Array 1 37441-36640 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCFR01000014.1 Helcococcus ovis strain KG-37 NODE_14_length_46855_cov_37.692925, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 37440 36 100.0 29 .................................... GCTTTTATGGGATAAGGATAGCTCGAACA 37375 36 100.0 28 .................................... AGATGATACCAAAATTTAGAGCGTGGGA 37311 36 100.0 28 .................................... AGATGATACCAAAATTTAGAGCGTGGGA 37247 36 100.0 27 .................................... GTTTGACTTCTTCAACCGAATTGTCGC 37184 36 100.0 27 .................................... AAGTATTTTGAATATTGCCATATAGTC 37121 36 100.0 28 .................................... TGAAAAAAATATAGGTATTGCAACAGTT 37057 36 100.0 26 .................................... AATATAGGAGAAAATTTTGAAGAAAC 36995 36 100.0 28 .................................... GAAATCAAAGTGTATTTGCCAAACTTCG 36931 36 100.0 29 .................................... GACCGCTGTAAATGATTTTTACACACAAT 36866 36 100.0 28 .................................... ATTGATTTTTATACCCTAATCGACTAGC 36802 36 100.0 28 .................................... AGCTATAAGAGGAAGTTTGAAAACCGCA 36738 36 100.0 27 .................................... ATAATAACAGCCCAGTATCATTTGTAC 36675 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 13 36 100.0 28 ATCTACAATAGTAGAAATTATTATGTATTCTTAAAG # Left flank : GACAATAAGGATGAAGCGGTGGAGCATTTACTCCGATTTTAATTTTATCAATAGGAATAATTCTTTGGCCGTGTTCCCTGCATATTTTTGAAGTCCTTTTATCAAGTGTGGCTTCAAACTTTTTAGCAAGTATTCCACGTCTTTTACTATCATCTAATTCTGCTGTATTTACCACGTATGATGTTAATATTCAAGTTCATGTTGCTCTCGCATTTAATTCTAGTTTATCAGTCCACTTTCTATCGCATTTATTTTATATTTTTCAGATATTTCCTATCCTAATTTTCCCTTGTATACCTTAATCCATACAATACAAGACTTCTTCTGTTTTTTTTTTTAAACATTACCATTGTTAAAAACTTTAATATTTTTCTTGTTTAGATATAGATTTATCATTCAATTATTTCATTCGTTCGTCTATCTAAGATTTAACTCCTTGATTTTTTTACGATATTTTTATGTATTATTAAAGAAACAGGAATGGGAAGCGGCGACTTCAA # Right flank : AGCTAATGCATATATATTCAATAAAAGTGCTCTTATTGTCACTAAAGTTAGTATTGAAACGCATAAACTCTTATTTTTCGAATACATTTTTGAAATCCTTTAAGAATATTAAAAATTAAGTTATAGGTTTTACACTATTATTATATCATCATTTTCATGAATTGGATAGCCATAATTAATAATACTATCTTTATCTACTTTATATATCATTACACTATCAGATTCCTTAAATAATTTTTTGAATTTATTCTCAATATCCGATTTGACTAAGTTTAATATCCTCTCTGAATTTTTCACACAAAATATTGAATATTGTATTCTGTATCCATATTTACTTAAATATTTAGAGAATTTAGTTCTAACCTTATCATCTTTTATGTCATAGCTAACAAAAATCATAATTTACCTACTTATATTTATATATCGGAAATTTTGATATATCTTTATTTTTCATAAATGCTCTATAATAATTTTGTATATACAAAAACATTTCTTCTCTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAATAGTAGAAATTATTATGTATTCTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 23520-23352 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCFR01000006.1 Helcococcus ovis strain KG-37 NODE_6_length_78948_cov_76.506464, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23519 36 100.0 30 .................................... GACAATAAATGTATTTATAAGATAGAGGGT 23453 36 100.0 30 .................................... CAACAAGCAATAAGAATGATGGCGATAATG 23387 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTGAGTATGATGTAATTTCGTATAGGTATTAACC # Left flank : TTTTCATAATACTCTTTTATTTCTTGTACATTCTCATAAAATGTTTTTCATTCGAACTGTTAGTAAGAAAATTATTCTTAGCATATACACCTGGTATAGTAAAACTTAAGGTAAATATAAGCACACTTAAAAACATAGCTATTTTCTTTTTTAATTTTGTAATATTATTCTTCCTGTTTTTTTGTTTTTATACTTATATATTATGATACTTTATTATATATATCAACGTTTTCTTATTCACTATATAATTTAAAGTAAATACACCCTTATAGGATAGAGACTGAAGGTCGAAAATCCATAAGGGTGTATTTGTGCTATTGCAAAGAGCTAGTAAATAATATATACTTTATTTACTAAAAAAAAGGAGTTTAGGACTATGGCAAATGTATATTCAAGACAAACAAAAATATCAAATGTAGTTGGTAGAAGTGATTACATTTCAAATGAAAAAAGACAAGAGCATATAGTCTTACATTCCAAAAGTAGTGTCTTTGATTGGA # Right flank : TAATAAGATAACTAAAGGAGAAAGTCCGATAGAAATAGTAAAAGCAACTCACCCAGTTGTTTCGGAATTAACTACACAGGTAGTAATCAATAGTATTCCTGAAGAGGAACTATTAGAAATAAATGTAGAGGGGGGATGGTATGAAGTGCCAAAAAACGTGAAGATACAGGAATTAGCATTTGTATTGGCATCACACCTAGATGCCATATTGAGAATTAAGAGTGAGCGTATGAAAGAGAGTAGACAATTTACTACTGTAATGAATACATTAGTTAATAGGTAGTCTGAAATCTGGAGGCACCAAACAAAACAGAATGGATAGAAAATAACATAGAATATAAGAAGAGGATAAAATTATTATGTTTAATAAAATTGAAAGAAAACCAAAATGTGGAATTAGAAAATTAAAAGTAGGATTTGTGAGTTGCTTATTAGCATTTGGAATCTTAACAAGTGTAGGAAGTCCTTTAATAGGAAATACAGTAGTAGAGGCAAAAGCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTATGATGTAATTTCGTATAGGTATTAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 78374-75103 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCFR01000006.1 Helcococcus ovis strain KG-37 NODE_6_length_78948_cov_76.506464, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 78373 36 100.0 30 .................................... CGGTTAAAATTAGTGTTATTTATCTCTTCC 78307 36 100.0 30 .................................... CTATACACAATTCAGACAACAATACTCTTC 78241 36 100.0 30 .................................... AAAGACCCTATCATAAGCCAATAGCCCACC 78175 36 100.0 31 .................................... AATTTATAGGAGCACATTCAATCACCGCAAA 78108 36 100.0 30 .................................... CAGATTATTCCGGGGTGGAAAGACGCAACA 78042 36 100.0 30 .................................... GAGCTTAATCAAGTAACACGCACGGCGAGT 77976 36 100.0 30 .................................... CTTGTGGTATTAACAAGCTCTCTATTAGTA 77910 36 100.0 30 .................................... CTGTTGTAACACTTTCAATATGATACTTAG 77844 36 100.0 30 .................................... AAGGAGATTGGATAACAACTAAAAATTACC 77778 36 100.0 30 .................................... AAAACAAGTGCTTTATGGTATGCTTCATGG 77712 36 100.0 30 .................................... TTTGATTATGAAATTATGTGTGATAATCAT 77646 36 100.0 30 .................................... ATGAATATAGAAAATCCCCCTTCTTCCCAT 77580 36 100.0 30 .................................... AATCATTTCAGAAAATACTACAAGATCAAT 77514 36 100.0 30 .................................... TTGCCTCTTTATTTTTCAAACCTGCATTAA 77448 36 100.0 30 .................................... CTACAAAATCGCCTTCCAACTCTCCGTTGT 77382 36 100.0 30 .................................... TTTAATAAATTACAAAAGTGATTTTATTTT 77316 36 100.0 30 .................................... AGAGTCTATTAAATATTGTAGACATGACGT 77250 36 100.0 31 .................................... AATTTACTTTAATACTTGACGAATCTTCAAT 77183 36 100.0 30 .................................... TTATTATCTTGAACGTTCACATTACATAAG 77117 36 100.0 30 .................................... TAAAGAAAAATTTTTTACTACTGAATTGCT 77051 36 100.0 30 .................................... TTCACATTTTTCTCCTCTTTTAATTTCACT 76985 36 100.0 29 .................................... CGCAAAACAAAATATTGAAGGTGCATTAA 76920 36 100.0 30 .................................... AATTGAAAGGTAATTCTAAATGGTATTATG 76854 36 100.0 30 .................................... TTAGACCTAGCTACATCACGAATACTAGCT 76788 36 100.0 30 .................................... CAAGTTTTTGAAAAGTGGGTACAGATTTAT 76722 36 100.0 30 .................................... ATTTATCTGATGAAGAAATAGAAGAAGTTC 76656 36 100.0 30 .................................... TAGCTCCAATAAGCAAACTGCAAGAAATGC 76590 36 100.0 30 .................................... TCTTGATATTAGACCCAAGTCAATTTTTAT 76524 36 100.0 30 .................................... GATTAGCAGCATGAATTAATTCTTCCAACG 76458 36 100.0 30 .................................... ATATGATTGGATAGATGGTAAATTTCACGC 76392 36 100.0 30 .................................... AACGATGATACAAAGATATAACGCGACGTT 76326 36 100.0 30 .................................... AAAAAATGGGATTCTATGGGTAGCACAATT 76260 36 100.0 30 .................................... CTGTAAACGAGTTATTTCCTAAGCAACCTT 76194 36 100.0 30 .................................... TTAATTTTATATATTCCAATACTTCCTCCC 76128 36 100.0 30 .................................... TTAACACCAGAGGAAAGAAGAGAATATCAA 76062 36 100.0 30 .................................... TATTTGTGTCAACTATCTAAAAGATACGGC 75996 36 100.0 30 .................................... ATTAAGAAGTGGTGCAATTTTTAGAATGAT 75930 36 100.0 30 .................................... AAATGACTAAAAAGATAAAAATGGAAGAAG 75864 36 100.0 30 .................................... AGGTTATTGCTTTTTCAGAAGAAATGAGTT 75798 36 100.0 30 .................................... TATTGATAGTTATCTTCGTTAAGCGTTATG 75732 36 100.0 30 .................................... CTAAAGGCTGCGTTCTATTGCTCATCCCGC 75666 36 100.0 30 .................................... TATCGGCATTTGGTGTTAACTTAATTACCA 75600 36 100.0 30 .................................... TTTGATACACAAGTAAATGGCGGAATTATA 75534 36 100.0 30 .................................... TGCAAGTTCTTTCTAAATTCATACTAGTTG 75468 36 100.0 30 .................................... TATCAAGTGCATGGTATAGCTTGTGACTTA 75402 36 100.0 30 .................................... TATTGATAGTTATCTTCGTTAAGCGTTATG 75336 36 100.0 30 .................................... CATATATAGGATACGCTGCGGCAGGGAGTG 75270 36 100.0 30 .................................... GAATCGGGCATGAAATTTGGAGATGGCATA 75204 36 100.0 30 .................................... TATTATCCATATTGATCTCACTTTCTTCTA 75138 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 50 36 100.0 30 GTTTGAGTATGATGTAATTTCGTATAGGTATTAAAC # Left flank : AAAATAATTAATAAAATAATTAAAGATTTATTTTTATTATCAAAAAGTGAAATATTTTTAGATAAATACTATCAAAATAATATAATGTTAAAAAACTTTATTTCAGATTTGATATTTGAATATGAAATACCATTGGAAATAGATGATGAAGTAGATTTTACATATATATTAAAATCTTTTGGAATCAAAATAAATAATGAATATAGTTCATATATTGAAAATTTGATTAATTATTTAAAATTGTATTTAGAAGTTTTTGGAGTAGATATTTTTATATTTATAAATTTAACACAATTTTTGAGTAATGAAGAGTTTAATCTATTATTTGATTTTATAATGAAAAATAATATTTTGATTATAAATTATGATAAGATATATATGAATAATAAAATTATAAAAAATCAAATTTTATTTGATAATGATTTGTGTAGAATTTTATAATTTATACCATATATGAGATTACCACTTGTGATGGAGTCGATACCACTCATGGATTTGAG # Right flank : GAATCGGGCATGAAATTTGGAGATGGCATAGTTTGAGTATGATGGGCTTGAGATATAATAGGGATACAGAGAAAAAAGCTTGATAATTCGGGGCTTTCAGCACTGTATCCCTATTTTAAGAATCATAGAAATATAATAAAATATTGTAAAAGGAGGATTCTATGAGAGCAAAAAATATTTCAAGTCAATATATAATTCCTTCTGCTTACAAAGAAGGTGAGAATAAATGAGGTGGGTAATAAAAATAATATTGTTTCCATTCAGCTTTCTACTTAGTGTCCTTACTGCCTTTCTGACATTTATACTTGGCATAGGAACAACTATTCTGTATTTCTTAATGCTGATGTGTATCGTTGCAGCAATAGGATCATTTATGCAAAAAGATATATCACTTGGCATTGAGGCGTTGGTATTAGGATTTTTGTTAAGTCCTTATGGAATACCGATGGTTGGAGCAGCAGTTATAGCATTTCTTCAAGGAATCAATGAAGCAATAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTATGATGTAATTTCGTATAGGTATTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //