Array 1 64733-64430 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QNTU01000019.1 Halomonas sulfidaeris strain SST4 contig_19, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	=================================	===================================	==================
     64732	    32	  69.7	    35	..T.A..GGAATG-.................G.	TTAGCGCGCCAGCGCTGGTCCAGATAGAGCCAAAA	T [64711]
     64664	    33	 100.0	    34	.................................	CACATCATACATCAGGGAAAGCTTTATAGCGGTC 	
     64597	    33	  93.9	    35	............C...................G	TTGGCGCGATGGTTAGCGATCTTTGCCAGCGTTTT	
     64529	    32	  93.9	    35	..........A...-..................	TCATGCAATCGCTGCGCTCGCCAGCATCCTGGTAG	
     64462	    33	  81.8	     0	.C......A...TA..............T...A	|                                  	
==========	======	======	======	=================================	===================================	==================
         5	    33	  87.9	    35	GTCGCGCCCCGCACGGGGCGTGCGGATAGAAAC	                                   	       

# Left flank :   GCTTGCCAAAGACTTTGCTTAAGCCACGTACTTTAATTTTGACGGGTCGTGTCTCGTCCATCGGCGATGCCTTT
# Right flank :  ATGACCTAAGTTGGCTAGGCTAAAGACTCTCATTAATTCGCATAACGCCTGCCATTTTTTCTTAATCAAATTTTATCAATCAAACAAGGTGATTTATGGCTGAACTACTCGATCCTACTAACGACTATGTGTTTAAACGACTCTTCGCAGAAGCACCTGAGCTACTTGTCAATTTGATTAACGATCTCCGTCCTGACCTGCCCGATATAGCTTCAGTAGAGATTTTAAATCCCAATATTGAACCGAGCGAGCTAACGGGAAAATACATCATTCTTGATGTGCTTGCGCGTGATGGTAGTGGTCACTGCTATAATGTGGAAATACAGGTACGCCGTTATGGCGCATGGCACAAGCGTGGATTATTTTATCTTACCCGCATGCTTGGTTCTCAACTCAACATGGGTGAGGATTATCGAGAATTAAGGGCTTCAGTAGGCCTGCATTTATTAGATTTTGATCTATTTACTGATACCGAGGAACAACGCGAACAAGCCATATGG

# Questionable array : NO	 Score: 3.47
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCGCCCCGCACGGGGCGTGCGGATAGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCGCCCCGCTCGGGGCGTGCGGATAGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [3-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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