Array 1 199-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000197.1 Thermococcus sp. GR4 NODE_198_length_229_cov_22.431373, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 198 29 100.0 38 ............................. CTACAGAAGATCGAGCAGCGCGAGGCCCAGGAGAGGCG 131 29 100.0 37 ............................. TGCTCTTGATTATTGCACCAGCGAGGGCTTTTCTCAT 65 29 96.6 0 ...T......................... | ========== ====== ====== ====== ============================= ====================================== ================== 3 29 98.9 38 GTTGCAATAAGACTCTAAGAGAATTGAAA # Left flank : AAGCCCGTATATCGTCAAAAGGGGCGGCGA # Right flank : ATAAAAACTCGCCACTCCCTGATGTTCTCCTTGACGA # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 199-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000196.1 Thermococcus sp. GR4 NODE_197_length_229_cov_36.039216, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 198 29 100.0 38 ............................. GTGGATGAAATCACGCCAGGAGAGCTTGAATTCATTTT 131 29 100.0 38 ............................. CCGGTTTCTGAAGTAGTAATAAGCGGCTCTGCGCTCCT 64 29 96.6 0 ...G......................... | ========== ====== ====== ====== ============================= ====================================== ================== 3 29 98.9 38 GTTTCAATAAGACTCTAAGAGAATTGAAA # Left flank : AGCCGAGTAAATAATCCTCTGCGAGATGTA # Right flank : ACTGGCTCATCACCTCACGGGGCTTCGTCCTCCTCT # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAAGAGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 196-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000199.1 Thermococcus sp. GR4 NODE_200_length_224_cov_10.474227, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 195 31 100.0 36 ............................... CTGAAACATCTTTAGCCATCTCCTTAAGCTCTTCTG 128 31 100.0 36 ............................... ACATCTGGAACAACCTGCCAGTGCTTGGTCTTGTCG 61 31 96.8 0 .C............................. | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 98.9 36 GAGTTTCAGTGGGACAGAATTGTGTGGAAAC # Left flank : TACATGGTCTGAGTATAGGCCTGTGCGA # Right flank : CTGACAGTGTATTGGTCTATGTTTGTTGGAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTTCAGTGGGACAGAATTGTGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 198-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000198.1 Thermococcus sp. GR4 NODE_199_length_224_cov_13.206186, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 197 33 97.0 34 .A............................... GTATTTTCGTCGTATTCTACCAAGGTGGGGTCAG 130 33 97.0 34 ..G.............................. TTTTAAATCGACTGGTTGAGCTTCTCAAAAAATA 63 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 3 33 98.0 34 TTAGTTGCAATAAGACTCTAAGAGAATTGAAAC # Left flank : AGATGAGAGGAAGCAGGGAGACGTTC # Right flank : CACAGCACCCTCGACGTTTCTACGACAGTCG # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAGTTGCAATAAGACTCTAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.70%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 33673-33239 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000020.1 Thermococcus sp. GR4 NODE_20_length_33672_cov_47.909077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 33672 30 96.8 36 -.............................. ATTGGTTCTGAACTGGCGCAAGGTGGCGCTCGGCGT 33606 31 96.8 35 C.............................. CGCAGAGGACGTGTCCCTCCCTCGCTATCACTAGA 33540 31 100.0 37 ............................... TTGCACTGTCCTTCACACTCATTGCTGCGGTCGTGCG 33472 31 100.0 36 ............................... GAACATGACAAAGCTCTACACGCTCGACAACGGCTC 33405 31 100.0 36 ............................... GTCTAACGGTTTCCCTCATTTTGCCCCTCAACCTAT 33338 31 100.0 36 ............................... TTCAATCTCTGCGAGCTTTTTGTATATCCAAACTAC 33271 31 93.5 0 C.........................C.... | G,T [33242,33244] ========== ====== ====== ====== =============================== ===================================== ================== 7 31 98.2 36 GGTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : | # Right flank : TTCTTCTGGGAAGGAATTAATTACATAATTCTACAATAAATCAATAATCTAATTGTGCAAAGATAGATCTGGAGGGAAATCGCAGCAAATTAGCGTTAAGTGGAAGGCACTATGAAACCCAAAGAAACAGAAAAGGAACAAAATCGCCCTCACTCGAGGGCAGCCAAAAGCTTCTCCATGAACATCTTCTCCGGGTAAGCTCCCTCGAACTGAACCTTGTCCTCGCCGTCCACCTGGATGACGATCTTCGGGACGGCCATGACACTGTACTGGTCAGCCCATTCCGGATACTCGATGGCCTCAACCATGTCTCCCCTGATCTTGCCCTTGCCGGCGTTGGTGTTCTCGATGGCGAACTTGTGGGCCATCCTGACCGCGAGCGGGCAGTATGGGCAGGTCGGGGTGACGAAGACGAGTATCCTGACGTCCCTGTCGACCTTGGCAAGCTCCTCCTTCGTATCAGGCATGAGGTCAGTCTGGGCGTTGCTGACATCGACGAT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 30-194 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000200.1 Thermococcus sp. GR4 NODE_201_length_224_cov_8.556701, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 30 30 100.0 38 .............................. TGAAGTCAAACGTGCTGACGGCTCCGCCCGTGTTCTCG 98 30 100.0 37 .............................. ATTGGTTCTGAACTGGCGCAAGGTGGCGCTCGGCGTC 165 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 38 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : CTTTCCCCATCACTCAACCCTCCTTAGCTG # Right flank : CGCAGAGGACGTGTCCCTCCCTCGCTATCA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 2106-352 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000050.1 Thermococcus sp. GR4 NODE_51_length_2203_cov_34.150289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 2105 29 100.0 37 ............................. ACCGGCTTCTTTGCACCGTGTTTTTTAGTATGTAAGT 2039 29 100.0 35 ............................. ACGCCGACCAGACCAACACCCGTACCATTCGTCTA 1975 29 100.0 35 ............................. ACGCCGACCAGACCAACACCCGTACCATTCGTCTA 1911 29 100.0 37 ............................. CTTTTACCTCGAGGAGCATGGAGAGGGTTACTAAAAT 1845 29 100.0 38 ............................. CATGATTTTTCCCTTCACTAAGATTACTTCGTGCCTGA 1778 29 100.0 37 ............................. CTTTGCATCTGCATCAAAATCACCAACACTTCTAAGA 1712 29 100.0 39 ............................. CAGATGTAGGGCTGGTAAGGGCTCCAAACCTAAACGCAT 1644 29 100.0 37 ............................. CAGGAATGCCAGTGCAGTTATCACTCCAACAAGCTCT 1578 29 100.0 37 ............................. TTCATCCGGCAGCTCGACGAAGAGTCAGCGAGGTTGG 1512 29 100.0 38 ............................. TCAATGGCTCCTATGAGTCTGGTTGCAGTGAGGTACTC 1445 29 100.0 37 ............................. AAGCAAAGAGGCTTATCAGTGCTGTGAGATTTGAGTC 1379 29 100.0 36 ............................. CTTACCTCAACGCGACGCTCTTCTGCCCGCTCGACG 1314 29 100.0 36 ............................. TCCGGTCTCGAAGTCATAGCGGCCTCTGCAACGCTC 1249 29 100.0 38 ............................. TTTCCCCAGCTGTTGTGATGCCGGTCGTCTCCTTCTGA 1182 29 100.0 40 ............................. TCATGGGCAACGTTGATGAAGCGATGAGGGAAAAGCTTGC 1113 29 100.0 37 ............................. TGACTCCAGGCTCATTCGGCTTTGGGACTTCAATGCC 1047 29 100.0 37 ............................. TGGTTGTACATGGTCTGAGTATAGGCCTGTGCGATGA 981 29 100.0 38 ............................. CTGAAACATCTTTAGCCATCTCCTTAAGCTCTTCTGGA 914 29 100.0 37 ............................. CTGGGAGTTTGCTGAGGAAGAGCCTGGCTTTGACCTC 848 29 100.0 36 ............................. CGTTTCTGAAGTGTCGGGCCAATACGCAAAAATCCA 783 29 100.0 38 ............................. ACATCTGGAACAACCTGCCAGTGCTTGGTCTTGTCGGC 716 29 100.0 37 ............................. TGACAGTGTATTGGTCTATGTTTGTTGGATCGAGAGT 650 29 100.0 38 ............................. ATCGGCTTTGGCCGAAAGAGATTTTTCCAGCTCTTTCT 583 29 100.0 38 ............................. ATAATCGCGGCTGTCTCTTTCGGGCTGTGATTAGTCGT 516 29 100.0 38 ............................. ATAATCGCGGCTGTCTCTTTCGGGCTGTGATTAGTCGT 449 29 100.0 40 ............................. TCATAGTAGGTGTATCCACCGAAGATGTGAACCCTTGTGA 380 29 89.7 0 ........A...............A..G. | ========== ====== ====== ====== ============================= ======================================== ================== 27 29 99.6 37 GTTTCAGTGGGACAGAATTGTGTGGAAAC # Left flank : AGGGCTTTCAGGGGTCCCCCAGTAGGGCTTTCCAGAAACACTTAAATATCCGGGGTTACAGAGGATTCTGTTGGAAAAACAGGGTGAAAAAGTGTCC # Right flank : CCCCATTACTGTCCCGCTTGGTTTCCGTAGAACGGCTCGTATGGCAAGAGCGGGAGCTAACGAACGAGCTGAAAGCCTGACCGGAACGTTTCTTTAGAGTCAGCGGATATTCAAAAAGAAATAAAACCTGATTTCCACGGGGTTAGAAGAAAAAGGCATTCAACAATAAGAGTTATAAAGATAGAGCATGCACGTTAAAGACGGTAACCTTCCGGGGAGGATAGATTATGCGCATTAAGGTCAGTTTTTATCCCCCTGATGGTGGGTTTATTTATCCCAACAAGCACGCCGTTCAGGGGTTCATCTACAACATGCTGAAGGGCACGGAGTACGGGGAAAACCACGACGCACC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTGGGACAGAATTGTGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 1204-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000057.1 Thermococcus sp. GR4 NODE_58_length_1299_cov_42.789249, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1203 30 100.0 37 .............................. TCTTGTTGCGGATTATGGCGGTTGATAGTATCATGAC 1136 30 100.0 37 .............................. ACCCTCAACCGCGAGAAGGGCCTGTACTACATTGAGA 1069 30 100.0 37 .............................. TGTCACGCAGGTGCATCCTCGCCCTAGCCTCCATCAA 1002 30 100.0 36 .............................. CAATATAGACCGAGAGCAACAAATCCTCACGGGTCA 936 30 100.0 37 .............................. TATCATAAGTTGGATCCTGAGCTGAGGGAGAAATACA 869 30 100.0 37 .............................. CATGCTCGCGAGGCTGTTGTTCATGTCTCACCCCTCC 802 30 100.0 38 .............................. CAGCGTGGCTCCAGGCTTCGCGAATAACGTTCTCGATG 734 30 100.0 36 .............................. GCCATCGCGTTAGCCTGCTCATCTTCCGTCCACTGC 668 30 100.0 36 .............................. TAGACAACTGGGACGATGTGAGCACTTTGGAGAAAG 602 30 100.0 37 .............................. TGCATGCTCAAGGGTGTAGAACACAACATCAAAGTTG 535 30 100.0 36 .............................. AGTTGCAGTATGCAAGTGCTCCATATCCGCCGTTGA 469 30 100.0 39 .............................. GCATCAAATTACCTCACTCTTGACCTTGACGTTTATAAG 400 30 100.0 37 .............................. CGAAAGAGATTGAGAAGAGCGAAAAGAAGAGCAAGAA 333 30 100.0 38 .............................. GGGGCCGCTTGCCGAGCTTCTTGAACTGCTGTACCTCC 265 30 100.0 36 .............................. ATTTACTAACCTCAAGTTACTAAAACCGACAAAAAA 199 30 100.0 38 .............................. AGTCTCCCTTAAAGTAGTATGCCCTTTTGTCATGTCTA 131 30 100.0 37 .............................. CGGTTTCTGAAGTAGTAATAAGCGGCTCTGCGCTCCT 64 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 18 30 100.0 37 GTTGCAATAAGACTCTAAGAGAATTGAAAC # Left flank : CAGCACATTGTCGTTTAAACTCCCCTCCGCAGAAAGACTTAAATATTTCCAGCTTTCTTAATTCTTTCTGAGGCAAAAGGGGGTAAAAGCCGCCC # Right flank : CTGGCTCATCACCTCACGGGGCTTCGTCCTCCTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 32-1069 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000062.1 Thermococcus sp. GR4 NODE_63_length_1099_cov_20.006173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 32 30 100.0 37 .............................. TGGATGAAATCACGCCAGGAGAGCTTGAATTCATTTT 99 30 100.0 38 .............................. ACCTCGACGAGGTAGTCGTACAACTCCATCAGCTTGCG 167 30 100.0 38 .............................. TTGGCTCTGCTGGGGGTGATCCCGTGATTTGGGTCCGA 235 30 100.0 37 .............................. AATTCACAAGCAGTGATACTAGCTTATTGGTTATCCA 302 30 100.0 36 .............................. CGTGGCAGGTGGCGGTATAGCCATGCGGCGAAGGTG 368 30 100.0 38 .............................. CACTATAGTGTCATCGAGCGCAATATAATCCTTCCAAA 436 30 100.0 35 .............................. GTCGTCAATCTCGGATACCCCGTCGTGCTGTTGAA 501 30 100.0 38 .............................. CTCAGCCGTAGCCCCGTAGTTCGTGCCGTCCAGCTCCT 569 30 100.0 36 .............................. ACAAACACCCATACACGTGGCGACCACTGGGTGTAC 635 30 100.0 38 .............................. TGCTTCAACCACGTGATGATTTTCCTAGCAGCCAGCCT 703 30 100.0 37 .............................. TTAAGAGGAACTCATGAGACTCCCTCCAGACCTCCAG 770 30 100.0 38 .............................. AGGGGTTTTTGATGTGCAGCGTAACAGCTGCAACCTGT 838 30 100.0 37 .............................. GATATGGGAAAAAGAAGAGCCGATAAACAAGGTTGGG 905 30 100.0 38 .............................. TCTTTACGACCTCGACCCTGTCATAAAGTATCCGAACC 973 30 96.7 37 .............................T GTCACCCCCTCTGTGCTAAACAAGTATTCAAAATACA 1040 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 99.8 37 GTTTCAATAAGACTCTAAGAGAATTGAAAG # Left flank : AGCCGAGTAAATAATCCTCTGCGAGATGTAGG # Right flank : ACAATTAAAGGTAGTAGGACGGGACACTCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 63-830 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000071.1 Thermococcus sp. GR4 NODE_72_length_831_cov_46.558239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 63 29 100.0 37 ............................. TAAAAACTCGCCACTCCCTGATGTTCTCCTTGACGAC 129 29 100.0 39 ............................. TCTGCCAACCCGCCTGGAGGCAACTTCAATCCAAATAAA 197 29 100.0 39 ............................. TACAACTCTATATTCAGACCCCCACAAGAGATCCATGTC 265 29 100.0 39 ............................. TCCCTATTGGGTGATGGGTGGCTATATCGTACATAGTGG 333 29 100.0 38 ............................. TCCATAACTTCCTCCTCTTATCCACAACCATTATGAGA 400 29 100.0 38 ............................. TCGGCACCGTTCGGGGTACGGCTCGCTTCATAGACCAG 467 29 100.0 38 ............................. TGCGCTTATAGTGGCGCCAGGCGTATCTATAGTGCCTC 534 29 100.0 40 ............................. TTCTAAAACAAGCGAATCGCTATAATCAGGGCTCTTCGGC 603 29 100.0 37 ............................. GGATTACCTCGAGGGTCTTCATGAAGGTCTTAACGTC 669 29 96.6 38 .................G........... GAAAACCAGCCGAGTAAATAATCCTCTGCGAGATGTAG 736 29 100.0 38 ............................. GTGGATGAAATCACGCCAGGAGAGCTTGAATTCATTTT 803 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ======================================== ================== 12 29 99.4 38 GTTTCAATAAGACTCTAAGAGAATTGAAA # Left flank : CAATAAGACTCTAAGAGAATTGAAATGCTCTTGATTATTGCACCAGCGAGGGCTTTTCTCATG # Right flank : A # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAAGAGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 939-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000068.1 Thermococcus sp. GR4 NODE_69_length_969_cov_32.258907, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 938 30 100.0 37 .............................. TACAGAAGATCGAGCAGCGCGAGGCCCAGGAGAGGCG 871 30 100.0 38 .............................. AAGAACACCATGACGAAGACCATTGCAACTCCGTACAT 803 30 100.0 38 .............................. TACCTCATGCCCTCACCCCCCACGCGGTGAGGCTCGCC 735 30 100.0 38 .............................. CTAGCCGCGCTGGGGGTGCTGCCATGAGGAAGTTCTAC 667 30 100.0 40 .............................. AGCTGAGTACCACTGTCATGGAGCATCGCGGAGTCGTGAT 597 30 100.0 38 .............................. GCGTTTGTAGTGATAACTGCATAAACATACGCGTCGAA 529 30 100.0 36 .............................. AGAGGCACTTCACGACAGCATAATCAGCCACGGCCA 463 30 100.0 37 .............................. GCAAAAAAAGGTAAGGAGGGATGTGGAGATGGCGGTT 396 30 100.0 38 .............................. CCGACAAGTTGAAAGCCTTGTTACCACCGCTGTTGATG 328 30 100.0 37 .............................. GCGAGGGCTGAGCGTCGTGGGGAGATTGTAGAAGCGG 261 30 100.0 38 .............................. CTTAATGACTTCGTGAAAGAGCACTTTGGCATCTCAAT 193 30 100.0 37 .............................. ACAATACTCAAGAGAATTACAGCTGGATAATCAGCTC 126 30 100.0 38 .............................. AGAAGTTCAACGAGGTCTTCAAGGAGCAGTACAGCGGG 58 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 14 30 100.0 38 GTTGCAATAAGACTCTAAGAGAATTGAAAC # Left flank : AAGCCCGTATATCGTCAAAAGGGGCGGCGA # Right flank : CAAGAGCTGGAAAAACTCTATGAGGTCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 669-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000079.1 Thermococcus sp. GR4 NODE_80_length_698_cov_84.819615, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 668 30 100.0 37 .............................. AGGTAACCAAAGAGCAACGTGAGCGCTAGGCCGATGT 601 30 100.0 36 .............................. ACGCTTCTGTTCCTTATCATAGTCTCCGAAATACAT 535 30 100.0 39 .............................. CTAACAGGGCAATCGTCGTGCTGAATTTAGTCATTGTTG 466 30 100.0 38 .............................. CGAACAGGCCGCGCAGGGCGCCGCGCAGGCGAGCGGCG 398 30 100.0 38 .............................. TAGTTTATACTGTAAGGCAAAGCCCAGAAAGCGTTGAT 330 30 100.0 37 .............................. TTTTTTCCCTTTCCCCATCACTCAACCCTCCTTAGCT 263 30 100.0 38 .............................. TGAAGTCAAACGTGCTGACGGCTCCGCCCGTGTTCTCG 195 30 100.0 38 .............................. GGACGGAAGTTATGCGGGCGGCGAACTATGGGCGTTAT 127 30 100.0 37 .............................. ATTGGTTCTGAACTGGCGCAAGGTGGCGCTCGGCGTC 60 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 100.0 38 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : TTTTTATCAACAAAAATCTGTGTTGTGCT # Right flank : GCGCAGAGGACGTGTCCCTCCCTCGCTATCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 574-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000081.1 Thermococcus sp. GR4 NODE_82_length_671_cov_6.154412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 573 29 100.0 39 ............................. TACGACGATGAGAGCTATGCCTATGCTCAGGAGCGGGTC 505 29 100.0 38 ............................. TCTGGAAGTAATGTCAGCATTCACGTGGATCTCCGCGG 438 29 100.0 38 ............................. CATCTTTCTCCTTCTCCTCCTTCTTGCCATTTAGATCA 371 29 100.0 38 ............................. CGCAGGGCGGCGCCAAGGCCAATCCCGGCAGGTGCCGG 304 29 100.0 38 ............................. CATGATTTTTCCCTTCACTAAGATTACTTCGTGCCTGA 237 29 100.0 38 ............................. TTGTCCGTGAGGTTCCACTCAAGCTTTTTAATCGTGAG 170 29 100.0 38 ............................. TAAAAGCGCTCATGCTCCGCCCTCCTCCCCGTTCTCCT 103 29 100.0 37 ............................. TGACTCCAGGCTCATTCGGCTTTGGGACTTCAATGCC 37 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 9 29 100.0 38 GTTTCAGTGGGACAGAATTGTGTGGAAAC # Left flank : AGGGCTTTCAGGGGTCCCCCAGTAGGGCTTTCCAGAAACACTTAAATATCCGGGGTTACAGAGGATTCTGTTGGAAAAACAGGGTGAAAAAGTGTCC # Right flank : CTGGTTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTGGGACAGAATTGTGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1-644 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000089.1 Thermococcus sp. GR4 NODE_90_length_644_cov_48.909091, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1 30 100.0 36 .............................. ATGAGAAAAGCCCTCGCTGGTGCAATAATCAAGAGC 67 30 100.0 44 .............................. TTGAAACACGGTTTCGCCACGGAGGAGGATATAAAGGAGATCTT 141 30 100.0 36 .............................. GGTAGAAGTCGTCTGACAAGGACGCCACGACTTCTC 207 30 100.0 37 .............................. CGGGAGATGCTCAGGGAAAACGCAATGCACCTCCTAC 274 30 100.0 39 .............................. ACTGAGATGCGGATAGCGCTTTGGGAGTATTCGTACCAC 343 30 100.0 38 .............................. CTCGCTTTACTAAGGACTTTAAGCGGAAGGTGGATCCC 411 30 100.0 36 .............................. TTTGATGTTGTGTTCTACACTCTTGAGCACGCAGCA 477 30 100.0 37 .............................. CTCCAGAGGCCTGAGTTCCGGAGACCCAGTAGTGCCT 544 30 100.0 41 .............................. TTGAGCATCTGCGCCACTGCGGTGACGGTGACACCTTCCTT 615 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 10 30 100.0 39 ATTTCAATTCTCTTAGAGTCTTATTGAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAATTCTCTTAGAGTCTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 568-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000091.1 Thermococcus sp. GR4 NODE_92_length_630_cov_84.996024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 567 30 100.0 38 .............................. TGGCTCATCACCTCACGGGGCTTCGTCCTCCTCTTCGA 499 30 100.0 37 .............................. CTTCATAGCTCCTCCTCCTTTCGTGGTGGATATCCGT 432 30 100.0 38 .............................. TGATGAATTCGCCGATTGGAATTCTCGGGAAAGCTACA 364 30 100.0 37 .............................. CAAAGCTGCGGTCTCCAACCTAACGAAAGACGGCGAA 297 30 100.0 37 .............................. GGAGATTTCGAAGTGAGAAGAATTAAAGCAGAATTGA 230 30 100.0 38 .............................. AACATTTGGCCAACTTCTCCGGTTCTGAACCACATCTT 162 30 100.0 36 .............................. CTTATAAGCCCGTATATCGTCAAAAGGGGCGGCGAT 96 30 100.0 37 .............................. TACAGAAGATCGAGCAGCGCGAGGCCCAGGAGAGGCG 29 29 96.7 0 .............................- | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 99.6 37 GTTGCAATAAGACTCTAAGAGAATTGAAAC # Left flank : CAATAAGACTCTAAGAGAATTGAAACCGGTTTCTGAAGTAGTAATAAGCGGCTCTGCGCTCC # Right flank : A # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 635-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000090.1 Thermococcus sp. GR4 NODE_91_length_635_cov_54.468504, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 634 30 100.0 38 .............................. AGAAGTTCAACGAGGTCTTCAAGGAGCAGTACAGCGGG 566 30 100.0 38 .............................. AAGAGCTGGAAAAACTCTATGAGGTCGAGAACCTTAGC 498 30 100.0 37 .............................. CCGACGATGCCGATAATCATGTTCAGGTCACCCTTCA 431 30 100.0 37 .............................. TTTTTGTGGATAAAAGTTAAAGCGGTGGCTAGTCCCC 364 30 100.0 36 .............................. CTTTGTGAGTTTGTCTTTGTTGAGGCCGAGGAATGA 298 30 100.0 35 .............................. TGACTCGGCAATGAAGTCCCTCAAAAACTCCTCGA 233 30 100.0 38 .............................. ACCGTCCGGCTGAGGAGGTAACGCTGGAGAACTACAAA 165 30 100.0 38 .............................. TGAGGAGAAGATGAGAGGAAGCAGGGAGACGTTCATAA 97 30 100.0 37 .............................. GTATTTTCGTCGTATTCTACCAAGGTGGGGTCAGTTG 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 100.0 37 GTTGCAATAAGACTCTAAGAGAATTGAAAC # Left flank : | # Right flank : C # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 46705-46867 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000013.1 Thermococcus sp. GR4 NODE_13_length_46867_cov_51.051177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 46705 29 100.0 38 ............................. ATTAAAAAGAGTGTCCCGTCCTACTACCTTTAATTGTC 46772 29 100.0 38 ............................. TGTATTTTGAATACTTGTTTAGCACAGAGGGGGTGACA 46839 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 3 29 100.0 38 TTTCAATTCTCTTAGAGTCTTATTGAAAC # Left flank : GGAGAAATTAAGAGCATTCTCTTTCCGACGAGGGGAGGAAAGCATAGCGCCATCAGTGCGGAGCTCGTCTCGATCCTCGCCGATGCGTACGGTGCAAGAGTTACTGTGCTCAGCGTCAACACCACCGGCAAGCTGGAAGAGAAGGTAAGGGCACAGTTGAAGCCGGTAATGGAGAGGATCGAAAACGCGGAGCTGAAGATAGTGAACAAAAGCGACGCGGTAAATGCGATACTTGATGAGTGCAGGAAGCACGACCTCGTGGTCATGGGGGCAACGAGGGAGGGCCTTTTCAAGAGGCTACTCTTTGGGGAAGTGCCTGAAAGGGTAGCGAGCAAATGCCCGAAGACAGTTATGCTTGTGAAGGGCAACAGAGGCATAAGGGCGAGAATAAACCGCTTGCTCGGAAGGAGGATGGAGTAAAAGCACTTTTCACTTTTTGGTTTCTTATTTCTTGTTGAAACTACCTCGCGAAAACCTCGAGCAGTCCGTCATCATCGTTA # Right flank : | # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAATTCTCTTAGAGTCTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 48-277 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000120.1 Thermococcus sp. GR4 NODE_121_length_514_cov_0.733850, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 48 30 100.0 37 .............................. AGCAATCTGAAGAGCAATGCGCTCAAACGGAATAACC 115 30 100.0 36 .............................. GGCTAGAGCTGCAGCGTCAGGTGCTCCCCAGTTCTC 181 30 100.0 37 .............................. CCGAAGACGCGACGGACTTATGGCGGGAGCTGGATTA 248 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 GTTGCAATAAGACTCGAAGAGAATTGAAAG # Left flank : ATTGAAAGGAGTTTGTTTGCCCACCGACGACTACATGATTATTCAAAG # Right flank : AGCTCCTCTGTATTGACACCGGGGACGAGAATGAGACGTTGCAATAAGACTCTAAGACCCGAAGAAATTTCTCAGAACAAAATAGGGCATCCAAGGAAAAGGAAACCTCAAACCTTAATCCTCTTCCAGACCGTCCCCTGCGGTGTGTCCTCCAGCTGGATGCCGAGCTTTCTCAGCTCGTCCCTGATTCTGTCGGCCAAATCGAACTTCCTCTCCTTCCTGAGCTGACTCCTTACC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 397-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000148.1 Thermococcus sp. GR4 NODE_149_length_427_cov_15.316667, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 396 30 100.0 36 .............................. GCTCTTGATTATTGCACCAGCGAGGGCTTTTCTCAT 330 30 100.0 38 .............................. CCAGCGGGCACGGGCGCCCTTTCTTGCTATTTCCCTCC 262 30 100.0 38 .............................. CCCAGGCACGCGGCGGAGAAGCACGGAGCTGAGTACTT 194 30 100.0 37 .............................. AGATTGACGACTGGAGTCATTAACAATGCGCTGGAGT 127 30 100.0 37 .............................. GTCACCCCCTCTGTGCTAAACAAGTATTCAAAATACA 60 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 99.5 37 GTTTCAATAAGACTCTAAGAGAATTGAAAT # Left flank : TATCCTCCTCCGTGGCGAAACCGTGTTTCA # Right flank : GACAATTAAAGGTAGTAGGACGGGACACTCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 467-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000015.1 Thermococcus sp. GR4 NODE_15_length_46254_cov_46.637718, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 466 30 100.0 36 .............................. AGTATATCACAAGGGGCTTCGCCTTGTTTTCGAAGT 400 30 100.0 39 .............................. AAGCTCCCGTGAAGATAGAAAATATATGGTATTTAGCGA 331 30 100.0 37 .............................. CGGGTTAATCTTATTCATATTATATATTATGAATAAG 264 30 100.0 38 .............................. TTTATCTCAATCAAGACTTTCTCCTTCCCGTTCTCGTC 196 30 100.0 39 .............................. TACAGGTGGGAAATTCTAAATTTTGTTATCGATGTGCTG 127 30 100.0 41 .............................. AAGGAAGGTGTCACCGTCACCGCAGTGGCGCAGATGCTCAA 56 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 7 30 100.0 38 GTTTCAATAAGACTCTAAGAGAATTGAAAT # Left flank : GGGAGCTTATAATCGTTGCCCGAAGGGTTTTCGGAGCAGATTCATACTGCGGCATCTTTGGCCCTCTCACTTCAACGTCCAGAGCTTTGGGAAAGCGGGACGGTGAAGTGTTTGGAAGTCTTTAGTAACGCCTGGTAATTATCGGACTTTTTGTTACGATTTTCATCTTGGAATGTAACGAAATTTTTTCAGAGTGTTGAGAAGAGCATGATGCGACGGTCTCCAGCCTATTTTCTAAGGGAAACTGCTCTTTTTGACTGTTGCATGGTTTTGAAGTCTGGAGATTAATTTTTCTCTTTTCTTTGGGCTTTGGAAGTCTCGTAAACATTCTTGTTCACAGGATTTTTTAAGCTGTGCAGGCCTGAAATTCTTAGAGGAGGTTCTTGAAAGATCTCAATGAAAGAATCCTCATAGCGCTGAAACTACCCCTCCGCAGAAAAACTTATAAGATTTAAGGCATTTTATACCCCTATAAGACGAAATAAGGAAAAAACTGCCCT # Right flank : TAGGCACTACTGGGTCTCCGGAACTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 45-270 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000175.1 Thermococcus sp. GR4 NODE_176_length_381_cov_9.787402, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 45 28 89.3 38 ...T.......C..........G..... AGTAATGAAAAGACTCACAGGAGGGGCCGAAAAATGCG 111 28 100.0 39 ............................ AAGGCTGGCCTGTGGTACTACACACTGCTTGATCCGGGT 178 28 96.4 37 .................C.......... ATTCAACACCACGACAGGATATCCAAAGCTCGTGAGC 243 28 89.3 0 ...........C.....C....G..... | ========== ====== ====== ====== ============================ ======================================= ================== 4 28 93.8 38 TTTCCACACAATTCTGTTCTACTGAAAC # Left flank : AATATCAAGGCCACTACTGGTATCGCGCCGACAAGATTCAGTTGT # Right flank : TCGTCAGGGACATTTTATCTGTTTACTGACACCCAGTGAGCCCATAGTTGGTAACACACCTTAGCTCTCCTTCAGCGCCCTGCTTACGATGTCCTCCACCTTTTTGAGTCC # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCACACAATTCTGTTCTACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 97-530 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000107.1 Thermococcus sp. GR4 NODE_108_length_558_cov_11.575406, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 97 30 100.0 37 .............................. TATACTTATGATATAGTTCTTCGAGGTTGTACGGATC 164 30 100.0 38 .............................. CTGGTTGGAACACAATGGCTGCCAACATCTGGAACAAC 232 30 100.0 38 .............................. CATAAACCTCAACCACTTGAACCTTCTGACGTCAAGTG 300 30 100.0 37 .............................. TTGGCCGTTTAAAACCGTTTACCATCGGCAGGTTGAA 367 30 100.0 36 .............................. GCCATCGCGTTAGCCTGCTCATCTTCCGTCCACTGC 433 30 100.0 38 .............................. AGAAGTTCAACGAGGTCTTCAAGGAGCAGTACAGCGGG 501 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 100.0 38 GTTGCAATAAGACTCTAAGAGAATTGAAAC # Left flank : CAGCACATTGTCGTTTAAACTCCCCTCCGCAGAAAGACTTAAATATTTCCAGCTTTCTTAATTCTTTCTGAGGCAAAAGGGGGTAAAAGCCGCCCTG # Right flank : AAGAGCTGGAAAAACTCTATGAGGTCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 370-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000183.1 Thermococcus sp. GR4 NODE_184_length_371_cov_77.323770, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 369 31 96.8 37 T.............................. AGCCCGTACTGTCTTTTTGGCTGGTCTATGAAGCGAG 301 31 100.0 38 ............................... TGCTGCCAAGCAAGCAGAGGGTCGACCCTCTCCTCCTA 232 31 100.0 36 ............................... AGGCCTTGGAAAGGTACTTCAAGGTCAAGGAAGGTC 165 31 100.0 36 ............................... ATAGCGCTTTTTATCAACAAAAATCTGTGTTGTGCT 98 31 100.0 36 ............................... AGGTAACCAAAGAGCAACGTGAGCGCTAGGCCGATG 31 31 96.8 0 T.............................. | ========== ====== ====== ====== =============================== ====================================== ================== 6 31 98.9 37 CGTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : C # Right flank : G # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : TGTTGCAATAAGACTCTAGGAGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 98-333 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000184.1 Thermococcus sp. GR4 NODE_185_length_359_cov_11.482759, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 98 30 100.0 38 .............................. CTTTTCTCGCCTGCAACTCCTCGAGAATGTCATATAGG 166 30 100.0 37 .............................. TAGAATTCTGCAAAGGACTTAATTACTGGAGTTGGGA 233 30 100.0 41 .............................. AAGGAAGGTGTCACCGTCACCGCAGTGGCGCAGATGCTCAA 304 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 4 30 100.0 39 GTTTCAATAAGACTCTAAGAGAATTGAAAT # Left flank : AATCCTCATAGCGCTGAAACTACCCCTCCGCAGAAAAACTTATAAGATTTAAGGCATTTTATACCCCTATAAGACGAAATAAGGAAAAAACTGCCCTG # Right flank : AGGCACTACTGGGTCTCCGGAACTCA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 263-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000185.1 Thermococcus sp. GR4 NODE_186_length_292_cov_21.157576, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 262 30 100.0 37 .............................. AGGTAACCAAAGAGCAACGTGAGCGCTAGGCCGATGT 195 30 100.0 39 .............................. CTAACAGGGCAATCGTCGTGCTGAATTTAGTCATTGTTG 126 30 100.0 38 .............................. TAGTTTATACTGTAAGGCAAAGCCCAGAAAGCGTTGAT 58 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 4 30 100.0 38 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : TTTTTATCAACAAAAATCTGTGTTGTGCT # Right flank : GTTTTTTCCCTTTCCCCATCACTCAACCC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 262-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000186.1 Thermococcus sp. GR4 NODE_187_length_291_cov_34.957317, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 261 30 100.0 37 .............................. GTATTTTCGTCGTATTCTACCAAGGTGGGGTCAGTTG 194 30 100.0 37 .............................. GACCCGCATGCGCTGGACTTCCTTGACGGCTACCAGT 127 30 100.0 37 .............................. TTTTAAATCGACTGGTTGAGCTTCTCAAAAAATATTA 60 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 GTTGCAATAAGACTCTAAGAGAATTGAAAC # Left flank : AGATGAGAGGAAGCAGGGAGACGTTCATA # Right flank : CACAGCACCCTCGACGTTTCTACGACAGTCG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 97-260 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000187.1 Thermococcus sp. GR4 NODE_188_length_286_cov_61.635220, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 97 30 100.0 36 .............................. AAAGCATATCTTCCATACCCATAGTGCCGACCTCCT 163 30 100.0 38 .............................. AGCCCGTACTGTCTTTTTGGCTGGTCTATGAAGCGAGC 231 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 38 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : CCATATAGATACGCATTAGCAGACCTCCGGAGAAAGGCTTATAAAAACTAAGCTCTCATAATCTTTTGTTAGGCAGAAGAAGGAAAAAGCCGCCCTG # Right flank : TGCTGCCAAGCAAGCAGAGGGTCGAC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 1-298 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUO01000018.1 Thermococcus sp. GR4 NODE_18_length_35556_cov_53.363177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1 30 100.0 37 .............................. TTTTAAATCGACTGGTTGAGCTTCTCAAAAAATATTA 68 30 100.0 38 .............................. ACAGCACCCTCGACGTTTCTACGACAGTCGTTCAGGAG 136 30 100.0 36 .............................. ATCATGTGGGTGGCTGGGTCATCGAGCTAACAGAGG 202 30 100.0 37 .............................. CAAATTCCAACCGCCGAAGCTAGTGCCCCATTTCCTA 269 30 90.0 0 ............T...........C....T | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 98.0 37 GTTGCAATAAGACTCTAAGAGAATTGAAAC # Left flank : | # Right flank : TTACAAAAGCTCTCCAAAAAATAAATCCTCCTTCGTCCCCCCAGCCTTCCTGAAGACCTTCTCGCTCCAGCTTACGTTTCCAACGCTTCTCGGCCAGTGGGCATCGCTGGCAAAGGTGAGCTTTATACCTCTTTTTATGCACGCCCTGATGAAGTCCAGTTCGGGGACTTTATAACGTGAGCTTATCTCGAAGGCCTTTCCATTCGCTTCGGCCAGCTCTAGTATCTCCCTCAGGCCCTCCTCGCTTGGATAGCCTGTGTAGGGGAAGCTCGCCCCGAAGTGGCCGATTACGTCAACGTTCTCGTCTTGGAGGGCGAGCTTAACGAGCTCGACGTGTTCCTCCGGCGTCTCCACCCACAGGTGAACGCTTGCTATCACGTAATCAAGCTTCTTGGCTATGTCCGTGGTTATATCGACTCCCCCGTGCATTATATTGGCCTCCACTCCGGCTAAAACGACGAGCTCGGCACTTTCGCTCCACTGGCGTATCTCTCTGACGT # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //