Array 1 769724-770273 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKHC01000001.1 Gardnerella vaginalis strain UMB0912 .16933_8_33.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 769724 36 100.0 28 .................................... AAAACGAAAATATTACTATTCGCATGAC 769788 36 100.0 29 .................................... GAATACTCGCAAAACCAATGAACAATGAG 769853 36 100.0 28 .................................... CGCGGTCTGATTGAGCGTATTTATTCCA 769917 36 100.0 28 .................................... TTATTGCGCGCACTAGGTTGATGCTTGC 769981 36 97.2 28 ................................T... TTAGGATACTGATCGCGATGCTGATTGT 770045 36 100.0 28 .................................... AGCAAACTATCACAGTAAAAGACATTGA 770109 36 100.0 29 .................................... GAAACTCATCACGCCACTAGCTCCAGTAG 770174 36 100.0 28 .................................... ACGATGAGGCTTCCCGTACCGTCACCGG 770238 36 94.4 0 ................................A..A | ========== ====== ====== ====== ==================================== ============================= ================== 9 36 99.1 28 CAAGTATATCAAGAGGGGTAAGAGCTAATTCTCAAC # Left flank : ATTTAACGGAGTTGGGCCAACTATACCTAGTGCTCTTAATGATATTGCACAGGCTTATGGAATGTATGTGGAAAAACAGTCAAAAGATTTCTTGGTTCCAGAATACAAGGGAGGATTATGAAAATTGATGAGGATAGTGGCGGAATGTGGTGTCTAGTAATGTTTGATTTACCTGTAGCTACAAAAATTCAAAGGAAAGCCGCTACTGATTTTAGAAATTTGTTGTTAGACATGGGATATGCAATGGTGCAGTTTTCTGTGTATGTTCGTTACACTCCAACTCAATCTGGTAATCGCTCAACCGTAAAAGCAATAAAAGAGAATTTACCACCATTTGGTCAAGTTAGAATACTGCATATTAGTGACCATCAATGGTCTTCTGCGCTGAGATATACTAATTTGCATCAGGATATTTCGTCTGAAACTCCTGAAATTGCCACACTTTTTTGAATGAAAAAATGCCTAAAAAGATTGAAATCTTGCCCCTCTTGAGCTTATAA # Right flank : AACGTACCCCCGGTGAGACTCAAACTTATTCATCTGATGAATGAACTTTACGAGGTACACCTAAATCGTCTGCTATATCGTCGTAGTCATCACCACATTCATAAGGGTCTAGCAAATTATAAGCTTCGATTAGCAACTCTTTAGGTGCGCTCTTGTGCAATCCATGCTTCTACTAAATAATAATCAATTGCAATAGACGGTTCGCCTGCTCGAATGGCACTATTGGCTGCTTCTTTAGAGAGCTTATCCATGTTAGGTTCTGCATATGGACGGAGTTTCTCAACCATGTCATAACAAATTTTCATCATGTCCATTAGCCTTTGACTACTCTAGTATTATCTATCTTATTGTATGCAGTAAGATGCATCGTCTATGTTTTCCTTCTTATATGTATGTATTTTAATTATTGATATTTAGATTATCTGATATACTTTTTATGGAATCTAGGGCTCCTCTTACCCTTAATCTCTTTCTAATAGAGTTGGTTTGGGGGAATGACT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTATATCAAGAGGGGTAAGAGCTAATTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 879266-880575 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKHC01000001.1 Gardnerella vaginalis strain UMB0912 .16933_8_33.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 879266 28 100.0 33 ............................ CATGAATTGAAACGTCTCCACCGTAGTAGACTG 879327 28 100.0 33 ............................ CGGGGTGTACGCAGTAAGTGAGTCTGATAGGAT 879388 28 100.0 33 ............................ CATTCTCACCAGCACGCATGTACGAGCCTTTAC 879449 28 100.0 33 ............................ CGTCCACAAGCTCACGCGCGTAAATATCAACCC 879510 28 100.0 33 ............................ CAGTAATTAATGCTTTTACAGACCCAAAAATTG 879571 28 100.0 33 ............................ TGCGAAGGATGCAAAGCGCACAAAGGACTATGC 879632 28 100.0 33 ............................ TGCGAAGGATGCAAAGCGCACAAAGGACTATGC 879693 28 100.0 33 ............................ CGCGCCTTGTTGAAAATCGCGCGCTCGCTTTTG 879754 28 100.0 33 ............................ CCGGCTTTTATTTAAGAGAGGTGCTATAGATAC 879815 28 100.0 33 ............................ CCGAGCGTCTTCAGATTGCTTTCGATTAAAGAC 879876 28 100.0 33 ............................ CTCTCTGCTGCACGCGTAAGCATCAAGCTCAGA 879937 28 100.0 33 ............................ CAAAGGGGACGGCACAAACACCGCCCCCTTTTC 879998 28 100.0 33 ............................ TTATAGGCGCGGCACTGTAAAGCCGTCAGATAT 880059 28 100.0 33 ............................ CGTATTGGCTTCGCAGCGCGTACAGTAGTGACT 880120 28 100.0 33 ............................ CGTCATCGGCTTTGCGTTCTTCTGTTTCTTTGT 880181 28 100.0 33 ............................ CTGCGGAATAACCGGCGTATTCCAAGTCCACGC 880242 28 100.0 33 ............................ TTCACCGTTAGATACGCTAGCACTCATATAGCA 880303 28 100.0 33 ............................ CCACACGCTTAGCGGTTTCGCCAGCATCCTTGA 880364 28 100.0 33 ............................ TAAGAGGTGAACTATGAGCCGTAGAATGCAACG 880425 28 100.0 33 ............................ TAAGAGGTGAACTATGAGCCGTAGAATGCAACG 880486 28 100.0 33 ............................ CATTTCTCAGGTAATGGGCTCACTTTTTGACCC G [880503] 880548 27 78.6 0 .........A...-........A..CAA | C [880569] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.0 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : ATAATTTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCAGATTAGATTTAGCATTAAAAGAATTTATTGATTTTGTCGAAAAATTACCTGTACTTGGATATAACGTACAATTTGATATGTCATTTTTAAATTCTGCTTTATCTTCATTAGATGAAAGATTTGATCATTCTCTTTCAATTAACAAAATTTTTGATATTTCTCGTTTTGTAAAGAAAGAAAAGAAATTTTTAAAAAACTACAAATTAAAAACAGTGCTGCACGAATACAACATTGCTGAATCTGTTCCACATAGAGCTCTTCTGGATGCTAGATTAACAGCGCATCTTGTTTTTAATTTGACAGAATTGTTAAAATTTCTTGCGTAATAGTAGAATTGAAAGTGATGCGCAATAATGATAGCTTTGAAAAGTAAATAATTTTTGCTGTTTAATCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : ACCTGCTTGAGCACAGCGCAACAAAATCAACTCCAAACGCGAGAAAGTCATCCCACGCTTGGAGCACAAATGTAAATAAAAATATAAAAATAGCGTTTTGAGCCAGCACTCGATATATATTAAGTGAGAATATATTCGCATCTATCAAAAGGCTGACTTTTCCATAAATCGCACGGAAACACACCACCAAACGACACGCCAAAATAGGCGAGGGCTTGCATTTGAGAATATTTCGGGTATAGTAGTTACTCGTGCTTCGGCGCTGACATTGTTCAGTAAAGTTGCATTGCGGACATAGCTTAGTTGGTAAAGCGCAACCTTGCCAAGGTTGAGACCGCGGGTTCGAGTCCCGTTGTCCGCTCTAGGTCCGATGAGTTATTCGACCTTACGGTGGGTTAGCCAAGCGGTTAGGCAGCGGCCTGCAAAGCCGTATAGATGAGTTCGACTCTCGTACCCACCTCGATTAAGCGGGTTAGCTTAATACACAACCGGGCGGTTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //