Array 1 327-93 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXQ01000011.1 Gallibacterium anatis IPDH697-78 contig000012a, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 326 36 88.9 30 A..A..A..T.......................... AATTAAGCGTGTTAATCGTTGCTGATGGAA 260 36 100.0 30 .................................... TCTGCCAAAAAGTAAGAGAATATAATAGTG 194 36 100.0 30 .................................... GCATTCAATAAATTAGAGAAAAGCGGCGAA 128 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTTGTAGTTCCCTTTCTCATTTCGCAGTGCTACACT # Left flank : AAATGCACAATTATTAAATTTTAAAAATAATAAAGAGCGTATCGGTTTAGTTGTTGATGAGTATGGTGATATTAAAGGCTTGGTTACGTTGGAAGATATTTTAGAAGAGATTGTCGGCGAATTTACCACCTCTAATTTGCCGTCTATTGAAGACGAAGTACAACCACAATCAGACGGCACGGTCATTATTGATGGCTCGGCTAATATCAGGGATTTAAATAAAATGTTTAATTGGCATCTCGACACGGATGAAGCCAGAACTTTCAACGGTTTTATTCTGGAACATTTGGAAGATATTCCACAAGAAGGTACAGAATGGCGAATCGGTAATTTAAAAATTAAGATTCTGGAAGTCAGTGATAATATGATTAAACAGGCTAAAGTGAAAAAGTTAAGTTGATTGTTTAGAAGATAAAAATACCTGCTGCGGCAGGTATTTTATCTGTAGAAAATCAAACCAAATATACACTAAACTTACCACACCATTGATAGTAACCCCC # Right flank : TTTTAACTCTGTGCTAAACGCCTTATCAAAAGTTGTAGATTTCGCAGTGCTACACTGCAACCGCTAAAGGAATGTGGGACTTATTGGTTGTAG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTTTCTCATTTCGCAGTGCTACACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 42-671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXQ01000013.1 Gallibacterium anatis IPDH697-78 contig000013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42 36 100.0 30 .................................... ATTACATTTAATTTTTTATTACTTAATTTC 108 36 100.0 30 .................................... ATTAATGCTATCTATACATTGCAACAGATA 174 36 100.0 30 .................................... GTGCTGGTTGGTTGCTTGATTGAACAACTG 240 36 100.0 30 .................................... TTGGTTACTGATTACCTGTAGCCGTTCCCT 306 36 100.0 30 .................................... ATAACCTCTTCTTGTTCATTGTCGAAGATT 372 36 100.0 30 .................................... TATTAATGTTCGTAATATCGCTTTTATCCG 438 36 100.0 30 .................................... CTTTTTCCATTCTTCGTTGGCTTGTTGTTG 504 36 100.0 30 .................................... GGTTACTTTATGAACGATATGACTGTTTGG 570 36 100.0 30 .................................... GGAAATCTGATCCTAATCTATCAACAGGCA 636 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTGTAGTTCCCTTTCTCATTTCGCAGTGCTACACT # Left flank : AGTGCTACACTGATAAAACCCGTCAATTTATTGCCAAAGTAG # Right flank : TAGGTAACGAAAAACCCCTTGAAATTCAAGGGGTTTTATTCGTTCTGCAATAAAAAATTTATTGAAAAAAGTTCTATTTTTATCACATAAATTATCTTTTTAGAAAAGAAGCATCTGATCTGAATTCACTTTTTTCTCCTGTAAGTTCAATTCACCTAGCAAAATATTCATAGCGGCAAATTGTTTTTCTGTTACCTCTAAACAACGAATATAACCCTCTTCTGGTAAATTCGCACATAATCTTTTATGATGTTTCTCTAAAGCATCTCTTCCCCTAATAATACGGCTATAAACAGATAGTTGTAACATCTGATAACCATCTTTTAACAAAAATTTTCTAAATTGATTAGCTGCTCTACGTTTAGCTACTGTCGTTACCGGCAAATCGAAAAAAACAATTAGACGCATAAATCTTCCCTCACTCATAATGATATTCCTTTATTGGTAGAATAACTGGTAGTTTTAACATATTAGGATTTTTTGCTAAAACAACTTGTTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTTTCTCATTTCGCAGTGCTACACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //