Array 1 9849-9382 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAI01000115.1 Fischerella thermalis WC245 NODE_1057_length_11022_cov_81.231171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 9848 28 100.0 46 ............................ ACATTTCACGCCTTTTCCAGGATATTCACATTCTGTCGTTTCAATC 9774 28 100.0 46 ............................ GCAAGGATACATCTTATGTCGCGATCGCTGACAAGGCGTTTCAATC 9700 28 100.0 44 ............................ CTACGGCGCTAGCAGCGGCGATCGCGGCATTCCTCGTTTCAATC 9628 28 100.0 45 ............................ TCGCGGAACAGGCAATAAGCCACGGCTAGAAGCCCGGTTTCAATC 9555 28 100.0 46 ............................ TCCGGGCTTGGGTGTGGTGCCCATGGCTGCCCAAGAANNNNNNNNN 9481 28 96.4 44 N........................... TCATTGGAGTCTCCAAAAAGACTTTTTAAATCATCGTTTCAATC 9409 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================== ================== 7 28 99.5 45 CCTAATAGGGATTAATTTAAGTTGCAAC # Left flank : AGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACTCAATGATGCCTGGAATGGGCTGATAAGGCTGATAGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACCGGCGGATCTACCGATTCTGGGGTTGGACATCCCGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACGATATGCGATCGCCGCGATCGCCAAATAGCCNNNNNNNNNNTAATAGGGATTAATTTAAGTTGCAACGTGCGTATTCGCTCGGGCGATCGCTAGCTCTAGAAAGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACCCAAATCCGCTGGGGTCGATGCCGAGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATAGGGATTAATTTAAGTTGCAACTCCGAGGGGATTTCCAACTCACGACTCGGAGCNNNNNNNNNN # Right flank : TGCTCAATTCAGAAGCCTTGCTGTATTTGGTTTTCAAGGTTCAGTGGTGCAGACCTAGATTAAATATAGCGTTTGAGCGATCGCACTGTCAAGAGCAAACGAGTATAAAATGGCTCAAATCTAGTCAGGGTAAGATTTACAGAAAAGGTGCAGACCTCATTTGCCATCAAATCAGTCTCTAACTTAGACAGAATCAGCATTTCAGCCCCAAAAATTGATTGCTTTTTTTCTACACCTACTGGTTTGCACCATCATCAAGCAAAAAACACCGTAGTATCCATTGGCATTTCGCCACCAATGCGCTCAATTTTACCCTGACAGCAAGCACAAAGAAAATAGAAGCGGATGCTGTCTTCATCAGGTTTAATGAGTTTTGCTAGCCGCGACCTCAATTTAGCATACTGAGTTTCAGTTAGGTTGCACTCAAATACAGAATACTGCATCCACTGTCCATAAGACTTGAGAATATTGTGGATTTTGGTACGACGTTTATCTTCGGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTAATAGGGATTAATTTAAGTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 10028-10928 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAI01000115.1 Fischerella thermalis WC245 NODE_1057_length_11022_cov_81.231171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 10028 37 100.0 36 ..................................... TTTCTAGAGCTAGCGATCGCCCGAGCGAATACGCAC 10101 37 70.3 30 ..........................NNNNNNNNNNG GCTATTTGGCGATCGCGGCGATCGCATATC 10168 37 100.0 34 ..................................... GGGATGTCCAACCCCAGAATCGGTAGATCCGCCG 10239 37 100.0 35 ..................................... TATCAGCCTTATCAGCCCATTCCAGGCATCATTGA 10311 37 100.0 34 ..................................... TTCCCCGCCAAGGCGATCGCTTGCAGTTGCTGGA 10382 37 100.0 40 ..................................... TCCCGGAGACCCACGAAAATGAGACAACTCATGATGGCAA 10459 37 70.3 30 ..........................NNNNNNNNNNA GGACATACCTTACCTGCCCTCTATAGCTTT 10526 37 100.0 34 ..................................... CTGCCCATGCAGTAGGATGCCAGCCATGCGGAAG 10597 37 100.0 35 ..................................... CGGTACATGGTGAATGGGGCAAGCAAGCTCGCCCA 10669 37 100.0 37 ..................................... TGAAAAACCCACCGACGAAAGTATCCACTCTGGCGAA 10743 37 100.0 34 ..................................... TCGGCGGTGATGGGTGAGCCTTCCGCGGCTTGCC 10814 37 100.0 41 ..................................... GGCACGCCTCCGATCGTGGTGAGGACATCTCCATTGTTCCC 10892 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 95.4 35 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGGGCTTCTAGCCGTGGCTTATTGCCTGTTCCGCGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGAGGAATGCCGCGATCGCCGCTGCTAGCGCCGTAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCCTTGTCAGCGATCGCGACATAAGATGTATCCTTGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGACAGAATGTGAATATCCTGGAAAAGGCGTGAAATGTGTTGCAACTTAAATTAATCCCTATTAGGNNNNNNNNNNGCTCCGAGTCGTGAGTTGGAAATCCCCTCGGAGTTGCAACTTAAATTAATCCCTATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATCTCGGCATCGACCCCAGCGGATTTGG # Right flank : TAGGATTTGCTCTCCGCTCATGCCATCTCTAGGAGTTGCAACTTAAATTAATCCCTATTANNNNNNNNNNCAGTGGTCTGATGTGGATCGCCACGCGTTGCAACTTAAATTAATCCCTATTAGG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 8717-8458 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAI01000109.1 Fischerella thermalis WC245 NODE_724_length_95323_cov_81.190414, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 8716 37 100.0 34 ..................................... ATAGCGTGACGACACGCTATAAAGATGCCCTTTA 8645 37 100.0 43 ..................................... TACTTCCATCCAATCAAAATATTGCACTTTTCTTATAAGCCAG 8565 37 100.0 34 ..................................... CCGGATCCTGAGCCTGGGGATTGCGCGATCGCAG 8494 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 4 37 100.0 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : AAGCCGGATGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGGACTGGCAGGTACGGTGATTGGTTCGGTATGCTANNNNNNNNNNAATTAATCCCTATTAGGGATTGAAACGCGCAATGATAGAAGTTAACCGAATTATCTNNNNNNNNNNAATTAATCCCTATTAGGGATTGAAACTTCATATAAGGGCAAGCTTGGAGACGTGATAGTAGTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGAGTGCGAAAGTAAAAGAAATAAAGAAGAAATAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAATCTCAGCAATGGAGTGGGGACATCGACTCCAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAAGCTTCTAATTCATGCGGAAGTATAGGGGANNNNNNNNNNTTAATCCCTATTAGGGATTGAAACCTACTGCATTGTATTTTTCTTTGTTAGTTGTACT # Right flank : TCTGTTATGGGCGATCGCGCTTCCAATTATTCNNNNNNNNNNNNNNNNNATTAATCCCTATTAGGGATTGAAACGAATTGTGATCAGATCGAGATACTCCTCGATNNNNNNNNNNATTAATCCCTATTAGGGATTGAAACTTTTTATTAACGAAGGACGTCTTGTTCGCAACCATATTAAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTCGAGTTTACTTGCCACCGCAGTTACGTTTTTTTGTTGCAACTTAAATTAATCCCTATTGGCGTTGCTGAATTTGGTCATGAATTATGTGTGCATACATTTTTGTAGTTCGATGCCAAATCATTGTAAGACGTAGCAATGCTACGTCTCTACGTCTGGTCATACCCGTGAATTGTAAATTCATATCTTGATTCAGCAACGCTAAATAAATCCTTATTAGGGATTGAAACTTAATTGCAATAATGTTTGAGATATAGGATTCCCAAATCATCCGTAAGAGAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 2 10313-9569 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAI01000109.1 Fischerella thermalis WC245 NODE_724_length_95323_cov_81.190414, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 10312 37 100.0 41 ..................................... TAGTGAAATTGTCCCAGAGACCGTCTGGTAGGTAATCCATC 10234 37 100.0 33 ..................................... AATTTGATCTTAATAAAGTGGTTTTTCCTTTTC 10164 37 100.0 33 ..................................... GATTCAGTAATATCGACTCCTGCCAACCAGCAA 10094 37 100.0 28 ..................................... CAGCTGGGACTCGACTTGGATTGGACGG 10029 37 64.9 34 AGANNNNNNNNNN........................ TACCCAACCACTGGCACAGTGACCTCTTTGTTTG 9958 37 100.0 33 ..................................... CAATGCATAAACACTGTATACATAAGCCAAATC 9888 37 70.3 31 ANNNNNNNNNN.......................... CCCAGCACTGAAAGCCAAGGCATAAACTGCC 9820 37 73.0 35 .NNNNNNNNNN.......................... GGCATCATTATTAGAGGCGGGGAGCAGAGAAGAAG 9748 37 100.0 35 ..................................... GAAGAGATGTAGGAGCGTACGAGATTCCCACGCTC 9676 37 100.0 34 ..................................... CGAGCAGAGCGATCGCCGACCCGGATCTCAATCG 9605 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 11 37 91.7 34 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CGTTNNNNNNNNNNTAAATTAATCCCTATTAGGGATTGAAACCCTTAATATGGTTCTAAGCCGCGTTTAATTTTTCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTAATCCCTATTAGGGATTGAAACATCTATGGCATTAGTAGAACCACCGTACAACNNNNNNNNNNAATTAATCCCTATTAGGGATTGAAACGGATCTCCCCTATGGCACTCTCGAAGGAGANNNNNNNNNNAATTAATCCCTATTAGGGATTGAAACGGGAAGTACAACTTGGGAAAGGATAACCATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATCCCTATTAGGGATTGAAACTACCCAGAAATATCGCGATCGCGCCAACAAATAAA # Right flank : GAACGCAAAATCGCCAAAGAGTACAAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAATCCCTATTAGGGATTGAAACGGAGATTTTCGGGATCCTGCGCAATCCCGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAATCCCTATTAGGGATTGAAACGACATCTACTGTGGGTAGATCTTCCAAGCCGGATGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGGACTGGCAGGTACGGTGATTGGTTCGGTATGCTANNNNNNNNNNAATTAATCCCTATTAGGGATTGAAACGCGCAATGATAGAAGTTAACCGAATTATC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:0, 3:3, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 3 11045-10771 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAI01000109.1 Fischerella thermalis WC245 NODE_724_length_95323_cov_81.190414, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =============================================================================== ================== 11044 26 100.0 48 .......................... CCGGCATTTCGATTTATGATCCTAAGATCGATGCTCCGTTGCAACTTA 10970 26 100.0 79 .......................... AACAAGATCGGCGGAATTCCCCTTCCTCAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA 10865 26 100.0 43 .......................... ATTCTCCCAGAGTAATTAAACCAACTTCGTTNNNNNNNNNNTA 10796 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =============================================================================== ================== 4 26 100.0 57 AATTAATCCCTATTAGGGATTGAAAC # Left flank : CTTAAATTAATCCCTATTAGGGATTGAAACGGTAAACGCGATCGCGACATCGAAATAACCATANNNNNNNNNNATTAATCCCTATTAGGGATTGAAACGCCTTTCGCCCAGTGCCAAGCGACACCGGCAAGAATGCGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTCTTCTTCCATTGCTATCATTTCTCAAATTTCTNNNNNNNNNNATTAATCCCTATTAGGGATTGAAACAAATAAGCAAGAGTTTCAAATGCTTCTTGTCTAGCAGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGAGCAGAGCGATCGCCGACCCGGATCTCAATCGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTAAGAATGGGAATTTCTCTGTACTCTCGAAGTACCACNNNNNNNNNNTAATAGGGATTAATTTAAGTTGCAACTCCTTTTAGGGTTCTGTTTTTAGAATTTNNNNNNNNNN # Right flank : CCTTAATATGGTTCTAAGCCGCGTTTAATTTTTCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTAATCCCTATTAGGGATTGAAACATCTATGGCATTAGTAGAACCACCGTACAACNNNNNNNNNNAATTAATCCCTATTAGGGATTGAAACGGATCTCCCCTATGGCACTCTCGAAGGAGANNNNNNNNNNAATTAATCCCTATTAGGGATTGAAACGGGAAGTACAACTTGGGAAAGGATAACCATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATCCCTATTAGGGATTGAAACTACCCAGAAATATCGCGATCGCGCCAACAAATAAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTAGTG # Questionable array : NO Score: 7.31 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-1.54, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 4 11613-11156 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAI01000109.1 Fischerella thermalis WC245 NODE_724_length_95323_cov_81.190414, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================================== ================== 11612 25 100.0 48 ......................... GGGATTTACTATAGATTGATTGATTTGCAGGAGATCGTTGCAACTTAA 11539 25 100.0 43 ......................... GGTAAACGCGATCGCGACATCGAAATAACCATANNNNNNNNNN 11471 25 100.0 51 ......................... GCCTTTCGCCCAGTGCCAAGCGACACCGGCAAGAATGCGGTTGCAACTTAA 11395 25 100.0 43 ......................... TCTTCTTCCATTGCTATCATTTCTCAAATTTCTNNNNNNNNNN 11327 25 100.0 51 ......................... AAATAAGCAAGAGTTTCAAATGCTTCTTGTCTAGCAGGAGTTGCAACTTAA 11251 25 100.0 46 ......................... CGAGCAGAGCGATCGCCGACCCGGATCTCAATCGGTTGCAACTTAA 11180 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =================================================== ================== 7 25 100.0 47 ATTAATCCCTATTAGGGATTGAAAC # Left flank : AGTAATAGGAATTGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTGTTCAATCTCCGGTGGCAAAGATAGTCTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAATCCCTATTAGGGATTGAAACTGAATATCTATTCTCTGGGAAGCTGGATTTGGATGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAATAATAATGAACTTAGGAGAGATAAAACACTTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTGAATTTCTGGTTGTGCATCATCGTGGCANNNNNNNNNNTAAATTAATCCCTATTAGGGATTGAAACGTTTTCTCCCAAGGACGAACTTTGAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TAAGAATGGGAATTTCTCTGTACTCTCGAAGTACCACNNNNNNNNNNTAATAGGGATTAATTTAAGTTGCAACTCCTTTTAGGGTTCTGTTTTTAGAATTTNNNNNNNNNNAATTAATCCCTATTAGGGATTGAAACCCGGCATTTCGATTTATGATCCTAAGATCGATGCTCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAACAAGATCGGCGGAATTCCCCTTCCTCAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTAATCCCTATTAGGGATTGAAACATTCTCCCAGAGTAATTAAACCAACTTCGTTNNNNNNNNNNTAAATTAATCCCTATTAGGGATTGAAACCCTTAATATGGTTCTAAGCCGCGTTTAATTTTTCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.30,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 5 13590-11821 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAI01000109.1 Fischerella thermalis WC245 NODE_724_length_95323_cov_81.190414, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================================= ================== 13589 35 100.0 36 ................................... ATCACGTTTAACCCTCGGCTCCCCAGTGGAGCCAGT 13518 35 100.0 37 ................................... TTTATCCGCCCCGGTTCATTGCGCATCCGGTGGATGT 13446 35 100.0 35 ................................... CTCTTTGATCGGAGAAATAGCGGTGGAGGCGATCN 13376 35 74.3 36 NNNNNNNNN.......................... CTGCTCGCCTACATCGAGCATATGGAATCCGAGGGT 13305 35 100.0 37 ................................... CGCGGCATCTTCGCGGACGAAGCCGCCTTCTACGNNN 13233 35 80.0 39 NNNNNNN............................ GTGGTCGAATACGCCAACCGCAGAGGTGCATTGATGNNN 13159 35 80.0 40 NNNNNNN............................ GCTGCTGGCTGGCTGGTCGCTGCTGGCTGGCTGGTCGCGT 13084 35 100.0 39 ................................... TTACTAACTTATTTAATAAACAAAAAATTAGCGAGATAN 13010 35 74.3 31 NNNNNNNNN.......................... CCAGGGGACTCATTGCTATTTGAGCCCCCTN 12944 35 74.3 33 NNNNNNNNN.......................... CCAGCGCCAGATAGCGGCAGGATCGATCTTGTG 12876 35 71.4 35 NNNNNNNNNN......................... GGAGAATAGTACACAGGACTTCCACTATATATNNN 12806 35 80.0 36 NNNNNNN............................ AGGTGGCAGAAAGGGCAACCTATCCGTATATACAGT 12735 35 100.0 36 ................................... TAAATTGTGGCACTGAACACGACCGAGATGTGAAGT 12664 35 100.0 43 ................................... GAGGCGAGAGCGCAGGCATGAGAAGTCAGGAAGAAGATGAAGT 12586 35 100.0 34 ................................... AGCCCAATCCGGCACGCAATCCACCTCAGCAGGT 12517 35 100.0 33 ................................... CGCGGAGCAGGAGTATATTCAATGGCAGCGTNN 12449 35 77.1 37 NNNNNNNN........................... CCAAGCCCATCTCTCGGCTCTCTCTCCATCGAGAGGT 12377 35 100.0 34 ................................... GATTCTATCTCCGTAGCTGCCGACGCAATGCTCN 12308 35 74.3 38 NNNNNNNNN.......................... AATCAATCACAAAACCGGAGTATGTAGATGCGATCAGT 12235 35 100.0 34 ................................... TAAGCCCGAACCAGATGAATTGGGCGAGTTGCGT 12166 35 100.0 36 ................................... CAACGATTTCATTGATTCTAGTAATAGGAATTGCGT 12095 35 100.0 61 ................................... CTGTTCAATCTCCGGTGGCAAAGATAGTCTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNN 11999 35 74.3 39 NNNNNNNNN.......................... TGAATATCTATTCTCTGGGAAGCTGGATTTGGATGGAGT 11925 35 100.0 35 ................................... AATAATAATGAACTTAGGAGAGATAAAACACTTGT 11855 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================================= ================== 25 35 90.4 37 TGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCAAAAATTAACAAGGCGACGATCGCGATTACCCCTACTTCTGTCCATCCCAGTCCAAACATAAGTGTCTCCCGTGAAAAACTCTACTTAAAATATAGTAGGGTGGGGATGTATGGATGATGTTGTGATTTTATTTGGGGTGTGTGGTTGAGTATCTTTTTTGAACCACAAAGCCACAAAGACACAAAGAAAAATCGATTTTGAAGTCCTAGTGTTATGGCGATCGCCCTAGGCTACTTAGGCTTGATTGGTGCAAACCTGTAGGTGTTTTTTGGAGCAGGTGAATTTTAATCGCTGGAAGCCCTACCAGTTCTGCTTTTGAATGCTTCTAAGTCCAAAAGGGGTTTGCACCAATTGTGAAATGCTTGCCAGACAAGGTTTTGAGCCTATTTTTTCTTCTCCGCCCTTGACATTCCGATGGCTGAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCAGT # Right flank : TTGAATTTCTGGTTGTGCATCATCGTGGCANNNNNNNNNNTAAATTAATCCCTATTAGGGATTGAAACGTTTTCTCCCAAGGACGAACTTTGAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAATCCCTATTAGGGATTGAAACGGGATTTACTATAGATTGATTGATTTGCAGGAGATCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGTAAACGCGATCGCGACATCGAAATAACCATANNNNNNNNNNATTAATCCCTATTAGGGATTGAAACGCCTTTCGCCCAGTGCCAAGCGACACCGGCAAGAATGCGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTCTTCTTCCATTGCTATCATTTCTCAAATTTCTNNNNNNNNNNATTAATC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:0, 3:3, 4:0.52, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 31291-29662 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAI01000116.1 Fischerella thermalis WC245 NODE_1382_length_52855_cov_79.453712, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================================== ================== 31290 35 100.0 37 ................................... GCTTTATTACCTCTTGGAGCTATGCTCACTTTGNNNN 31218 35 82.9 32 NNNNNN............................. CCAGAGATGGTGGATAAATGTGCATTAGGNNN 31151 35 80.0 43 NNNNNNN............................ ATCGAGAGAGGAAAAAGAAGAGTTAATAACCAACCATGTTAGT 31073 35 100.0 38 ................................... ATTCGAGGTATATGAAATTACTCAGCGCGATACTACGT 31000 35 100.0 34 ................................... TCATCTGTGCCGAGTGATTCGCTCACTCACTNNN 30931 35 80.0 36 NNNNNNN............................ CTCATGGGGTACATAGACGGTGACCCTCATAACGGT 30860 35 100.0 33 ................................... TAGTAGTCCCACTGACCAAAGCCACTGTGANNN 30792 35 80.0 35 NNNNNNN............................ CTTCTCGAATGCACTTGTACTCAAGAAAATTCNNN 30722 35 74.3 40 NNNNNNNNN.......................... GATGCGATCAACAGCACAAATTATTGCTGATTCTTTGAGT 30647 35 100.0 37 ................................... GCCCTGTCTGTAGCTACAGCTGCTACCGTCTCCANNN 30575 35 80.0 35 NNNNNNN............................ GCAGAAGCTCAATGCGAGAGACTTACTGACTCTGT 30505 35 100.0 38 ................................... ATTCGAGGTATATGAAATTACTCAGCGCGATACTACGT 30432 35 100.0 37 ................................... GGTTTTGCCCCACAGCAGTGGCTCTGACCGCCAAGGT 30360 35 100.0 41 ................................... GGAGATGGAGAAAAATCAGAAGGATCGAGATTAGAAAGAGT 30284 35 100.0 53 ................................... ACGCTGGCCCAACGAGCCTCGTTCCTCCCGACGTCNNNNNNNNNNNNNNNNNN 30196 35 77.1 38 NNNNNNNN........................... GATCAAAGACTTTTAGCCTCGCCACCTCGAATGGACGT 30123 35 100.0 36 ................................... GACCTTGATGCAGTACTGTATCCGAGCTATGGAGNN 30052 35 77.1 38 NNNNNNNN........................... GCCATATTTTGCGATCGCCTTCATTACAGATCGCTTGT 29979 35 100.0 36 ................................... TGCTGGTTGGCAGGAGTCGATAGTGTTGAATCGAGT 29908 35 100.0 34 ................................... CTGATATTTTTCTCTGCGCTTGGGCTTGCGCGGT 29839 35 100.0 36 ................................... CAGGAAAGCAAAACCGCCCCCAAAGCTGTTGGGGGT 29768 35 100.0 37 ................................... GACACTATACATATCGCCACGTAGCCTAGGGAACCGT 29696 35 97.1 0 ..................................G | ========== ====== ====== ====== =================================== ===================================================== ================== 23 35 92.5 38 TGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATCCCTATCAGGGATTGAAACCAGGATTAGTTACAGCATCGAAAAACTGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTAAAATCCCTATCAGGGATTGAAACTTGATATATCTTGTAGCGAGAATTGATTTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTAAAATCCCTATCAGGGATTGAAACGTTGACTGGCAATTTTGAGTTTCCTTTTAATANNNNNNNNNNACTAAAATCCCTATCAGGGATTGAAACTTAAAACCCGTTTGCCGTCCTCTGTTGTTATGAGT # Right flank : TGGTGAGATTTACGTATAGCACTTTAAAATTAGGAGACTAAAAAAACCAAACTTATACGCAAAACCTTACTTAAATCTATAATTTAAAAATAAAATCAGCGATCGCCACCTCATCTTTACCTGTTATAGCTTCTTGGGGAGGACTCAGTAAAACAGATCGCTGCATTAATTTCTGACTTTCAAGACGACGTTCAACCCGGCTAGGAATTCCGTAACCGTAAACAATATGTCCTTGTCCAGCCAATACTGCGACTTGATAATCTGGATTAGCTTTGACAAACTTTGCAATTCCTTCTGCCATTGTTTCATCCCATAACACTTGCGCCAAAAAAAAGCGTTCAGCACCAGAACTATTACCGTGTCCAGCATTTTGATGCTGTTGAAAAGCTTGTAGTGATAACTGTTGATACTTTTGGTTATCAGTACGAATTTCTGAAAAAGGCGGAATAAATTTCCTTTCGGATGCAGTGAGACTTTCTAGACCTTGACGTGCAACTTTG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [17-36] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 32457-31842 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAI01000116.1 Fischerella thermalis WC245 NODE_1382_length_52855_cov_79.453712, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 32456 35 100.0 41 ................................... ACCTTCTCCCGGCGACTCTTTCATGTGGGTCTCCGGGAGGT 32380 35 100.0 34 ................................... TGATGCCGCGATCGCGACACCACTTCTCCAATTN 32311 35 74.3 43 NNNNNNNNN.......................... AGCCTTCCCGGATACTCCGAAGAGGGACTGGGCTACGTCCTTG 32233 35 71.4 35 NNNNNNNNNN......................... GCTCTCCCCGACTCGCTCTCGCCCAAAATAATNNN 32163 35 80.0 35 NNNNNNN............................ TCGCTGCTAAACAAGCGATCGCTGGCAAANNNNNN 32093 35 80.0 37 NNNNNNN............................ TTCCAAATTTATCCCGTGAATTTTTTCTAGGGATGGT 32021 35 100.0 36 ................................... TTTGACATATACCCTAGGAGGGAATATCCTATAAGT 31950 35 100.0 39 ................................... AACAGACCACTATCCAGCTTCCATTGGGCTACCCCAGGT 31876 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 9 35 89.5 38 TGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : CTAAAATCCCTATCAGGGATTGAAACACGCAATGGCACAAATACTACTACGCCGACTCCGANNNNNNNNNNACTAAAATCCCTATCAGGGATTGAAACTACAGCATATATCGATGGGAGCGATCGCGATCNNNNNNNNNNACTAAAATCCCTATCAGGGATTGAAACGACGACGAGAGAAAGCTCCGAGTTATTGCTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTAAAATCCCTATCAGGGATTGAAACGTGTGATTCGAGGCAGCGACTGCCTGGAACTNNNNNNNNNNCTAAAATCCCTATCAGGGATTGAAACGCTTATATCTTCTGGCGCTGCCGTGCCACCNNNNNNNNNNACTAAAATCCCTATCAGGGATTGAAACGGTATTGCCTCGATTTTCCACGGGAGGGGTCATTGGCAGAGGT # Right flank : AGCCATGTGATCTTATCTGGATGCTCCGGAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATCCCTATCAGGGATTGAAACCAGGATTAGTTACAGCATCGAAAAACTGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTAAAATCCCTATCAGGGATTGAAACTTGATATATCTTGTAGCGAGAATTGATTTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTAAAATCCCTATCAGGGATTGAAACGTTGACTGGCAATTTTGAGTTTCCTTTTAATANNNNNNNNNNACTAAAATCCC # Questionable array : NO Score: 8.73 # Score Detail : 1:0, 2:3, 3:3, 4:0.47, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NNNNNNNAACTAAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 3 33587-32790 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAI01000116.1 Fischerella thermalis WC245 NODE_1382_length_52855_cov_79.453712, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =============================================== ================== 33586 26 100.0 44 .......................... GTAGACCGCAGGGCGCAGGAGTTCCTCGAAGANNNNNNNNNNAA 33516 26 100.0 43 .......................... TCCTGACTGTGGGAACCGATCCTATCTCCTGCGTTGAAATCAA 33447 26 100.0 47 .......................... TTATTTGCATATGTCGCTCCATATCGGATATATATAGTTGAAATCAA 33374 26 100.0 42 .......................... TGGAACTTTTCCCATAAACCCTGTTCGACACGNNNNNNNNNN 33306 26 100.0 44 .......................... GATGTCGATGATTTCGATGTCTGCGAGTGTCTCCGNNNNNNNNN 33236 26 96.2 46 N......................... GCTCTTCTCCTTACACCACAAGGGTTTTCCGCCTNNNNNNNNNNAA 33164 26 100.0 45 .......................... CTACTGGGGAGACTAAATCGAAGTTGAACGAGGTGTTGAAATCAA 33093 26 100.0 45 .......................... TTGCGATCAGCGCGGATCAAGCGATCGCCGACCANNNNNNNNNNA 33022 26 100.0 40 .......................... GTACCGCCGATAAATCCTCCGACAAGGGCANNNNNNNNNN 32956 26 100.0 46 .......................... ACGCAATGGCACAAATACTACTACGCCGACTCCGANNNNNNNNNNA 32884 26 100.0 43 .......................... TACAGCATATATCGATGGGAGCGATCGCGATCNNNNNNNNNNA 32815 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =============================================== ================== 12 26 99.7 44 CTAAAATCCCTATCAGGGATTGAAAC # Left flank : GGAAGCAACGCCAAAAGTCTGGGATCTAGCCGCTGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTGCTTTATCTGCTGGTGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTGGAAAATTTAAAGATTTGAACTTTGGCGTTCTCCAAGTTGCTTGGTTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTAACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAAGAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTAAGTTTGTANNNNNNNNNNA # Right flank : GACGACGAGAGAAAGCTCCGAGTTATTGCTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTAAAATCCCTATCAGGGATTGAAACGTGTGATTCGAGGCAGCGACTGCCTGGAACTNNNNNNNNNNCTAAAATCCCTATCAGGGATTGAAACGCTTATATCTTCTGGCGCTGCCGTGCCACCNNNNNNNNNNACTAAAATCCCTATCAGGGATTGAAACGGTATTGCCTCGATTTTCCACGGGAGGGGTCATTGGCAGAGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACACCTTCTCCCGGCGACTCTTTCATGTGGGTCTCCGGGAGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTGATGCCGCGATCGCGACACCACTTCTCCAATTNNNNNNNNNNCTAAAATCCCTAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 5862-2889 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAI01000117.1 Fischerella thermalis WC245 NODE_1516_length_8977_cov_66.646431, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================================================== ================== 5861 35 100.0 34 ................................... CATTGCGTGTACATTCCTGTAAAGCTGGGCAAGT 5792 35 97.1 37 ...............................T... TATACGTTTTATGGCGATCGCTGGTGATATACTGNNN 5720 35 80.0 32 NNNNNNN............................ ACCATCCTACGGTTAAGGACTCGCATCTGANN 5653 35 77.1 33 NNNNNNNN........................... CTTTCCAGGAATTCCGATACATGGCGATATCNN 5585 35 77.1 37 NNNNNNNN........................... CCTAGCCCATTTCTGCCCCAGGTTTTCGGCACCCCGT 5513 35 100.0 38 ................................... ATATTGCCGTGCTGCGAACATTCGCTACCTCTTGATGT 5440 35 100.0 36 ................................... ATCGGCGGCGGATTCTTCCCGGTGTGGACGCGGGGT 5369 35 100.0 32 ................................... TGTTCCGGACTTAACGACCGATAAAAGTCCAG 5302 35 71.4 35 NNNNNNNNNN......................... CCAATGCTCAATGATGCATATAAGGCGGGCATNNN 5232 35 80.0 44 NNNNNNN............................ CTCGGGCATCATCACAACAGCTACAGGAAATTTTACCTAGTAGT 5153 35 100.0 32 ................................... TACCCCCCCAATTTGATAGGTTCCCTGCGNNN 5086 35 80.0 38 NNNNNNN............................ CGGGTGGGCGGCGCGGTCGCGTACACTATCGAGTTCGT 5013 35 100.0 37 ................................... GTCTCGCGATCGCCACCTCGAAAGCTCCATCTGATGT 4941 35 100.0 42 ................................... TCTGATCTGGGGCGGTATTCTGTGGAGCCANNNNNNNNNNNN 4864 35 77.1 32 NNNNNNNN........................... ACACCTCTACAAAATCAGTACAAAGCAATCCN 4797 35 74.3 31 NNNNNNNNN.......................... CAGAATGGTACGACTACTTTTCTCCTGAGNN 4731 35 77.1 61 NNNNNNNN........................... CTTGAATACACCAGCTAGATGTTGTCCAAATGCAGTACCNNNNNNNNNNNNNNNNNNNNNN 4635 35 80.0 34 NNNNNNN............................ GACAGCTTTACGAAGCCTTCTCCGATAGGCGGAN 4566 35 74.3 35 NNNNNNNNN.......................... ATGGGCTGTCCGGGCACCGCGTCGTCCGCGATCCN 4496 35 74.3 34 NNNNNNNNN.......................... TCGCATCCGATACAGTCCCTGAATTCCTTCGGGT 4427 35 100.0 32 ................................... CGTACTCCTTATCCTCCGAATAATCGACGAAT 4360 35 71.4 41 NNNNNNNNNN......................... TCGCGTTCGCTTCCGGCACCCATGGGAAGATCGTTGGCTGN 4284 35 74.3 31 NNNNNNNNN.......................... CAGACATTCAATGTATCTGCAAGTCTGCANN 4218 35 77.1 67 NNNNNNNN........................... TCAACCAGAAATCGATGCCATCAAAAATAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 4116 35 77.1 34 NNNNNNNN........................... AGCGCTCTCTATCAACACAGCACTTGCAAACTNN 4047 35 77.1 32 NNNNNNNN........................... GCGCTGGCAAGTGACAAATGGCTAGCATTGCT 3980 35 71.4 34 NNNNNNNNNN......................... TCGCGGTCGCCAAAGCACCAGCCCATGACGTNNN 3911 35 80.0 48 NNNNNNN............................ GTGCTGGTCGGGCTGGTTCGGGCATTTACCAAGANNNNNNNNNNNNNN 3828 35 77.1 40 NNNNNNNN........................... TCCTCGATCCTGGCTGCTTCTCGCAGAGTACGCCACANNN 3753 35 80.0 41 NNNNNNN............................ GCCAGAGAGAATCTTCGAGGAGAGTTCCCGCGATCGCTTGT 3677 35 100.0 37 ................................... TCCAGTCCATTAAGCGATCGCACGAAGCAGCACAANN 3605 35 77.1 34 NNNNNNNN........................... TTCGCTCAAGAAGTGCTGAATCCTAGGTACANNN 3536 35 80.0 35 NNNNNNN............................ TATTTGCAGCTTTATTGATTATCACGTACTGCANN 3466 35 77.1 37 NNNNNNNN........................... AAGCGGCAGATTGTAGACCCCTCCGACCCCCACAGGT 3394 35 100.0 35 ................................... ACTAAAACTCATGTTGTCCATCTCTCACCTCGNNN 3324 35 80.0 72 NNNNNNN............................ TGAGTAGCTGTGAGTTGTATCTCCAACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 3217 35 62.9 36 NNNNNNNNNNNNN...................... GATCGCGCGCTTTGAATGAATTAGATTAGGAATTGT 3146 35 100.0 37 ................................... CATTCAAAAAGAGGCATCTGGAAAGCCCAGGAAGAGT 3074 35 100.0 47 ................................... TTAGCTGTTCCTTTACCTTAGTCCGGTGAGAATCGTTTCAATCCNNN 2992 35 80.0 34 NNNNNNN............................ CACGAGCTAAAGATTATCCTGCCGAAGAAAAAGT 2923 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================================================== ================== 41 35 84.4 38 TTCAATCCCTAATAGGGATTAATTGAAGTTGCAAC # Left flank : TAGAATTTGTTACGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACTCGTGGTTCCAGCGGGATACCTACACCGGGNNNNNNNNNNCTAATAGGGATTAATTGAAGTTGCAACTTTAAATCAATCAATGATGCGATCGCGGAACNNNNNNNNNNCCTAATAGGGATTAATTGAAGTTGCAACGAGATTCACTTATGCGAGAAACTCTCCTACTCGAGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACGAAGGGGGCGGATTCCCCTCTGCTCGTACTCATGGACGAGGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACCGAACAGGATTCGGAAGGTCGAGTGGATCCGCTTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTAATAGGGATTAATTGAAGTTGCAACAGTTCTGTGCAGTTTTCTCTGCCCGGAGGAATCTGGT # Right flank : AGCTAGATTCAGGAGCTTTGCTGTATATGGTTTTCAAGGTTCAGTGGTGCAGACCTGGACAAAATATAGCTTTTCAGCCATCGAGGTGTCAAGATGAATTATGAAAAAATAGGTCAAAAGCTTTGCTGGTAAGACTTTCAGAATTGGTGCAAACCTCTATCTGAGTGTAAAAGGGTTCAAAGCCATAACAGGTAGGGCTTGTAGCCATTAAATTTGACTGCTTTTTTTAAACACCTACAGGTTTGCACCAACTCTAAGCTGAAGAGAGATTAATCTTTATTTATCGACTATAGCAAAACTTGTAACTACGCTTTTGGAGCTGGCTTTTGCCGTTTAGCTGGAACCACCTCGAACTCAAAAGTAGCAATACGGCGATCGCCAATATAAACTTCTATTTTATGCTTACCCATAGGATCACCAGTTGCGATCGTCCAAGAGTTTGTAATCACACCATCTTTGATTGAGTCTGTGCGTTGAATATTTGCTGCTGTACCGTCAGG # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.22, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAATCCCTAATAGGGATTAATTGAAGTTGCAAC # Alternate repeat : NNNNNNNNCTAATAGGGATTAATTGAAGTTGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.30,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [72-40] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 6028-8139 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAI01000117.1 Fischerella thermalis WC245 NODE_1516_length_8977_cov_66.646431, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 6028 36 100.0 41 .................................... CCTCGTCCATGAGTACGAGCAGAGGGGAATCCGCCCCCTTC 6105 36 100.0 35 .................................... CTCGAGTAGGAGAGTTTCTCGCATAAGTGAATCTC 6176 36 77.8 33 ............................NNNNNNNN NNGTTCCGCGATCGCATCATTGATTGATTTAAA 6245 36 75.0 31 ...........................NNNNNNNNN NCCCGGTGTAGGTATCCCGCTGGAACCACGA 6312 36 100.0 37 .................................... CGTAACAAATTCTAACAATCGATGGTGGCGATCGCGG 6385 36 72.2 28 ..........................NNNNNNNNNN TGCCCTTCTATCTTCATAGTGCGGTAAC Deletion [6449] 6449 36 100.0 36 .................................... CGGGCACTTCGTGGATAGGAGTGATGTAGTATGGAA 6521 36 100.0 34 .................................... CCATTGCCAGCTTGTACCCATGCTACGAATTCTT 6591 36 75.0 39 ...........................NNNNNNNNN NGCGAGAAATTTCCCCCAGCGATGAACGTATTCGCAAAA 6666 36 75.0 32 ...........................NNNNNNNNN NTTGCTTATCCTATAAGCGATTTCCTCGTCAG 6734 36 75.0 36 ...........................NNNNNNNNN NTGGTCAGTCGGCGCTTTCTCCCTGCTAGCGGCAGG 6806 36 100.0 36 .................................... CAGTCCATCCTTGGCGGTGCATAGGCATGGGTGCGG 6878 36 100.0 34 .................................... CCCATTGGCACGCGATTTATCTAATAGGCGATCG 6948 36 100.0 37 .................................... CATTGGGCTAGATGGCTCTGGCATCTTGGTCAAGCAA 7021 36 100.0 39 .................................... CGCCGCGATCGCACGCGCGATCGCGCTGCACACCGCCAA 7096 36 75.0 30 ...........................NNNNNNNNN NGATGGCTGTGACTCCAGTGACAAACCCAG 7162 36 100.0 35 .................................... CGGCAACCCAATCTGGCTGCTTGCTGACTCGCCGG 7233 36 100.0 39 .................................... CGGCTGGGACTTGGGCGATACTCGTGCCCACTCCTCCAT 7308 36 72.2 39 ..........................NNNNNNNNNN CCGCGATCGCAGCCACCGTCGGGCACGCGCCAGGCAGAT 7383 36 75.0 36 ...........................NNNNNNNNN NTTTTAGTTTCCCTGCTTTCTCCCATCGTCGCAAGG 7455 36 75.0 33 ...........................NNNNNNNNN NAATGAGATGCTCTATATTAATCTCAGCCATTT 7524 36 77.8 33 ............................NNNNNNNN NNGATGACTTCCTAGACACCATGGCTATGTTGG 7593 36 100.0 39 .................................... CGTCTAAGACCCATCAGACCCAGAGTCGACTTAGCGCGT 7668 36 100.0 37 .................................... CTCGCGGATTTATCTCGAAATCCGCCGAGTCGAATAG 7741 36 100.0 37 .................................... CGCCTCGACCCGCTTCCCCCGACAAGGCGATCGCTTG 7814 36 77.8 39 ............................NNNNNNNN NNCAGAAGCACCCTGCTGGATAACCCAGGTATCGCAGCA 7889 36 75.0 32 ...........................NNNNNNNNN NGTCGACAATCTTGGTAACAAAATCCCCTATT 7957 36 100.0 38 .................................... CCCGCAGATACAAGCCGCTACTCATTCTCTCTGACTTA 8031 36 100.0 37 .................................... CATCGTATAGACCAAGCGGGGATCACAGCTATCGCTA 8104 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 30 36 89.3 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAA # Left flank : ACCTGGGGCAGAAATGGGCTAGGGTTGCAACTTCAATTAATCCCTATTAGNNNNNNNNNNGATATCGCCATGTATCGGAATTCCTGGAAAGGTTGCAACTTCAATTAATCCCTATTAGNNNNNNNNNNTCAGATGCGAGTCCTTAACCGTAGGATGGTGTTGCAACTTCAATTAATCCCTATTAGGNNNNNNNNNNCAGTATATCACCAGCGATCGCCATAAAACGTATAGTTACAACTTCAATTAATCCCTATTAGGGATTGAAACTTGCCCAGCTTTACAGGAATGTACACGCAATGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCAGATTCCTCCGGGCAGAGAAAACTGCACAGAACTGTTGCAACTTCAATTAATCCCTATTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAAGCGGATCCACTCGACCTTCCGAATCCTGTTCG # Right flank : ACGGTCTGTAGCAAAAGAACTAGTGGATGGGTACAAAGTTGCAACTTCAATTAATCCCTATTAGNNNNNNNNNNGTAGCATGGATCTCACACACTTGAGAGCGCGATCGTTGCAACTTCAATTAATCCCTNNNNNNNNNNGAATATCCCGGATCTTTTTTGCTCCTCGCTGAGTTGCAACTTCAATTAATCCCTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCTACCCCTCCGCGAGCGTAGCGAGCCTGTGTTGCAACTTCAATTAATCCCTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAAATCTTTTCTTCCTTCTGTAGATATCGGGTTGCAACTTCAATT # Questionable array : NO Score: 8.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.46, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAA # Alternate repeat : GTTGCAACTTCAATTAATCCCTATTAGNNNNNNNNN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [27-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 3 8692-8938 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAI01000117.1 Fischerella thermalis WC245 NODE_1516_length_8977_cov_66.646431, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 8692 35 100.0 36 ................................... ACCTACTGGGCGCAATTGGGATATTAATTTATCCGC 8763 35 100.0 36 ................................... ACGATGCGGATGGAGCAGGAACATCTTCAGACCCGT 8834 35 77.1 35 ...........................NNNNNNNN NNTTTCTTCTTTCTCTGCGCTACTGCGTCCATCAA 8904 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ==================================== ================== 4 35 94.3 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAA # Left flank : ATCCCTATTAGNNNNNNNNNNGTAGCATGGATCTCACACACTTGAGAGCGCGATCGTTGCAACTTCAATTAATCCCTNNNNNNNNNNGAATATCCCGGATCTTTTTTGCTCCTCGCTGAGTTGCAACTTCAATTAATCCCTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCTACCCCTCCGCGAGCGTAGCGAGCCTGTGTTGCAACTTCAATTAATCCCTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAAATCTTTTCTTCCTTCTGTAGATATCGGGTTGCAACTTCAATTAATCCCTATTAGNNNNNNNNNNGCTGCTCTTCAGCAGATTGCGAGGCAATTGG # Right flank : ACTTTGTCAGTAGTTGGGTATCTACTCCCTAACATCTTTTCGTTGCAACTTCAATTAATCCCTATTAGG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.30,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1245-1005 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAI01000118.1 Fischerella thermalis WC245 NODE_1768_length_1215_cov_77.177780, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================ ================== 1244 26 100.0 46 .......................... CAACTTACTAATTTCACACTCTACCTTAGCTCTAANNNNNNNNNNT 1172 26 100.0 42 .......................... CTCACCCAACTTAACAGACTCGATTTCCAGCANNNNNNNNNN 1104 26 100.0 48 .......................... CCGTATCGTTGTATAGGAGAGCGTATAAACCGGGGAGAGTTGCAACTT 1030 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ================================================ ================== 4 26 100.0 46 CAATTAATCCCTATTAGGGATTGAAA # Left flank : | # Right flank : TCCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGATTTTGTTTTATCTTTTAATTGACAAAAACTCAATCCTTGGCGCTCTTGGCGTCTTGGTGGTTCATTATACCCTGCGGGAAGCCGCTACGCGTCTACATCCCCATTTTATGCAACGCCCTGGCATTAATCCCTATTTGTTCACGTCTTGTAAACTTACACAACAACAGCCAAGCAAGACGACTATAAAATTTCTTAGTCTACTTCAAGTAGACTTGAACTATTAGCTCGCAGTTTACTTGCGGGCTTTCGGGCTTTCAGGCTTGCATATTCAAAAACAAAAAGGTAAGAGAAAAGATTTTTCCCTTACCCAATTCTCATTACCCTTGACACCGAAGCTTTAGTAAGCGCTGCGAGTAAATTGGTAATATAAGAAAATTGCAATAATCGCACCAATCACCGCTACGAACAGACCAGCAAGACTG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATTAATCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 43133-43313 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAI01000078.1 Fischerella thermalis WC245 NODE_270_length_66743_cov_84.110352, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 43133 36 100.0 37 .................................... GTGGTTTCGTTTGGTGTGTTGCCGTCGTTGATGGTTT 43206 36 100.0 36 .................................... ACAGGCGGAGCCAATCAAAAGCATGGCCCACGCAGA 43278 36 80.6 0 .............................NNNNNNN | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 93.5 37 GTTTCCATTCAATTAGTTTCCCCAGCGAGTGGGGAG # Left flank : TTACACTATGATATGGTGCGTGCAGGTTTACTCATTTACGGACTTTACCCAGCCACACATTTGCGATCGCAAATTAACCTGAAACCTGTTTTGCAAGTCAGGGCCAGAGTCACCCAAGTCAAAACCATTGCTGCTGGGACTGGTGTGAGTTACAGTCATCAATTTATTGCCAAGCAAGAAATGCGAATTGCTGTTGTTGGCATTGGTTATGCCGATGGTGTTCCACGCAATCTTTCCAACAAAATGCAGGTATTAATTCGTGGTCAAAGAGTACAACAGATCGGCGCAATTACAATGGATCAACTGATGGTAGATATCAGTGCCTTACCAGATATACAAGAAGGTGAGGTAGTCACCCTACTAGGTCAAGATGGCAAACAACAAATCTCCGCTGATGATTGGGCAAATCAACTAAACACAATTTCTTGGGAAATTCTCTGCGGATTCAAGCATCGATTACCTCGTGTCGGTGTAATTTAGGTTCCCATTGTTTCCATTCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNCGATTTCCGAAGTTCAGATAATTTACAGACAAAAACATCTCAATTCCTCCAAACAAAAAGCCTAAAACCCTTATGTACTAAACAACCGAAGTTCACAACACAAAAATAGGCATTTGCAGAATTTGGGCTGAACTTCGGTAGTTGCTCTTAATTCGTAAAAATTATTGCTCTAGACAACTTTTATGCTATGATAAGGAACTGATGCGGATGTGGCGGAATTGGCAGACGCGCTAGATTTAGGTTCTAGTGCCGCGAGGCGTGAAGGTTCAAGTCCTTTCATCCGCATTTTAAATTAACTAATGACAGTACAAAATTATTTTGTAGGCTTCTTTATTGCAAAGCCGCAAAGCTTACAGGGAATGAGTAGAATTCCAGAGCAGGGTGATGCTAATCCTAGCTGTTCTTTAGTAACTGTTCGCCAGAACTATTGTTTAGATATAGCCGAGAATTAGATATTACATTTATTTTTATTGC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAGTTTCCCCAGCGAGTGGGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 3893-3213 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAI01000101.1 Fischerella thermalis WC245 NODE_509_length_4307_cov_75.533783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================== ================== 3892 28 100.0 50 ............................ TAATTCTTGTTGTTCAAGAGTTATTCCGAAGCCGCTTGCAAGTTGCAACT 3814 28 100.0 46 ............................ GACCTCCGCGGCATCGATCGGGATCTGCGATCGCTTAGTTGCAACT 3740 28 100.0 44 ............................ ATTGATTAATACAGTGTAGCCATAAATATTCGCTAGTTGCAACT 3668 28 100.0 45 ............................ ATCCCAATCAGTGCAACACTAGCGACTTTGGAGATTGTTGCAACT 3595 28 100.0 42 ............................ AATAATAATGAACTTAGGAGAGATAAAACACTTGTTGCAACT 3525 28 100.0 43 ............................ CGATCCATGGATGGGAAATACCCCTTCGTCTCGATNNNNNNNN 3454 28 92.9 42 NN.......................... GAACAATCACGTAATTCACGTATCCGCGAATTGGTTGCAACT 3384 28 100.0 41 ............................ ACCGAAACCACGATTACAACCAGCACGCCTCNNNNNNNNNN 3315 28 100.0 47 ............................ TGCCCATTTCGCTCATGGTACTGGCAACAACCGTCCTTGTTGCAACT 3240 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================== ================== 10 28 99.3 45 TAAATTAATCCCTATTAGGGATTGAAAC # Left flank : TAAATTAATCCCTATTAGGGATTGAAACTTATGCCTACACCGCCGACAGCTGAGCCAGGGAAGCNNNNNNNNNNAAATTAATCCCTATTAGGGATTGAAACAGCAAAAAAGTATCGGAAAGCGAATGCCTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTAATCCCTATTAGGGATTGAAACCAGACGCTCGCCTTTCGCTGGGAGAATTTTTANNNNNNNNNNAATTAATCCCTATTAGGGATTGAAACGCGCCCAGCAGAACTATCCAGAACAATCANNNNNNNNNNAATTAATCCCTATTAGGGATTGAAACGGAGCTGATGTATTTCGCCAGCCATAAAATTGNNNNNNNNNNAAATTAATCCCTATTAGGGATTGAAACTGGCAACAGCGAAATCATCGAACTGACCAATCTTGTTGTTGCAAC # Right flank : TTTGTGTAGGTACACCGGATAGTACCCCAGATCNNNNNNNNNNATTAATCCCTATTAGGGATTGAAACGATGAAATCTATACACGCAATTATCATTTTACCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGACCTCCACGGTGTTGGCTAGGAAGTACATGGTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGTCTAAGGCGTTTGGCGGCTTTTTTACTTATCTGGCTAATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGTACGGCATATGGGAGGGGAGGTACCTAAAGAACTATTATACACTTTTAAAGACGGCACTAAGTCTTACCTAGGCGCGGAGATCCACCACTATAAACAATGGGCTAGGATAGATTTTGAGGACATCACCAGAAGGTTTAAGGAGGGTAAAATAACTTGGGAGCAAGCCAAAGAAGAAGCTAGGAAAGGTTTATTTAAAGAAAAGGTGGTATA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA //