...A... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : AACCTAACGTTAAGTTACCACCAGGGCTTAAAATGAATACCTGCTCACCAACTGATGGTGGCCACCATGTACGGCTTTTACCAGCACGATGGGTGAACCAAGGTAACCACGCGGTAATTAATTCACCGGTACGGACTTTAACCCGATCACCATTGGTTTGATAAATAACACCAGGGCGAATCAGGTTTTCAATTTTTCGTAGAATGTCGACTAAGTCGGCGGGATGATAATTTTTCATAACGACTATAATGAAATTTTATCAATTAAAAATAAAGTAAGCGTAGTTGTAGTGGTTGGGGTTACAAATTTTCAATGAGTTAAGTTAGAACAGAGTGTGGTTTGAATAATGCGATCATTAACTTTCTTTTTACCCTTTTTTTAGTTAAAATAAAAATAACAATAAAATCAATACATTAATTAAGTGGTTAAAAAAAGGGTTTTTAAAAGCCAAATAGCACTTTGCCTTTTTGCTAACAGAGTTTATAGTATATATTGTTCTA # Right flank : ATTCACACAAACCGCCTTTGGGCGGATTTTTATTGCTCAAATCTTTTAAATCAAATACCATTGCTTAACAAAGTAAGGAGAATGGTATGAAAAAGATTATTTATTGTTTGTTGTTTGTCCCTTTTTTTGTTTTCAGTGATATGGTTAAATTTGAAGACTGGACGGTAAATTCAGAAGTAGATCCTATTACAGATGCGAAAAAAATTAATATTATGATAGTAGATAAAACAAAAAATAAAAACGAGACTGCAGGATTTGTGTTTAATTGTAAATCCGTTTCTCTTGTCTCAATGAACCTAAAAGATTTTCCGAAAGCTGATGATGTAGGAAATTTAACCAAAGTTATACTAAGAGTTGATAAAAATGTCCCAATTGAAATGCAATGGACTAAATCAATCATTGGTTATGAATTTTCCAATTTTGATGAAATTAGCAATTTGCTTAAAAATGGGGAAAAGTTAGTGGTTAGAGCTCAATATTCGATAACTAAAGACTTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //