Array 1 1576111-1581397 **** Predicted by CRISPRDetect 2.4 *** >NC_017095.1 Fervidobacterium pennivorans DSM 9078, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 1576111 30 100.0 42 .............................. GATTTTAGAACATGTTGAATGGAGAACAAGTTCAATGGTCAG 1576183 30 100.0 39 .............................. TAAATAATCCTGTCATCCTTAAACAGACTATACACAAAT 1576252 30 100.0 36 .............................. GGTTTGTAAGCGGATTCATCGGAGGATGGTATGCGT 1576318 30 100.0 39 .............................. CTTACAATATTGGTTAACATAGATAAATATCTTCAACAA 1576387 30 100.0 37 .............................. GGATATGATCAGAGGATCACTACTTGATAACGTATTT 1576454 30 100.0 44 .............................. AAAGGTTCGGTATTGAATACCGGACCACACCAAGGAAGACTATA 1576528 30 100.0 37 .............................. TGAGGAAGGTAAGATTCTCAATGAGGATGAGCTTAGA 1576595 30 100.0 43 .............................. TTTTACAGTAAGGAATTATTCACAACAGTAAGTAGTTACATTG 1576668 30 100.0 43 .............................. CCGTCAAAGAAGCGTTCTACTTTTTCGACTTGCATAAGCACGG 1576741 30 100.0 41 .............................. CTGGAAGAAATCGCGGTTTGGTATGTTGGAGCAGTTGAAGA 1576812 30 100.0 44 .............................. AGGTGGGTATTTAGAGGGTTTAATAAAGACTTCGGTAATTGGGC 1576886 30 100.0 37 .............................. TTTCTTGCTTCTCTTTCTCAATCTTTCTCATCGCTTT 1576953 30 100.0 40 .............................. AAAAAACTAGATGTAGATTTAGAAAAGTATGATATTTCAA 1577023 30 100.0 42 .............................. CTCTATGCCTACGACGGAGAAAACGTCGTAGAAGTTCCACGT 1577095 30 100.0 37 .............................. TCAAGTCAAGGCAAAAAAATCAGCTGTACGATTGGCT 1577162 30 100.0 42 .............................. CGGACGGTATATGAGGGATAAAAGCGATTTCTTCAGGTACTA 1577234 30 100.0 44 .............................. GAAAATACTTGAAGGGTTAAGAAGTTTAAAAAGTCAAAAAGCCA 1577308 30 100.0 37 .............................. TTTCTTGCTTCTCTTTCTCAATCTTTCTCATCGCTTT 1577375 30 100.0 40 .............................. AGTGGAAAATTCCAGGAAAGGAACAGCCAAAGCTAAGAAT 1577445 30 100.0 41 .............................. GATAGTATGGTGTTAGGAGGAAGAGTGTCGGTGGAAGTCTT 1577516 30 100.0 41 .............................. TAAAAATGGCGAGGGTAAACTCGCCCTCGCCATGGCAATTC 1577587 30 100.0 39 .............................. CCTGTACAGTGACAGCGAATTAGCTTTCGTAGACAATGT 1577656 30 100.0 39 .............................. TGTATAGGGTGTTCAGTAAAAGATATTTTGATGTTGATA 1577725 30 100.0 38 .............................. TGGTGTTGGGAGGTAGGATGGAGATCACAGTGAGATTT 1577793 30 100.0 41 .............................. TGCCAAAGTCGAAAAGGAGGGCGAAAGTATGAAGATTACCG 1577864 30 100.0 43 .............................. CTGATATACAAGCTATTGCAAACGAAACTTTTTACAACACAAT 1577937 30 100.0 42 .............................. GGTTGAAAACTACGGCTTGTTGTTAAATGAATGTGTAGATTT 1578009 30 100.0 43 .............................. TGAAAACATACGGTTCGCTTGAATTTGGTCGCTACCAAGTGGA 1578082 30 100.0 44 .............................. TTACAAGTGATAAGACAAATCAGTTAGGTATACTCGAAGCAACG 1578156 30 100.0 40 .............................. GAAGGTAAAATCTGAAAATTATTTTGAAGTGAAAAAGCTT 1578226 30 100.0 33 .............................. TTTCCCACTCATCATATTTGTCTGGGTCAATCC 1578289 30 100.0 44 .............................. CAGTTGTTGCTTGCTTTCGCCGTCCTCCTCGGGTTAAGCCCTGA 1578363 30 100.0 37 .............................. TAACCATTCGTTAAAATACCATAGTACGAAACCTACG 1578430 30 100.0 43 .............................. GGTGACAAAGCGCTTTTGATTATTGATTCAATGTACTCAAGAG 1578503 30 100.0 43 .............................. TAAAACTATAAGAACGAACTATTATGATTCAGCAAAACTTTAT 1578576 30 100.0 40 .............................. AACTAGTGTGTATCCCCGGGGAAAGATAATGGAATAGTCT 1578646 30 100.0 40 .............................. AAGTTAATAGCTTAGCGATTTGAAACCTGCCGGATTTCTT 1578716 30 100.0 41 .............................. GGTTGGCTCCAGCGAGAATATCGTGGTTTCCGAAAAGATGC 1578787 30 100.0 42 .............................. GTGTGAGTGTGACTTCAAGGGAACTCAGGTTTTTAGAACGGT 1578859 30 100.0 42 .............................. ATGGAAGTTGAAGGTGCAAACTATCAAGGCTCAAGCAACATA 1578931 30 100.0 34 .............................. TTTACGTGGTAGAAGGTAAGAACGGGGTGTATAG 1578995 30 100.0 44 .............................. TTTGAAGATTTGGAGAGGGCTGTCGAGGTGAGTAATATGGGCTT 1579069 30 100.0 34 .............................. TATCATTACGATTAGTGACGTTCAACAATTAAGA 1579133 30 100.0 39 .............................. GTTATTGAAAAGACAAATGAAGGCTACGTTGTTCGTTTA 1579202 30 100.0 39 .............................. TACAAATTGTCCGATAAGGTTTGAATGTGCGGAATTCGA 1579271 30 100.0 37 .............................. TAGTAGGGGAGTTCGGCGTTTACAAACTACACAAAGA 1579338 30 100.0 36 .............................. TGTATCTTCAAACAAGGAGGTGATTACATTGCGATT 1579404 30 100.0 40 .............................. TGGATCTAAACGAGGAGGAAGAAAAGCAGTTAAACCTTGC 1579474 30 100.0 43 .............................. GATTTTTTCTGGTTTGAAAGTGATACAATCGCTGAATGGTTAG 1579547 30 100.0 44 .............................. AAAGAACTGGTACAACATACGTAAGTGAAGATGGTAGCGTTTTC 1579621 30 100.0 40 .............................. TCATACGAAACTGGAATAAGCATTCAAAAAATCGAAAAAA 1579691 30 100.0 43 .............................. TTGTTGAAAGTCTGAATCCTGCAACGCTTTCCGGAAAGCTTAC 1579764 30 100.0 36 .............................. ACGAAGATACCAGAGTGTATGTAGAAGCGTACGTAA 1579830 30 100.0 42 .............................. TTTGAAGCTTTACAAAGACGATGTTTATATTGACTTTTTCAA 1579902 30 100.0 38 .............................. TTATTCCTAAGCCAGATGTTTCGGGTTGGAAGGGGGGA 1579970 30 100.0 42 .............................. GGGCTATGTTTGGTTCTCTTGTGCAAGCGGCATATAGTAATT 1580042 30 100.0 40 .............................. AGTTTTATGAAGCTGTTTTAAAGTATTTTGAGAATACCGA 1580112 30 100.0 39 .............................. ACCCCACGTCGGCGGCAGGACGTGGGGGGGTATGGGAAA 1580181 30 100.0 41 .............................. CAAGTTGAATGCTGTGCTATCCTGCATTAATTGGTATGATA 1580252 30 100.0 39 .............................. ACACTTCTAAGCTTCGCGGCTTTGATAGAGTCAGCGTTA 1580321 30 96.7 40 .........T.................... TGGAAAAGGTTCGAGTCAACACATTTTATGGCGAACTAAA 1580391 30 100.0 43 .............................. GGGAGGTATGATTATGGAAGAAAAAGTTCAAGTGGAAAACACA 1580464 30 100.0 37 .............................. TATACTCATGTCTTGTTACTCCCTAAATGCTTTATGA 1580531 30 100.0 47 .............................. CAATCCCGAACTGAATAAAGTTTTGCCAATCATTGGTGTTTCTCGCA 1580608 30 100.0 37 .............................. AAACGGGAGGTCGGAAAAATGTTGCAAATACCCATGA 1580675 30 100.0 37 .............................. AAACGGGAGGTCGGGAAAATGTTGCAAATACCCATGA 1580742 30 100.0 40 .............................. GAAGTTTTTATTTTTTTTACACACGTAATACACGTAATAC 1580812 30 100.0 38 .............................. GAAAACTTACTTATGTGCCCTTCCAAGCGGAGTTTGAT 1580880 30 100.0 41 .............................. GCATTTTATAGTTGGTTTGTGAATAACTATTTAAATGGCGT 1580951 30 100.0 43 .............................. AGGTTGAGATGAAGTTGCATCACGATGGGGGGTTAAATTGTGA 1581024 30 100.0 42 .............................. TATTACGTTGACGTTTAGAGATGATGTTTCAGATAGTGATGC 1581096 30 100.0 36 .............................. TAGTTTCTCAGTTAAAGCCTGCTCCGTACAATCCAA 1581162 30 100.0 41 .............................. CATCAACAATCAAATCAGCAATATAAAAGAAGGAAAATTTG 1581233 30 100.0 38 .............................. GGTGATAATAGACGTCAAAACGTACTATCCGAGTAAAA 1581301 30 100.0 37 .............................. CCTAACCAAAGAAAAAAAATGGAGGTGTTAAACATGG 1581368 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================================== ================== 76 30 100.0 40 GTTTCCATCCCTCATAGTCACTTCTAAAAC # Left flank : GAAATTCAAACTCCGAAAAGATATGTGAAGGAAGGTAAGCAACTGCCAATCCTGATTTGTTACTTTGTTTGTCATTTGCAATAATCTCTTTTTCTGTCGCTATTCTTTTGTTTATTATTCTCAGAAGCGTGGAATCTACGCTGTTGTGGAGTACATTCATCCAGTGTCCTCTAACATATTCAAATGAAAGCTTACAACCCAAATGCCTGACAATTTCACGAAATTGTGCGATTAGTGCTTCTTGGAATTTTTTCTCCTTAGTAGCATCAGAGTTTTTTTCACTACTATTTTTTTGGTCAATTGAGATATAAATTTGATTTTTAAATGCATTTCCATAAAAGTTTCGAACCTCGGTTAAATCTGAGGCAATTACTACTCGTTCCCCTTTCAACGAACAATATAATTCCTTCAGCTTCGTTAATGCAGCCATGACAGCAAGAAGTTCCGCCTCAACGTTTTTCAACGAAGTCTCTGGACGTCTTAAACACAGGTATTGGATA # Right flank : CTCGTAAAACCCTCATAGATATTATACTACTATTTTTGTTAAATTTGACAGTTACATTTGTAAAAATTAAAAATCTCGTGTTTATGCGTTTTTAGGTTAATCGTGACCGGGAACTATCCCCCGAAAAAATGGCTAAATTTTGTGTGTTTACATAATCGTTACAATATGTGTTTTGGGCAAGTATTATTAGTGCGGTTTTAGGAATTTTATTAATGATATATGAAGGTAAGTTTGGAATTCCTGGCATTTTTTGTTTGCGTTTAAAATAACCTGTATTTTTAGTTGTATTGCAATTTTATGTATTATGGTATATGTTTTTTCGAATAAGCTGTATTTTCAAAGATTTTGGTAAATATGTTTTTCAGAATGTGAGAATGATTGTGTTACTGTTATGTTCTTTCGTGGTATGTAACAAAAAGATGTGATGTATACTAATAGTGTAATAAAAGCTACGTGCAAGGTGTAAATTTGTCAAGTGAGCTAAAGTAAAATGAAACTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCTCATAGTCACTTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 1593811-1593425 **** Predicted by CRISPRDetect 2.4 *** >NC_017095.1 Fervidobacterium pennivorans DSM 9078, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 1593810 28 92.9 42 T...................A....... ACTTCCAAATCCCTTTGTATTTCCTGTTTGCCATCTTCTTGA 1593740 28 100.0 43 ............................ GCGGTGTTACTTTCACAGCTTTAACTAGTAGGTTTATCTCAAT 1593669 28 96.4 45 ................G........... ACTTTGTTCCCTGTTCTACCAAATTCCTAAGTTTCCTTGCACTTT 1593596 28 100.0 43 ............................ ACATTATTAAGACGAAGAAAAGAGGAAAACGGAAGTATTTGAA 1593525 28 96.4 45 ......................T..... TCTCGATATAGTATAATGATTAGTAGCACCTTATATTGACGTCCA 1593452 27 82.1 0 ..........A.G...-......A.C.. | G [1593431] ========== ====== ====== ====== ============================ ============================================= ================== 6 28 94.6 44 GTTTTAGAAGTGACTATGAGGGATGGAA # Left flank : TTAGAAAAATTTAAACAAATAAAAGCCAATCCTCATGGATTGGCTTTTTTTGTGATCGCTTAAGTCATTTCACAGAATCCCATCCTTTAAACCATACCCCTTTTGGTTATCACAATATTAATATTATCAACACCTATTTGTTACTAACTATGTGAACACACAACAGTAACACATATATCCAAAATTCAGAATAACTGTTTTGACAAATCAATGTACAAATAAATATCACAATTATCCAATAAGAAAACAAAAAAACGCACCACATTCAAAAGATACATTCATACGCCGTTAGCCACAATCCTAAAATTGCACTATACAAAACGTCTAAAATATCATTTGTAGCGATTATGTAAATTCACAAAAATTAATCATTTTTTCGGGGGATAGTTTCCATTCGTGTTCAACCTAAATAGTTATAAATACGAGCTTTTCAATTTTTACAAATGTAACTGTCAAATTTAACAAAAATAATGGTATAATACTTATGAGGGTCTTACGGT # Right flank : GCAAAATTGCTTCCTTTATTTGTTTTGCAATGAGTGTCGTTTTGGAAGTCAGGATAAGGTATATAGACGCAGGCTGGCGTTTGATAAAAGTTTCTTTCCACGCGTTTTTCAAAAACAGTTGTGTTTGGTAAGAAGGTTTTGAGTGTGGTTGTGTTGAAAGATTTAGGCATGGAAAGTTAGGAGTTTTGTAAATCCAACTGTGGAGGTATCGAATATGGTAAAGGTACTTACGTTCTTGGGAACAAGTTCGTATCAAAAGGCTATAGTTAAGTTTGATGATTTTGAAACATCTCAGGAGTTATTCCCACTTGCTTTGTTGGAATTTTTGAAGATGAAGGAAGGCAAGGATATCTCAGCTGCGTTTTTCTTGACTGAGGAAGCTATGAAAACATACGATAAGTACAATGTTGAACGGTTTTGCAGTGAAAACGGCATCAAAGTCCAGAAGATTAAAATTTCGGAAGATGAAAGCGTAACTGATTTTGTACGAAAGGCTGCGG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTGACTATGAGGGATGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 1609470-1612344 **** Predicted by CRISPRDetect 2.4 *** >NC_017095.1 Fervidobacterium pennivorans DSM 9078, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 1609470 30 100.0 39 .............................. GAGTCCAAGAAATAGCTTTCAATAAGATTTACACTCTGG 1609539 30 100.0 45 .............................. AACTGGCTCGTCAAGGACCATACCTCGATAATCAACTTTCCACGA 1609614 30 100.0 36 .............................. TAGAATCCCCTCCTTCATAATCAATAGCCAGTTTTC 1609680 30 100.0 32 .............................. CACTGTCTTTCATCTCCAAGCCGATGTAGATA 1609742 30 100.0 37 .............................. GTGTAAAATCTGGTGGGATACGTTTTTGAACTCTTTC 1609809 30 100.0 36 .............................. AAAAGTTACCGTCTGTGGCTCTACGCCGTACAATCT 1609875 30 100.0 35 .............................. AGAATCCGTCTACCACTTTTATCTCCGAAACTCTG 1609940 30 100.0 37 .............................. CTTTCACCACTATTTCGATGTACAGTCTCTTCATAAT 1610007 30 100.0 40 .............................. TTACCATACTGTCTCGCCTCAACCCCTACTCTAATTGAGG 1610077 30 100.0 40 .............................. CATTCAAATTAATTTGTCAATAGTTTTTTACTTGTTTTTG 1610147 30 100.0 36 .............................. AGCAGAGAGGATAGTGAAAAAAGGTGCCCTGCATAA 1610213 30 100.0 40 .............................. CAACGTCCGACTCTCGCTTTTCTTCAAAGAAGTACGACTG 1610283 30 100.0 39 .............................. CCCCTCCTTGAGGATAGTTTTTTCTTTTTTTGAAAAAAG 1610352 30 100.0 38 .............................. CTCAGAAGACTATTCACTTTTCAAAGGCCCGCCCGTTC 1610420 30 100.0 42 .............................. TAAAATTCGTGTTACCTTTAATTCTCTTTGCCATGTGGTACC 1610492 30 100.0 39 .............................. CTGATTTGATTGTTGATGTACCGTTGCACTTCTTGCCGG 1610561 30 100.0 39 .............................. TGTTGACCGTTCACCTTCACTGTAACTTCAAGATACAAC 1610630 30 100.0 34 .............................. TCTCATCAAACTCCGCTTGGAAGGGCACATAAGT 1610694 30 100.0 43 .............................. ATTTCACGAATGTCAGCAACGGTTGGCTGTTCTTTGAAGGTGG 1610767 30 100.0 42 .............................. AAAGAACAGGATGTAAACATCCTTTTCTTCCCATAATACAAA 1610839 30 100.0 36 .............................. CCGCCGCGTGGGGTGTCACCTCCTTCTTCTTTTTTT 1610905 30 100.0 40 .............................. TAGCGTCAGTAACACGATAGTTGAATAACGGTCTTTTGTT 1610975 30 100.0 37 .............................. GGCGTCAACCCGAGGACGATGGTGAAGGCGAGCAATA 1611042 30 100.0 40 .............................. CCCAACCCTTCCAAACTTTTACCTTTGAGCTGTCCTCCAA 1611112 30 100.0 38 .............................. AATCCACTTGACTTGACAAGTACACTTTTGTACTCATC 1611180 30 100.0 38 .............................. AAAAAAGGCTGGCTTTCGCCAGCCTTCAATCTATCAAA 1611248 30 100.0 42 .............................. CATACGGATAAACTGAAAATCTTTTGGGGTGCAGCTCTGTTA 1611320 30 100.0 40 .............................. CGTGATCCGGAATATGCACTCTCATTCGCCTAAATGCTTG 1611390 30 100.0 45 .............................. ATAAAAAAAAGGCGACGCTTTACACGTCGCCTTCTTCAGCCTCCA 1611465 30 100.0 44 .............................. AGGCTGTCCTTACTTTTTAATCCTGACATGATGAGCTTAGGAAT 1611539 30 100.0 44 .............................. TGTTGTTTTACTTCTTGTTTTATCTCTTCCTGTTTTGCTTGTAC 1611613 30 100.0 40 .............................. ACAGATCGTAAAGTCTTTTCTTGATGTACATAACATACCA 1611683 30 100.0 41 .............................. CCAACCGTGGATAATTCTCGAAAAAAACGCTGCCGATTGGG 1611754 30 100.0 41 .............................. TTTTATCATCTGTTTTCGTTGTTTTGAATTTTAGGTATTCA 1611825 30 100.0 42 .............................. TCGTCTAAAAACCACTTTTCACTAACAACTCCCATTGGTACA 1611897 30 100.0 39 .............................. AAAAACCCCTTCTTTCTTTTTTTTACTCATCATCAATGA 1611966 30 100.0 41 .............................. TCTGTAACACTCTTTGGTTTAAATCTTACAGCAATCAACAG 1612037 30 100.0 41 .............................. ACTTCAAACAGTTCCGCTACATTTTTCGGTTTGAATTTAAC 1612108 30 100.0 41 .............................. ATAATCCTTTTTATAACTTCACTTTTCAACATACCTACCAG 1612179 30 100.0 41 .............................. TTCGCTTCAGCGTTTGCTCTGACTGTTGGATTTATTTTTTG 1612250 30 96.7 35 .........T.................... ATTATTCCGTCTGGAACTTGCCCTGTTTGATCGAA 1612315 30 86.7 0 .....................AG.A..G.. | ========== ====== ====== ====== ============================== ============================================= ================== 42 30 99.6 39 GTTTTAGAAGTGACTATGAGGGATGGAAAC # Left flank : CATTCCGCACCACAAATAGTCCACACACCTCTCAAATAGAATACCAGCTTTAAGTCGCTATCATTTCTTCCGTTTTGTTAATACATTATTTATCTATACATCACCTATTTGTTACCTGATTTTTTCTTCTCATCTGTAATTTTTCTTATCCAACACTTAATTCAGATTTTTTATTTCATACCAGCTTTTTTAGCCATTATACATCAAATAATAAAATTTTATTAACTCCAAAACAATCTTTCTGCAATCTTTTTAAACCCTCTTTTCCCGTTTTTACTTCATATTTTATTAATATTTTTTCAAAATCCTCATAAATACATGCCGCATTTTCTGCCCTTTGTAACGATTATGTAAACTCACAAAAAATCACAGATTTTTCGGGGGATAGTTTCCATCTATGTTCAACCTAAATAGGCATAAATACGAGCTTTTTAATTTTTACAAATGTAACTGTCAAATTTAACAAAAATAATGGTATAATATCTATGAGGGTCTTACGA # Right flank : CAATCAACTGAAGCGCTCGTATGCTTAAACGTTATTTCAGCAGAAGGAATAAATAGAAACAAAAAAGACCTCTGCAAATGCAGAGGTGCAATTTTTTTTGTTCTTGAACTTGAATGTACAGTATTAAATAAAAAACCCCAGTGAGCTTTTGCCCACTGGGGTTTGTTTTTATTGTTTATTACATCTGCTCGCTTGTGTTTGTTCCACCTTGAGCTTGTTGTTTGTAGAGGTATTCGCCTATTTTCATGCTTTCTCTTTGCAAGTCGTCGAATAGTATCTTGACTTTTGCGATGTCGTCTCTGTTGATTGCATCTCTCAAGTCCCTAATGATTTCCTCTAACCTGTTCTTTGTATCTGCCGGTATCTTGTCGCCGTTTTCTTTGAGTACTTTTTCGATGTGGTAAGCAAGGTCGTCTGCTTTGTTCTTTAGTTCGACCTCTTCGCGTTTTCTTCTGTCTTGTTCTTCATACATTTGCGCTTCTCTAATCATTCTTTCGATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTGACTATGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 1767917-1768716 **** Predicted by CRISPRDetect 2.4 *** >NC_017095.1 Fervidobacterium pennivorans DSM 9078, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 1767917 30 100.0 41 .............................. TTATTGAATATTCCGGCATATACACTGTGCCAATAGCAAAA 1767988 30 100.0 39 .............................. GTCTTAACCTCAACGACGGCATCCTCTTCAGGAATGTAG 1768057 30 100.0 34 .............................. GGCATTCCTCTACGAGTAGTACCTATCTCATAAT 1768121 30 100.0 37 .............................. CAGTCCTTTGAGTTTGATTCCTTCTACCTCTAAAATC 1768188 30 100.0 41 .............................. CAAGCCTCCCTTTTCTTTCTTGCCCGTTGACCCTTACCACG 1768259 30 100.0 37 .............................. AGAAAATTTCATTTCGATACACCTCCTTTTTTCTTGA 1768326 30 100.0 46 .............................. GCATAGGGTATCGATAGAGCATCAACAAATTCGGTAAATTGTTTAT 1768402 30 100.0 43 .............................. TTTGTGGAATTTCGTGAATACTCAACATACTCCCATCTCCCTT 1768475 30 100.0 40 .............................. TCTTTTGCAAGATTTCTGATTTCATATAGGCTCTTTTCCA 1768545 30 100.0 40 .............................. TCTTTGAAATATTTTTTTGCTTTTGTTGGTATTAACATTT 1768615 30 100.0 42 .............................. CTGAAAACCCTATAAACACCGTTTTTACCTTCTACAATATAA 1768687 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 12 30 100.0 40 GCTTTAGAAGTGACTATGAGGGATGGAAAC # Left flank : AAAAAGTGGTTAGAGGAAAACCTATGAAACCAAAGTCGTTTTAAATAAATTGTGAGCTGTTGAAACCTAAGATTACTTATACCAATAGTAATATTTAGTTTTATTTTATGTAACACAAAACAGTCAATCTCAAGTGTAATATCTTGTATCAAAAATATTGATTGCAAATTCTATTTGATGCGACAAATTCGGAACTTGCTTAATTATAAAGAAATATAACAACAATATAAATGCATAATAAAATAAACACAAAAAACCACAAATCTGGCATATTATCGTCATAAACTATTAAATCCATTCCTGTAGGCTCTTGAAATCAAGGTTTTTCAAAACCACTATGTAACGCTTATGTAAACTCGCAAAATTCACCCAATTTTTGCCCCCTTATCCAAAATAAATTTTTTCCAAAAAGCTCATGTATAAATCACTTTTGATTTTTACAAATGTAACTGTCAAATTTAACAAAAATAATGGTATAATATCTATGAGGGTTTTACGGG # Right flank : CAAAAAAAGAAGACGCTTTAAGCGTCTTCTCAGACTGTTGACAAAGTATAACTTGTTCAAGTATAATCTCTTCAAAAGAGGATCCTTTCCAAACAGGATCCTCTTTTTTTTACACAAATAGTAGGAGGAATATACATGCTGACCATCAACAAAGATAAATCACGCAGAGAACAAATCGAATCCGTCTCCATCGAGCAACTCGTCCCTCATGACCACCTCGTCAGAAAAATCGAATCCGCCATCAATTTCGATTTCATCTACGACCTTGTCAAAGACAAGTACTGCCTCAATAATGGCAGACCTAGTATTGACCCCGTTGTGTTAATTAAAATTACCATTATCCAATATATGTTCGGCATAAAATCCATGCGTCAAACCATAAAGGAAATACAAACAAACGTCGCATACAGATGGTTTCTCGGATTCGGGTTTTCTGATACCATCCCTCATTTCAGCACGTTCAGTAAAAACTACGAACGTAGGTTCAAAGGAACCGATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAAGTGACTATGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 5 1791156-1792978 **** Predicted by CRISPRDetect 2.4 *** >NC_017095.1 Fervidobacterium pennivorans DSM 9078, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 1791156 30 100.0 43 .............................. GAAACGAATCTGTCAGGATCGTGCAACAGCTCCTTGGTCAAAA 1791229 30 100.0 40 .............................. TTTTTCTGTCTCCTCATACCCATCGTTTCTCAGCAGAAAC 1791299 30 100.0 40 .............................. AGTTAACCATTATATATGTACCTGGCAGTAACTTGTACAC 1791369 30 100.0 36 .............................. TGTCTCCAACTCGTTTTTCAGCCACTCACCAACTCT 1791435 30 100.0 45 .............................. CCGCGTGGGGTTCCACCTCCTTTTTTAGTTTTTGTTTTTGCCAGG 1791510 30 100.0 41 .............................. TACCTCGGCCCGTTTTTCGGGCCGGATACCTAATCTCAACT 1791581 30 100.0 45 .............................. TTTCTCATCCATTCAGACAATTTTATGAACCTAAAGAAACCCTTC 1791656 30 100.0 47 .............................. CAAGGCGGCATTCGTCTTTGGACCAATCGAAACCGAAGGAAATACCC 1791733 30 100.0 42 .............................. TATCCGTTGCATAATTAATAAATAACCTCTTTGCCATAGTTT 1791805 30 100.0 40 .............................. CCTCTTGATTTTCTAAATACTCCAACACACGCATATAGAA 1791875 30 100.0 42 .............................. TCAGACTACCCCAAAAATCGTACTTCACATGATACAATACAA 1791947 30 100.0 42 .............................. CAACACTGCCTCTTTTCTGAAGCCGCGGTATTCTCTCTCGAC 1792019 30 100.0 39 .............................. TCCAACTGATACAACCCCCTTCCGATTTGCTTACATAAA 1792088 30 100.0 43 .............................. TTCACGTCTACTGATGAGAAATTTTCAAGCCCAAGTTTAATTG 1792161 30 100.0 40 .............................. AAAGGAATGCCTTCCACGGTTCTATCAAATTTATGTCTAC 1792231 30 100.0 39 .............................. CTTAGTAGCGCTTTCATCATACTTTTTTCTTGCTAAACC 1792300 30 93.3 43 TC............................ TTTTTAACGAAAAATCTCACTTTCAACCAAACCATACTTTTAA 1792373 30 93.3 43 CC............................ CTTCTGGATAAGCTGGCATTCTTGAAGCTTTGATTATTCTGTC 1792446 30 96.7 43 .C............................ AAATATATAGCAATACTTACTTCGATTGGTCTAAAGTCATCAG 1792519 30 96.7 41 .C............................ GCAACGAACCATTTGGCTTTGATTTTACCATCAATGTCACG 1792590 30 93.3 44 .C.....................G...... AGATCGTTTTGCTGTAATGCTTCCAACGTAGTGTAAATTTTGGT 1792664 30 83.3 43 ............TG...A.TT......... TTTTGAAATCAAGCGTTTCAAGCCCATTTTGAATTTTTCTTAT 1792737 30 83.3 39 .......C.....G.....A..T.T..... AGCATGGGTTCCTGTGTTATAATAAAAGCGGAAAGCGAA 1792806 30 93.3 40 .................A........G... GAAGAGGCAAGAGAAGAAGATGATGAGTATAGAAAATGGT T [1792816] 1792877 30 96.7 41 .........................A.... AATCCAATATCACTTTGCCGGTTGTTTGTCTGTGATCATTT 1792948 30 80.0 0 .....G...AA....G....A........T | A [1792973] ========== ====== ====== ====== ============================== =============================================== ================== 26 30 96.5 42 GTTTTAGAAGTGACTATGAGGGATGGAAAC # Left flank : GTACTTTTTCCAACATTTACCATCGAAAATGTTTTCTCAGTTCATGCTGATGAAACTGTTCTTGTGTTCAAAGAACAAAAGTACTATGTTTGGCTATTAGTTGATCACGAAACTAACTTAATTCTTTGTTGGCATGTCTCAAAGTATCGTGATATGGGACAAGTCAAAGTATTGCTCGAGAAGTTCTTTGGTAATTCAAAACCTAGAAACATTGAACTTATTACTGATGGACTTGGTGCATATGAAAGTGCAGTAAAGCTGTTGTTCAGAAATATCAATCACGTAGTGGTACCGCTCGGTAAAAACAATCAATGTGAATCTAAGTTTTCATTGTTGAAAGACTTTTTCCGACTCAAGCGAGGGCTGAAGAATACGAAGAACTTAGCGAAATATATTCAAGGATTTTGTGTAGTGAAGAATCTTTGGAAAACGCACAATGGCAATATCAATCGCATTCTTTCACAATTACACTCTTTCATCACTACAAGTTAACACTATCC # Right flank : TCTGAAATGGTTAGGAGATTTTGTTTTAGAAGGGACTAAGAGAAAAGTAGCATGTGAGAATTGATAATACCAAAAAATAAATGCCCTGGTGTTTTTCACCAGGGCGATTTGGTTTATTTTGGTTACGGAATCATATTCCCGGCTGCGATGTAAAGGCTGTACCACTCTTCTCTTGTAAGATCAACATTTTGTGCTTGTGCAATCTTTTTTAATCTTTCTGGATTTGTTGTTCCAACGATTGGTTGAATCTTTGCTGGATGCCTCAAAATCCAAGCAATGGCGATTGCTTCTTTTGAAACGCTATATTTGTTTGCCAAATATTCTAATTTAGCGTTTAAATCAGGGAATAATGGGTTGTCTATAAATACCCCCTGTATGTTTCCGTATTCGTTGCCGTATTGGAATGGAGACCATGCTTGAATTGTTATTCCTTTCAGCCTGCAGTATTCAAGGATACTCCCGTCTCTATTAATTGCTTGATGGAATTTTGTGTTTGCAAA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTGACTATGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //