Array 1 172911-173180 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGL01000013.1 Gilliamella apicola strain wkB112 Gilliamella_apicola_wkB112_contig20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 172911 29 100.0 31 ............................. CCTTTTTCAGAGGTTAGCCGATTCGCATTAT 172971 29 100.0 31 ............................. CAGTCAAAATTTTCTTAAATTCGTTTAATGT 173031 29 96.6 31 ............................A CAGCAGCTTGATTTAGATTCACTATATCGAA 173091 29 96.6 31 ............................C ATAGCATCTTTTTCGGTATCAGGCTGTTTAA 173151 29 79.3 0 .........T.............TCT.TG | A [173172] ========== ====== ====== ====== ============================= =============================== ================== 5 29 94.5 31 GTTCACCGCCGTATAGGCGGTTTAGAAAT # Left flank : TTCCATACGTTACCAGTTGCTTCTGCCATTGTTAATGCTTATTCATTTGGATTTGATGAATTTAAAGATCAAGCTACGGTACAAACTGAACAATGGCTACATAAACTCGTTGATTCAGTTAACTTACCGCGTGAAAAATTATCCTTTGCTATTGCCTTTGGTAATCCACGCGATGAAATTCTTACTATAGCCAACGAGATTGAACCAGATCTCATTATTATCGGTTCGCGTCGTCCGAATATTTCAACCCATCTTTTAGGCTCAAATGCTGCAGGAGTAGTGCGTGGTGCTAAAACCTCAGTTTTAGTCGTACGCTAGATTCCAATGCCAAGACCGTGATTTGTTGTAAACCAAACACGGTCATCTTAACCCTTTTTTATGCTTGGTTTTAAAGTCTAATAAAATCAATTAATTATTGATAGTGTTAAAAAAAGGGTTTGCCAATCAAAAATCTCTGTTTGCCTTTTGCCAAACAACGTTTATAGTATATACGAATCTAG # Right flank : GCTGATTTCGAGTTTTATAAATGTTTGATGATAAAACAGCAGTGAATTTGCTTGTTACGTTTAAAATCAAGGGACAGGGTTTTGCTGGTGATATCTTGATATGACAACCCAAGATTGTGCATGCCAGTGTCATCCATTTTAAAACCACGTTTATTGTTGGAAAACACAATAACGCCATTCGGTCTTAATAACCGTTTTAAATCAGCCATTAATTTTAAATGATCGCGCTGTACGTCAAAGGTGTCTTGCATCCGTTTGGAATTGGAAAATGTCGGCGGATCGATAAAGATTAAATCGAATTGTACATCACTTTGAGCCAGATAGAGTAAGCAATCAGCTTGAATCAAACGGTGTTTGTTGCCAGTTAAACCATTTTGTTTTAAATTGCGATCGGCCCATTCTAAGTATGTTCGTGACATATCGACGGTCGTGGTTGATTTTGCTCCGCCAAGGCCAGCATAAACAGTCGCACTACCGGTATAGGCAAACAGATTTAAAAA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGTATAGGCGGTTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 47322-47170 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGL01000005.1 Gilliamella apicola strain wkB112 Gilliamella_apicola_wkB112_contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47321 29 100.0 33 ............................. CGTTTAATTGATAAATACCAGGATTCATCAGAT 47259 29 100.0 32 ............................. AATCTGATTTAATTGCGAGTGATGATCGCTCC 47198 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 3 29 100.0 33 CTGTTCCCTATACACATAGGGATAAACCG # Left flank : AAGCATCTATAGCTGAACACAATACATTAAATTTTGAAAACGGTTACTGCCGAGGAAGTCATGATATATGGCAAAATAATATGGAGATTTCAACTCGCTTAACAAGTGATAATGTTGATATTTATCTTGCATATATCGAACAAGATACAATTATGCCATATTCAACAAATAGTAATTATGCTTGGGAACAAAGTCGTTTGACATTGAATAAAAGAAAATGGTTAAAAGTAGAACGTAATATCCCACAGCTTGACGAAAACCGTTTAGAAAAACTTAGAAAACAGATTCACCGCCCCAATGCTATTATCATCTTAATTGAAAAAGACAAAACCGCATTATTTTACTCAAAAGAACTAGGATTTTATGCCAATTAATGCTTAAATTTTAATACTATAACAATCAAATTTTTTCTCAATATTTATGATTAAAAAATCAGCTAAAAATTTGGTAGAATTTTGGCTCCTCCTATTTTAATTATAAAACAATAGGTTATAATTGGT # Right flank : ATTGTAAAAAATATTCAGGAATGTATACCGTTTCATTTAATATACTTATAGGATCCGACAAAATACTTAGTTACCAGATTTTGAAAAAATAAAGGCTATAAAACGCTTTAAATTGATACCAGAGAAGAATTCAAAACAACTATGCTTGTTTAACCAATGTTAAAATATTTAAAATAGCGGTTTTGGCTTGATGGCTATTTTTCCAACAGCTAGATCCGGTTAGTAATGCACCTTTGTTAAGAATTTCTTCTAATGAAGAGTTGCGTAATTTAGCAAAGGAATCGAGTTCCATTTGTTCAAGGCGCTCGATTATTTTGGCTCCAACAAACTTTAATGCCGCCAGTTGATTATATTCCTGTTCTGAAAAAGCCATAATTTCCCTCTTTAACAATGTTGAAATAAACTGTTTAAAATTATCTCAAATTGCGGTATGTAATTTTTTCCATTTCCTGATTTTGGTTCTAAATGATTTAAAAGGTGCGACTGAATTAATGTGAATA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 64896-65535 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGL01000005.1 Gilliamella apicola strain wkB112 Gilliamella_apicola_wkB112_contig13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64896 29 100.0 32 ............................. AACGTTCTACATTTGAACTCTATCTTATGTGG 64957 29 100.0 32 ............................. ACGATCTTTAAAGACAGAAAGTGAAATTCCTA 65018 29 100.0 32 ............................. GAACGTGTAAATGAAACAATGTTACCAAGCGG 65079 29 100.0 32 ............................. GCATTATTACGGAAGAAGAATTTCAAGCGCAA 65140 29 100.0 32 ............................. CCCTAGATCGCATCATGATCGGTTTTAATGGT 65201 29 100.0 32 ............................. AATTATCAAATCAATTATGGGATCGTGCCGAA 65262 29 100.0 33 ............................. TAGAGACCTATTGGATAATGCAGTACAAGATTT 65324 29 100.0 32 ............................. CTCGATGTTGGCGATCCATTCTCTTCAAGAAT 65385 29 100.0 32 ............................. GCAACTTACTTAAGTACAGATATAACGACGAA 65446 29 100.0 32 ............................. CGACATTTCACGAATATCTTGCCCCATTTGCT 65507 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GTGTTCCCTGTACCCACAGGGATAAACCG # Left flank : ATTAATTGAAGATGTGTTATCTGCTGGTGAAATTGAACCACCACCACCGCCAAAAGATATCCAACCTCCGGCAATACCAGAACCACAATCACTTGCGGATTGTGGTTTTAGGAGCCACTAACATGAGTATGGCTGTTGTGGTAACCGAAAATGTACCGCCAAGGTTAAGAGGGCGTCTTGCTATCTGGTTATTAGAGATCAGGTCTGGTGTCTATATAGGTGATATATCCCGACCAATTAGAGAAATGATTTGGCAACAAATCATTGAACTGGCTGAAGAAGGGAATGTTGTCCTTGTCTGGGCAACCAATACCGAATCAGGTTTTGACTTTCAAACTTACGGTACTAACAGAAGAGTTCCGGTAGATCTAGATGGTCTACGATTAGTCTCATTTTTACCTGTTTAAAATCAATAGGTTAAAGTTCTTTAAAAATAAGGAAAAGTTGGTAGAATTGAAGTGTTGTTATAACTTTAAATAAATCAAATATCTATGATTAGA # Right flank : GTCGACCAATTTTACCAACAGCAAACAGCAGATATGCCCCTTGTTAAATATTTTGTTCCTAAATTCATTATCGGTTGCAATTAATTCAGTTAATCAATTAGAAGATCTTAGCTATTATTACCTTAAATTATATAAAAAAGTTATTTAGTATCGATATTTTCTTAGACTATTACATAATAATAAAACAAAATTTTTTACTTTATATTGCTTGAATTATTTATCTTATGCTAAGTTTCGCTTAAGTATATTTTACTGTATGCAGAAATGAATAATTCAAATCATAAAATTCCGGTTGGAATTATTGGTATTATTAGTGCTATTGGTATTGTATATGGTGATATTGGTACTTCACCATTGTATGTACTCAAGTCTATCATTCATGGTTTACCAAATAATCAGTGGGCTGACCCTTTTTATATTTTAGGAGCTGTTTCATGTGTGATTTGGACATTAACTATTCAAACAACACTCAAATATGTGATCATTACTTTACGTGCTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTACCCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //