Array 1 2252450-2253591 **** Predicted by CRISPRDetect 2.4 *** >NC_022571.1 Clostridium saccharobutylicum DSM 13864, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2252450 30 100.0 36 .............................. AATAGAACTTGCTAAAAGGTTAGGAGTTGCTAAAAG 2252516 30 100.0 36 .............................. AATTAAGTGATGAAAGAATAGAAGAAAAAGAAGTTG 2252582 30 100.0 35 .............................. GAAGGTAATGAAAGCATTTCACTCAACTGACTAAA 2252647 30 100.0 35 .............................. GCTAGTAATGAAGATGATGATGTAGACACTACTAA 2252712 30 100.0 36 .............................. ATAGGTGATAAGGATTATTCTATTTCTAGCAGTTGG 2252778 30 100.0 34 .............................. TGTTTTCCATCCATTTCGTACTCATTCGAATTTA 2252842 30 100.0 34 .............................. AAACTTTTTCTTTTTTATTTTTAGATTTAACGCT G [2252871] 2252907 30 100.0 36 .............................. AGAAATTTTATACACATAAGTTCATTCACTTCAAAT 2252973 30 100.0 35 .............................. GATTTAATGGAAATTTAGATGAACTTTCTGTATTA 2253038 30 100.0 36 .............................. ACTAGTGAAACTGCCATCAATACTTACATTGAATTC 2253104 30 100.0 36 .............................. TTAAATAATTATTAGAATTAGATATACTACTAGTTG 2253170 30 100.0 35 .............................. GCAAATGGAACAGATGTACTTGATGAAGAATATGA 2253235 30 100.0 35 .............................. GCACATTTATTCAAAACCATTTGTATAGCATTTTT 2253300 30 96.7 35 ..C........................... TGACCTACTACGTTTTCATGACTCCCCACCATGAT 2253365 30 96.7 35 ........C..................... AGTGCTGTAGACATTTCCCCAATTACTAAAAGAAT 2253430 30 100.0 36 .............................. TTGTCTAATTTTTTTATTCCTGGTATTTCAGTTATT 2253496 30 100.0 36 .............................. AAATTATAAGCATATACAAGTGTATTTGTTTTTCCT 2253562 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 18 30 99.6 35 GTTGAAGATTAACATTATATGTTTTGAAAT # Left flank : AGGGTGTTGAAACACAAGATGTTTCCTATATATCTACTTTGGATAGCTTGTTCTTAAAAGATTGTGTTAATATAAAAAAATTAATCAAACCTAATGGATTTAGACCTGTTAAAGCAGCACCAAGCTGTGGTTTAGAAAAAATGCGAGAATATGTATACCAAGAGTTTTTACCATATGCTTTGGAACCTAAGTTTAATACATATGATACTAGAAAATTTATTTGTACTAATAAGTCTATAGAGGTTAATGATAAAGAATCTATTATCTATAGTATTAATGATAAAAATCTATTTTTCTATTAAAAAGTAACAAGTATACAAATAATTTACCAGGCGATTTTAATAAGTAATTTGTAGCGAAATATCTATTTTATGAGCTTTTACTATTTTAAGTATTATTGTATTTAATTTTATAAAATAGCTGGTAAAATAATATGCAAATGTAGGTGAATGGCTGGATTAAAAGATATTAATATATATAGAAATGACTTATTTACTTTG # Right flank : TATAGATACAGTCCAACTAATTTAATAAAAATAAAAAAGGAAGAAGAGAATTTATGTATTTTGAAAATATAAAAATTATAGATATATCTACGTTATTAAAAGAGCCATCTGATATATATTCTCATACTAAGAGTGACATTTTAGAATATGAAACTCTAGCTGAGCATAATGAGCGGTGCATAAAATATTTTTATAAGATAGTAGATGTAAAAAATCTAGATAGTGTATTTAATAATTTTGAACAAAGACTATTAAAAGGCTGCTCAAGTAAATGCATTAATTTGTGGAAGGAAATTGTATTAAATACTGTATTTTTCCACGATGTAGGTAAGAGTAATCCTGGTTTTCAAAAAGAAAAAATGAAAAATGAAAAGTATAAAAATATAAAAGTAAATAATTCTAATCATTCCCGTGCATCAGGTATAGTTTTCTTTAATCATTATTATAATGAAGTATTTGCTGTTAATAATGATGAAGCTAAGGTGTTATTTGTTTTCCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGATTAACATTATATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 2820275-2818156 **** Predicted by CRISPRDetect 2.4 *** >NC_022571.1 Clostridium saccharobutylicum DSM 13864, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2820274 30 100.0 36 .............................. CTCAACTGACTAAATGTAAAATCAGAATACCTTGAA 2820208 30 100.0 34 .............................. TGATGAAATATGCACTAAGAGGATTTGATTGATA 2820144 30 100.0 36 .............................. ATAACAACTAAAGTCTGATGTTCTTTACCCAAGTCA 2820078 30 100.0 36 .............................. TTGATGGAACAATGGGCAATTGATTTAGGATTAACC 2820012 30 100.0 35 .............................. AGTATAAATACGTTTCATTCTAATAATAGTTACGT 2819947 30 100.0 37 .............................. GATATTTTAATATTTGCGATTCTTATTTTCTTTATGA 2819880 30 100.0 35 .............................. ACGAACTGAATTACCTGACCTTACAAAAGTGAGTC 2819815 30 100.0 34 .............................. ATTCTATTCTCTTGAGTTTTATCTATTTCTAAAT 2819751 30 100.0 36 .............................. ACAGAAAAAGAAAATCCACTAACAGAGCAACCATAA 2819685 30 100.0 35 .............................. TATGTTTTATCATATGTTCAACCTCACTTTTACTA 2819620 30 100.0 35 .............................. CTACCACTTTTTGTATAACATATAGTAACATGAGT 2819555 30 100.0 36 .............................. AACATAATAATAATTTCCTCCTTAAATTAAATTTGC 2819489 30 100.0 35 .............................. GCTAATTTTAAATAAATATCAACATTTCCGGAATA 2819424 30 100.0 34 .............................. TTAGGAATTACCATGTAGAATTTACCACCATTAT 2819360 30 100.0 36 .............................. GTTTTAGTATCAGTTTTAGTGTTTGTATCAGTAAAA 2819294 30 100.0 36 .............................. AAAGCTTCTTAAAATCTACTTAAATATGCCTACCTT 2819228 30 100.0 35 .............................. ATATAAAAGGTCAAGATGGAAAAATTAACTGTTGG 2819163 30 100.0 35 .............................. TTCTGATAATGTTAAGTTTAAGTCTGTTGCACAAG 2819098 30 100.0 34 .............................. GAAGGAGCAGGGTCACTTGGATTATCAGTTTTCG 2819034 30 100.0 36 .............................. TACATTGATTTAAAAGATGATGAAATTAATATAGTT 2818968 30 100.0 35 .............................. CTCATCATTTATCACCTCTCTATTTTAAATACTTT 2818903 30 100.0 35 .............................. TTTGCATCGAATCCAAGTTGAGTAAATCCATCTAT 2818838 30 100.0 36 .............................. TGTAGATAATAGTTTAGTACGAGCAAAAAGAATAAA 2818772 30 100.0 35 .............................. TTCCATCTATTTGTAATACACTAGCATTAGCTGGA 2818707 30 100.0 36 .............................. ATCTACAATAGATAACTTAAGCCCAAGTAACTATGT 2818641 30 100.0 34 .............................. TTGTATAAAAAAAAGAAGACTAAAACAAATCAAA 2818577 30 100.0 37 .............................. AACCATAAGATACCTATGTATCCAAAAGGCGGTTTAA 2818510 30 100.0 35 .............................. GCAGTAATTACACTCTTTGGTAATAACTTTAACCT 2818445 30 100.0 36 .............................. TTATTTGAAATATCTATACCTTTCATTATTCATCTT 2818379 30 100.0 34 .............................. TATTTAATAAGCTTATCTATAACTGGCTCAAAGT 2818315 30 100.0 36 .............................. AAATTAGCCAATATAGCAAACAGAAAAGGAAGAAAT 2818249 30 100.0 34 .............................. AGTAAGCCATGGGGTAGCTACAGAGTAAGTGTAG 2818185 30 96.7 0 .................C............ | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 99.9 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AATTCATTCCTTTTAGTTTAAAGGAGGGAATGTAGTGAGTAAAGTTAGTAATTATAATTATGCTTTTGTATTTTATGATGTCAATGAAAAACGAGTACAAAGGGTTTTTAAAGTTTGCAAAAAATACTTATCTCATTTTCAAAAATCAGTATTTAGAGGAGAAATGTCTCCTTCAAAGCTAATAAAGTTTAAAACAGATTTAAATAAAGTTATTGACAAAAATGAAGATTTCATTTGCATAATTAAGTTAATGAACGACAATGTATTTGGAGAAGAAGTATTAGGTGTAACATCGGGAGCAAATGGTGAGGATTTAATAATATAATTTACCAGGCAAAAACAAATTTATATCTACGAAAAACAAGGTGTAATGCGGATTAACATAAATATATTTAAAAAATTAATTTAAGTTGAGGGTGCTTGGTAAATTTTTAAGGATGTGTTACACTAACTATAATGAAAGCATTATCTTAATATAAGAAGTGGCTTTTTTCTTAGGG # Right flank : TTATCTAAAACATACTTGTGCTTTGTATAATTTAAAGACTAACATTAACTATGATGAAACCAATTGTAAAAGACATATTGTTTTTAGCATAAAAATCAGAAGAGGCAACTGAAAATGTATGGTAGTAATTATGGATTTAATAGATACATTAAGAGTAAGCTTAGAGAATTTAGGATTTAAATTTACGTAAAATTATGAATTAAAAAATAAATAGCAAATTATAAAATCGCATTATTCAAGAATGAAACAGCAACCTTTTTAATTTATTGCGTCAGTTGCCTTGTATTAAGAAAGGATGCATTTGCAATTTGGTAATATTACGTTATTCGTTACATGGAAAGTTTACAATTATTTACACAACATGTAGACTTGGCGCGGTAAACAAACATTGTTCTTTGATAAATAAGCACTATAATATTTACAAAATATGCTATAATTGATTGAAAGATAGTAATTTGTATGAGCGATTATATGAGGAGATGTATTATGATTAAAAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 2897980-2898110 **** Predicted by CRISPRDetect 2.4 *** >NC_022571.1 Clostridium saccharobutylicum DSM 13864, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =============================== ================== 2897980 23 95.7 31 .................G..... ACTACCAGTACCTGTACCGAAGCCTCCGGCG 2898034 23 100.0 31 ....................... GCCACCAGTGCCTGTACCAAAACCACCTGCA 2898088 23 95.7 0 ................G...... | ========== ====== ====== ====== ======================= =============================== ================== 3 23 97.1 32 CCCATTCCGCTTCCTGAACCAAA # Left flank : CTAATTCTACCTCTGCACCTAATTCTTCCGTTCCCATTAAAGCTTCCTTAACAAGAATTTCTGAATTACTCATTTTTCTTCCACATGTTAATCCTAATATTTTCATATAATTTCTCCTTACATATAATATATTTATGAATATTGTTTTTACTCACTTTTTGAATTATATCAATTTATTTGTATTCTAATAAGTTATTTTTACCTTTAGATCAAAAAAACTAATTTTCTTAACATATGTACTCGTTATCAATTAAGTTATATACTTAATGAAATAAACTACCATATATAACTTATATAAAAAATTAACGACGATTTTACTTGTTGCATTTCACTTTAAAAACATTTTTATAATATTATTGTTTAATTTTCTGTATATAAAAAAGGATATGAATATAAATTCACATCCTATAATAAGCTTAATTTACTCGTAGTACAATCTATTTCTTTTATTTACAGTACTACTCCCATTTCTTGTATTTGTGCCTGTGCTTCCTCCTGTA # Right flank : AGCCACCAGTACCTGTAGAACCTCCAGTAGTTGTTCCTGTGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCAGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCAGTAGTTGTTCCCATGCCACCTTTTAGCAATTGAGATGCACCACTATTTTGCCAATTTTGAACTTGGTTAATTGCTTCTTGAGGAGTTTTTCCTAATCCAACAAGCACTCCCATCAAAGTAATCCTCTGATATAAACGTTGCATGTCAGTTCCCTGTGTACCCATGGTACTTCCCTGTGTACCCATGGTACTTTGATTACTTTCTCTTAAAGCATAACTGACTAATGGAGTAATATACCTAATCCAATCATCTGGAGTAAATTTTGATGTATCTTGCTTTGCTTGCCTGTTCATGGACATGAAGAAA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCATTCCGCTTCCTGAACCAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //