Array 1 14126-13489 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNG01000032.1 Gilliamella apicola strain A8 NODE_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 14125 26 100.0 35 .......................... CCGAAAATTATCCTGAGGAGTATAGAAGATTCTTA 14064 26 100.0 36 .......................... CCGGCATTCCGTGCGGTAATTCGTGTATTTCAGCAA 14002 26 100.0 35 .......................... CCGTTTGGATCTCGCCTCGCCACCATGTTTGACGC 13941 26 100.0 35 .......................... CCGATGGCACGGATGATGAAACCAACCTGCGGGCT 13880 26 100.0 35 .......................... CCGCGCATCAATTGGCGCCATTGCGGTTTGAATTG 13819 26 100.0 35 .......................... CCGATTTGGATGATTTTTTGGCAGATAATGAGTTG 13758 26 100.0 35 .......................... CCGAAAAAGAAACTTTTTACTACCTTCTATCAGAT 13697 26 100.0 35 .......................... CCGACCGTTTTATGGAGTTACCATTATTTCATTTT 13636 26 100.0 35 .......................... CCGACGATAATTTATTGAGACGTTTTAACGTATAT 13575 26 100.0 35 .......................... CCGTTGGCGCTCTAATTATTTAGAGAACGGCAAAC 13514 26 96.2 0 ......T................... | ========== ====== ====== ====== ========================== ==================================== ================== 11 26 99.7 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CTTATTGAAGAAGTTTTGTCCGCTGGTGGTATCGAACCGCCTCTACCACCTGATTATGTCCTGCCACCAGCTATCCCAGAACCTCAATCTTTAGCCGATAGTGGCTTTAGGAGTCGCTAATAATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGTGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTTAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGAGTGCCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : CTATATTCGTCATTTTGCAGGGCTTTCTGCAAATTGTGTAAGGATAAATCAGCTTTTACCTGATTTTTTATTTAACTGAAATCCTTTGTTGGATAAATTATTGCTAATTTGCTCTAAGTCAGAATGTTCAGTTTTTTCTGAAACATTAAATAATTGAGCAAAATATTATACAGTTTTGTATCCATTTTGTTTTATTAGCGGTTTATCTAAAAAAGCTTGTCTTTCTGTTAGTATTGGATACCTTCTTGTTCAATAACAACACAATGATTTGATTATAATTAGTTAAAATAGTTTTTATATCACAAAGATCTTCAATAACTTGTTGCAATGATGGTATTGGAAAACACAATAAGGTATAAAATTAGATTTAATTTTTGTCTAATATTTTTATACTTATTGATAATTTATTATAGGTAATAATAAGTTTTTGAGATTATTTGCCTTAAAAGCATGGATTATGGTAGATTTTTCTTATTTATTATTGATATTAAAATAGAAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18441-17862 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNG01000010.1 Gilliamella apicola strain A8 NODE_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18440 29 100.0 32 ............................. TCTAGACTATATCTTATATAAAGGATACCCCT 18379 29 100.0 33 ............................. CTTGCGCTATGTTGCGGGTCGCCGTCGTCGCCC 18317 29 100.0 32 ............................. GCGATTGATACCGTTTCTGATAACATGATTCA 18256 29 100.0 32 ............................. CAATTCAAATAATTATAGCAGATACGCCCGCC 18195 29 100.0 32 ............................. GGTGGCGGTTGTACTGTATTTGAAAGGCGCAA 18134 29 100.0 32 ............................. GCGGACGATTATAGCGGCGTAGACATGCCGTT 18073 29 100.0 32 ............................. TCCATGCAGAACAACCTATTGAAATTAAAAAA 18012 29 100.0 32 ............................. GCGTTTTCTCGTTTCTCCACGGACCAGGCGAA 17951 29 100.0 32 ............................. TTTCCGAAATGGCATGGCGTAAACTTACACCT 17890 29 79.3 0 ............C..........TTTT.T | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.9 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : AAATGGTACTAACTAAAAATCGGTGTTTAAGTCTAATTTATGTTAATTTTGTAACCGAACCACATAAGCAACCAATTCTAAAAATAGAGTGATTTTGATAACAACAAAGCATTAAAAACACCTCAAAAAAATCATATTAAAAACATTGAAAAGTTGGCGGAAATTTCAGCAAATGATTTTAGTTAATAAACAATAAGTTATAATAAGGACGTTCCCTGTATACATATAGATAAACCGTCGATGTATTAATATTGCATATCATTTTTTTGCTATTCAAAAATCGCAATTATGTATTTCATTGTTTACTTTTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTCTATTAATTTTAATTAATCAAATAAAAACATAGTGTTATATATTATGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAAGATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTTATGTAAGATTTTGCTAATTTTTGTCAAAAAGTTTCAGATTATGCCTATGTTTCAGTATAAAAACATCGATAATTAATTTAGTTTAATGGTTAATTTTTATACAAGCCAACGTATTATAAAAATGCATATCATTTAATGTGTTAAGGCATTACTATTGTAAAGACAATGGTGAAAGTAACGATCTGTTAGTTCTTGATGTTCATTAGTTATCTTCGTACAATAAAAAAAATTTTTATTTTGGTTTGTTATGCAATTACATTTAGTGGTTAATACGTTTGGTTCTGATTTGCAGCGTCGTTATGGAGAAAAGATCTATAAACTGACGTTACATGGTGGATTTAGTTGTCCAAATCGTGATGGTACTCTTGGTGTTGGTGGTTGCACTTTTTGTAATGTTGCGTCAATTATCGATGAATCTATCCAAGTCAAATCTATTTCTGAACAGCTTGCAACCCAAGCACATCAAATGAAAAAATCAAAGCGTTATCTTGCCTACT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22165-21892 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNG01000010.1 Gilliamella apicola strain A8 NODE_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22164 29 100.0 32 ............................. CAAAAATTAATAACAAAAATGTAGCATTTTTT 22103 29 100.0 32 ............................. TCTGATTTATTCTGCATAAGTTCCCTAAATGT 22042 29 100.0 32 ............................. GAAATTAAATTATCGTTCAACGGTACAGACGT 21981 29 96.6 32 ..............C.............. GCAGATGATAAACGTTTAAAACGATTTGAACG 21920 29 82.8 0 A.............C........T..T.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGTTCCCTGTATATACAGGGATAAACCG # Left flank : GCCCAAAGTACTGTGGATAATTCATCATCAGTCACTTGCCCAGCAGGGAATCCACCACCTGGCGTTGATACGCGTTTTTTAAGACTTTCAAACAGACTCATGCCATCTTTCATTTGCGGTGTCGGTAAATTAATATCGGCATAACAGAATGGTAAACAAAACAATGATAAAAATAGAATGGAAACGGTCTTCCGTAAACCCCAAGGCATAACATACTCCTGAACTTTCGGTAATAGCGTGGTGATATCTTATTGCTAATGATCACAATTATCAATATCAAATAATAATAATTATCATTTTTAAGCTAAATTAAAATTATTAAAATAATCAATATAGTTATTGTTAGCGACCGATTCGCTAATATCAGCTTTATAACATTAATTATGCTGTTAATAAAAATATCGGTTAAATCAAAATGATTTGATTAAAAAACAACCTAAAAAGTTGGTAAAAATTTTAATGCCACTATTTTAATTATAAAACAAACAGTTATAATTAGA # Right flank : ATAGTAGTCATAAATTTTTCCTACAGTGCTACAATTGGTTGGTATTTATAAACAAAATTTAGCCACGGTTATCGACCTGTGGAATGATTTGCGAGAAAAAACAAAATCACCTGATAAAAAGCAACTATACTCTATTACCATTACAAAATTGCAAGGCACGCAAAGGTGGGCAGTCAAGGTCTTAACGATTCAGATACCTGCTCATAACCAAATATCTATTTACACTCATTAACACAAAAAATCAGATTAATAGAGCTATGTTGTATAAACTATATACATATTCACAATAGATATAAAGACAATGTGAGGATGTAGTATGACCAAGCAAGTAGCTGTTTTAGGAGATATGACCAATTATGGTGGTAGGATTATCACAGCGTCAGGGAATGGCTATTGTGGTATGGATGGTGTTGCTCTATTAGGTGACTTGGTATCCTGCCCTAAATGTAGCAGTACTGGCAGAATCATTGAGGGAGCAAACAATTTTATTATCGATGGTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATATACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7876-6991 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNG01000096.1 Gilliamella apicola strain A8 NODE_96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7875 29 100.0 32 ............................. GTCAATTAGGTGGTTGGGTTGTTAATGAAAAT 7814 29 100.0 32 ............................. TTAGTTATGATGATAGACAACATTATTTTGCT 7753 29 100.0 33 ............................. CATGGCTAAACCTTTTAAGCAGATCCTCCAAAA 7691 29 100.0 32 ............................. AAATTTGATGAGGCATCACAATGACTAAACGT 7630 29 100.0 32 ............................. GTCGCATTACCTGTGTGCAACCATCATTTTTA 7569 29 100.0 32 ............................. CATAACGAATCTCCCATATTTCAGGTGTTGTT 7508 29 100.0 32 ............................. TCATTGATGCAGGTATAGGTTATACCTATTGT 7447 29 100.0 32 ............................. CTCAAATTGGCATTGAGACTGGGTAAAACGCT 7386 29 100.0 32 ............................. ACGAGTGACAAAATTTTAATTTATGTTTTATT 7325 29 100.0 32 ............................. AAATCGAACAATTAAAATCCGAAAACGCCGCA 7264 29 100.0 32 ............................. ACCGTTAGCGGCGGTGGTTTCTACCCAATCAA 7203 29 100.0 33 ............................. GATTGGCACTCGTGCAACGTGTAAAATATTGTC 7141 29 100.0 32 ............................. AGCGGCGTATCAACAGAGCAATTTGGCGCCAA 7080 29 96.6 32 .............A............... TTCAATGAGTTAGATAGGTTAGGAGAATGGAA 7019 29 96.6 0 .............A............... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.5 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : TCAGTATAAAAATCAATAAATAATTCAAATTAACTTTATGTTTATAAAGAAAACATAATATTTGGTTAATATAAGCATTTGTTTTAATATCGAGTAAGAGATTCGAAATAACAGAGTTTACTTAATAGCTTTCACTTAAAAAATATATTGGAGTATTTAAAGATCGTTGAAATGATATTAACTAAAAACGAGTATATGAATCATAGATTATGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTAAAAATAGAGTAATTTTGATAATAACAAACCACTAATAACATCTCAATAAAATCTACTATTTTTTTAACTAAATGAAAAATATAAACTTATCGGTAGAATTCCGTAGAATCTAATTTAAATTCCATCAACTTTAATTACTTAAATAAAAACATAATGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTAGCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : CTTATTTAGCAACATAATCAATGGGTCCATATTGGTTTTAGTCTGAATAACAACCGTTAAATCGTGTTAACAGCAATCAAACAGGGCGGTAAAACTGTTTACGTGAATGGGTTGATTTAAATAACTGTCCACAAAAAGGATAATACTATGTTTAAACGGCTTGGAATAATCAACAGAAAATCATAGTGAGATAGTGTTAATGTCTCATGGTAATGAGACAATTTTGTTAGTTGTAGAGACGTATTTATTTGAAGAGATAATTGCATCATGGGTCATAGCAACATTAATTACCATATCTATTTTTTGTTTATACGCAAAATATGTTAGTCCTGAAATTTGGAATTATATAGTCGCGTTTTTATTTGGATGATGTATGAATAAATCAAAAATATTAGGTGCCGCATTAATTGTCGTTATTTTTGTTCTAATTATTTATTTCGGTTACAACAATTATCAGGAAAAAATAGACTCAAAAACGATAAATTAGAATTAACCAATAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7753-6625 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNG01000099.1 Gilliamella apicola strain A8 NODE_99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7752 29 100.0 32 ............................. CTAACCCGATCAATTAGTTTAATTGTAAAATC 7691 29 100.0 33 ............................. TCCATCGCGTCAGCCCAACGACATGACCCTCAC 7629 29 100.0 32 ............................. GAGTTAAAAAATGGACGAAGACGAATAAGATA 7568 29 100.0 32 ............................. CGAATAGGTAGGTGATATGACAGAACACGCAT 7507 29 100.0 32 ............................. CCTTGACTCACCTAGTAGACATGGTCTAAATG 7446 29 100.0 32 ............................. TAATGAGTTACGCTCATATGTGCTTTGGGCTA 7385 29 100.0 32 ............................. GGTTTAGTCGTCTTGAATCGTGGTGGGTCGCC 7324 29 100.0 32 ............................. CATTTATGAACCGTTTCCACTCCCTCTAAATA 7263 29 100.0 32 ............................. AAATGTTAACAATTGTCTCTTTTGTTTCTTAG 7202 29 100.0 32 ............................. GGTTCACATTGGATTTAGTCCGAGCAATAACC 7141 29 100.0 32 ............................. GGTTCACATTGGATTTAGTCCGAGCAATAACC 7080 29 100.0 32 ............................. CGTTATGTTGAATTTGTAGGCTGTATACTGTT 7019 29 100.0 32 ............................. GGTTTTGGATACTGATAAACAGCAACAGCACT 6958 29 100.0 32 ............................. AAATTGAGCGAGTACTGCGCGACGTTGGACTC 6897 29 100.0 32 ............................. GGTACTGCAGATTGGTGGAAGAAACAATCAGA 6836 29 100.0 32 ............................. CTTAGAGCTATGGCTAACAGATTATTTTGAGG 6775 29 100.0 32 ............................. TATGTTCACTAAAGGATTTGAAGGTGAAATAT 6714 29 96.6 32 ............T................ TCCTGTAAAATATTCGTACACAGTTAATGGAG 6653 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : ACTTGGTAGAATCCTATGAATATTAATTTTACCTACCGTTAATTTAAATTAACTCAATAAAAACATAGTGTTATAAATACTAATTTTATTACAAATTAACCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGG # Right flank : TTCTATAAAGCTGGTTAGTCAGACTAAGAACGAAGAATTGGCTAAAATAATTCACGAAATGGATTACATCCCGTGGACAAATGTGTCAACTCCAAGAGGTGTTTATGCTCATGAGATGGGGCACGTGTTACATTATCAATATAAAGAAGATATGGATGATATTATCAAAAAATCATAGGGCGAGCTTGGGCATATGCAATTAGTAATTATGCTCTACATAACAAACGAGAATTTGTTGCTGAAGCGTTTTCGTTGTATATTGAAAATCACATAGAAGCTAAAAAGAGACTTTCTCCAGAATTATTTAAACTTTTCGAATCACTAGATAAGGATATTAAATGAATAAGTTTGATTTATTAGTTGAGCAAGCAACTGAACTGATTAACACCGAGCCACTTCCTGATGATGCAGAGGAACAATTGCAAAAAATTATCGACCAAGCTGACGACAAAACGGAAAGACACATGTTAGGTAGGCTTGCTGAAGCTCTGTTTGTTATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3927-4870 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNG01000122.1 Gilliamella apicola strain A8 NODE_122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3927 29 100.0 32 ............................. GTATTAATAAGAAAATGGTTGTAACCGTTCCG 3988 29 100.0 32 ............................. ATATCCGTGCACATACACCAACCTAGATTAAA 4049 29 96.6 32 ............................C ACAACCTGTTACGTATAATGTTGATTTAGTGC 4110 29 100.0 32 ............................. ACGTAATCGAACTGTACCAATCACAAAAGATC 4171 29 100.0 32 ............................. TTTCTGTATGATCAGTATCACGATTGAGATTG 4232 29 100.0 32 ............................. CTGTCGAACGCTACACATTGCAAAAATTAAAT 4293 29 100.0 32 ............................. GATGTTAGTATTACCAGTCATTATTGATCAAT 4354 29 100.0 32 ............................. GCAACATCGAGCACGAGGGCGAGACACAGCAA 4415 29 100.0 32 ............................. AATGCCCTGAATGCAAATTTATGAAGCCGATC 4476 29 100.0 32 ............................. TTCAATTTCTTTTTGATTATTATCATAGAAAT 4537 29 100.0 32 ............................. CTGGACATCGGCATGATTGAAATTATTCTACC 4598 29 100.0 32 ............................. GGCGTTAGAAAGCTATTACGTCTGGAAATGCC 4659 29 100.0 32 ............................. CGTGGGATGATAAAAACGGTTGTTGGCGAGAT 4720 29 100.0 32 ............................. GATGTTAGTATTACCAGTCATTATTGATCAAT 4781 29 100.0 32 ............................. CGGTCCAACATTAGAGACCGTGTTGGTTTTGT 4842 29 89.7 0 .......T..................TT. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.1 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : GTATAAAAATCAATAAATAATTCAAATTAACTTTATGTTTATAAAGAAAACATAATATTTGGTCAATATAAGCATTTACTTTTAAAATTAAGTAATAGATTTGCAATAAAAGCCTTACATAATGGTTTTTACTTAAAAAAATATAGTTGATTACTTTAAGATTGCCGAAATGATATTAACTAAAAACGAGTATATAAATCATAGATTATGAAAAATTTTGTAACTAAGTTACACAAACAAATCACTCTAAAAATAGAGTAATTTTGATAACAATGAAGCACTAATAACATCTCAATAAAACTTACTATTTTTTTAACCAAATGAAAAATATAAACTTATTGGTAGAATCCCGTAGAATCTAATTTTAATTTCCATTAATTTTAATTAATCAAATAAAAACATATTGTTATAGATTGTGATTTTAATGAAAAATATTCTAAAAAATCGGTAGAAATTTGACAGCCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GATTGGGTGCATCGATTCTCTCGATGTTATTGTATATTCCCTGTATATATATGAAAAATTAGAAGGTATTGTTATAAAAAATAAACGAGCAAAGTTGTTTTTAAAGACAATATCTGATTTATTAAGATTAGCTGTAAATGTTTTTCTGAAACACAATAAAACTTAATCTAATATTAACCAACGATTGTAAGGAATTGATATGAAAAAGATACTAATGTTAATTACCGCTCTATTTTTATTCGGATGTGACAGGACCTATACTGTGGAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 429-1129 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNG01000123.1 Gilliamella apicola strain A8 NODE_123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 429 29 93.1 32 A.A.......................... TCCTAACCGTTAGGGAAAATTTTGTAAACGCA 490 29 100.0 32 ............................. CAGTTTGCATCGATATCAGAAGGGATTTAATG 551 29 100.0 32 ............................. GGAATATGGTTTCGGGTTCGTTAGCATCTCTG 612 29 100.0 32 ............................. TAATTGGTTTTTAAATGGCGAGCTTTGAATGT 673 29 100.0 32 ............................. ATATTGTGTCGATATTAAAAGCAAAGCCAAGC 734 29 96.6 33 A............................ CAAAAAGCGACGATATATACTTAAACCTTTAGC 796 29 93.1 32 A.............T.............. AGGATCCTCACCTAGCGCATATGTCCTCATAA 857 29 96.6 32 A............................ AGTTCGATCAACCGACTAATGATATTACGCGC 918 29 96.6 32 A............................ AAAATCACGAAGTTTTACCAGTATCAGAACAA 979 29 93.1 32 A............A............... CGTCTATCCTCAATATTCTAGTGGTGGTTTTA 1040 29 93.1 32 A............A............... CCACCAGTCGTCCTCACGCTCATAGTCTGGTA 1101 29 89.7 0 A...................A.......A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 96.0 32 GTGTTCCCTGTATGCACAGGGATAAACCG # Left flank : GTGTTTACTTGTAATGTTGATTAATAGATTTGAAATAACAAAGCTTAAATAATGGTTTTTACTTAAAAAAAATAGTTGATTACTTTAAGTTTGCTGAAATGATATTAACTAAAAACGAGTATATGAATCCTAGATTAGGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTAAAAAATAGAGTAATTTTGATAACAACAAAGCACTAATAGCTTCTCAATAAAACTTACCATTATTTTAACCAAATGAAAAATATAAAATTATCGGTAGAATTCCGTAGAATCTAATTTTAATTTTCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAGAAATTTATCAGTCAATATTTTAATTATAAAACAGTATGTTATAATAGGA # Right flank : AAACGGTCAACATATTCAGACGTTTTAATCATATGCACAGGGATAAAATACAAATCCACTACCGCCTTTGTAGCGGTTTTTAATTGACCTAATGGTTAAATAGCATACCATTACCGAAATTTAATTATTAAGGGAATGGTATGAAAAAGATTAAAAAACTTTTATGAAGCTTTTTTGTTTTCAAGATAAAATTTAATTGCATCAATAATCAGTTGCGCTTGAGGTACCTTTAATTGATTGCTTGCTTCCTCAATTAATGCAATATCATCTACATGAAGCTTAAAACCTTTTGTTTTCACACCTCGTTTTTCGTCACTTTTTTTTTGAATTACAGCCCTTGTTAATGCCATATAATCACCATGATTTTTAAATAAAAATTGTTATATTTAAGGCCGCAGGTGAGGACTGCAACCTTCAACCTTTGAAGCAGTTTTAGTAAACTGTACAACTTCAGATTATTAAAACTACGAGAATTAAGATTCTGTTCTTCTTGTTTCTCC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //