Array 1 13551-8805 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXFX01000014.1 Flavobacterium psychrophilum isolate 1-H7.00_S16_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 13550 46 100.0 30 .............................................. ATATTTCATTACTGCAAGAATGGTTTCCTA 13474 46 100.0 29 .............................................. CAAAAAACATCATGACAACAAAAGCAAAC 13399 46 100.0 30 .............................................. TTAGGTTTAACCATTAACAGGACTTGCCAA 13323 46 100.0 31 .............................................. GAGGCTAATGCGTGGCATGGTGCTACAGTAG 13246 46 100.0 30 .............................................. CGTATTACTATCCTGTATTTGATGCCGTTA 13170 46 100.0 30 .............................................. TTTTTCTTGTCGGGCTTGTTGAAAAAAGCC 13094 46 100.0 30 .............................................. AAAAGAACGGTTAAAAGACTTTTAATAATG 13018 46 100.0 30 .............................................. AATTAAGGGGCTAATTACTTAATTAAATGT 12942 46 100.0 30 .............................................. GCTGCGTCTCTTTCATTATCGTGATAGCTA 12866 46 100.0 29 .............................................. TAAAACAATTGTTTCGGTTTACTATATGT 12791 46 100.0 30 .............................................. CTGAAATTTTAAAACCTATTGCGTTTAACT 12715 46 100.0 30 .............................................. TACACTAGAAGAAACTTGTAACGAGTACCT 12639 46 100.0 30 .............................................. CATAAACACGGCGTTAGAAGCTTCATTTAA 12563 46 100.0 29 .............................................. ACAGGTTTATTCCTTGTAAATGCTTCTTA 12488 46 100.0 30 .............................................. TAAACCAACAACTAAAAGGCGTTTACCCAG 12412 46 100.0 30 .............................................. ATTTGCCCCCTGTTAAGCTAATAGAGATGT 12336 46 100.0 30 .............................................. ACATAGCAGGGAAGAAACGAAACGAGAGGT 12260 46 100.0 30 .............................................. TCTATCTCTTTGTACGACAACCCAGTTTTG 12184 46 100.0 30 .............................................. GATAAGGTTCGGTTTGATGCGAAATGCAGG 12108 46 100.0 30 .............................................. AGTTATTTTATATCGCAATCCATTGTGTTA 12032 46 100.0 30 .............................................. GAATTAGCGTTTACCATACACTTCATCTGC 11956 46 100.0 30 .............................................. AAAAAACATGGATATAAACGGCTATTGGTA 11880 46 100.0 30 .............................................. ACTATGTTTAAACTTCTCATATACTCGTTA 11804 46 100.0 30 .............................................. TGATATTTGCGCCTAAAGAACACTACCGAA 11728 46 100.0 30 .............................................. GCCCATCTATTAAGAAGTACACGACACCCT 11652 46 100.0 30 .............................................. CACGAATGGCAACGGATTAGAGGGGGCGTA 11576 46 100.0 30 .............................................. AAACTAATCGAAACACTATAATGAACATTA 11500 46 100.0 30 .............................................. TCTAGACCGTTGCGTTCGTCTTCATCTACT 11424 46 100.0 29 .............................................. TTATTATAGTAACACTCCCTAATTTTCTA 11349 46 100.0 30 .............................................. TCGTCGGTTCTATCGTCTTGTTCTTCGGGG 11273 46 100.0 30 .............................................. TTCCGATTTCTTGCCCCGCTTGAATCTTAA 11197 46 100.0 30 .............................................. TTAAATCTGATAAAGCAATTTTAGAAACGT 11121 46 100.0 30 .............................................. GGGGTATCGCAAGATATACATCGATGAGAT 11045 46 100.0 29 .............................................. GTCATAGTCTTCGAAACAACCCATGTCCC 10970 46 100.0 30 .............................................. AAAGAAGGAGATCCAGCTGAGTTTAAAGTT 10894 46 100.0 30 .............................................. TTACCACGGCTAAAGCAGTAGATTCGGTAG 10818 46 100.0 30 .............................................. TAAAGCATTGTCATTAGCGTACTCACTTTC 10742 46 100.0 30 .............................................. TAAATCTATTCTTGAGGTTCGAGTTTCTAG 10666 46 100.0 30 .............................................. TAGATACCGTGTTAAATATCTTAACGTACT 10590 46 100.0 30 .............................................. CAAGATGACTATCTCGCACTCGATAGATGA 10514 46 100.0 29 .............................................. TGTAGTCTTCGAATAGCTCCATAGCCCAG 10439 46 100.0 30 .............................................. TTATTCACTGTAAAAAAGGGCGTTGTATTT 10363 46 100.0 30 .............................................. CTATGCCTTTTGAGGTTCGAGTTTCGGTAG 10287 46 100.0 29 .............................................. TAGATGATGATAGCGAGCTATGTCCTTGG 10212 46 100.0 29 .............................................. AATCTTAATTCTTAAAAAAATGAAAAAAT 10137 46 100.0 30 .............................................. TTGCGGTTGTGGAAACGGAACAACTGCTAA 10061 46 100.0 29 .............................................. CCTACTTGCAAAAAAAAGGTTTAAATCTT 9986 46 100.0 30 .............................................. GCTACGATTTCATCGGCACCAATAGCACAC 9910 46 100.0 30 .............................................. AGCTCATGTCCCGTGCAATTGTTCATTTTT 9834 46 100.0 30 .............................................. TCGTTGTAGTCTTTGAATAGCTCCATATCC 9758 46 100.0 31 .............................................. CAATCCACAATGGGCGTACAACCCTACTACA 9681 46 100.0 29 .............................................. GAATTATCGTAGGTATAAAGATGCGTACG 9606 46 100.0 30 .............................................. AAGCACACAACCATTTAAGTAGTGACATTA 9530 46 100.0 30 .............................................. TTACGGATTGTTTCTTCGTCGAAAAACACA 9454 46 100.0 30 .............................................. TAATGGACTTGTTAAGTGATTCGAGCCAAT 9378 46 100.0 29 .............................................. TATATTGACAAATATATTCATTCAAATAT 9303 46 100.0 29 .............................................. TGAATTAGCCTATGTAGGTGACGGGGGTG 9228 46 100.0 29 .............................................. ACTTGGATAGATTATGATGGTACGCCTAA 9153 46 100.0 30 .............................................. TAGAAAATTTATCAGATGGAAGTCCGATTA 9077 46 100.0 29 .............................................. ATTGATGATAGTACAAGTGACATTGGAAT 9002 46 100.0 30 .............................................. GCTACTACTGAACCAGTTTTATATCCAACA 8926 46 100.0 30 .............................................. TTGGTCGGGGTCTAATATGTTTGGTTCTAC 8850 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 63 46 100.0 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TTTGTCTATCATAACTATGTAAATATATAAAATGTTAAAAAGTTATTTCCGAAAATTTTTGAGCTTTTTGAATTAGCTCAAATTTTCAGAATAACTTTTTAACTTACACACTTTGTGTTATACTGCCTATTTTAGCTTATAATTACCAACCTTATACTCATACATATCCCGACGGACGA # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATCACACCAATTTTGCCATGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 181-2200 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXFX01000021.1 Flavobacterium psychrophilum isolate 1-H7.00_S16_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 181 46 100.0 30 .............................................. GCACAGGAACTATACAAGAGTTGTTCGACG 257 46 100.0 30 .............................................. TCGAAGCAGGGGCGCAAGTTAACGTTATCT 333 46 100.0 29 .............................................. ACCACTCGCTATCACGGAAAATGTACCAG 408 46 100.0 30 .............................................. AACTATAATCAGCAAGGTAGTTAGTAAATA 484 46 100.0 30 .............................................. TTTGTGAAAACGCCTGTTGCGTAGTTATAC 560 46 100.0 29 .............................................. TTAGCCATCGCTATCACTTGGAAAATGCC 635 46 100.0 30 .............................................. TATTCTAAAAAAGGCAACGGTTCGCCCCGA 711 46 100.0 30 .............................................. AGAAAGAAACAAAGAGACCTTGACGAGATA 787 46 100.0 30 .............................................. ATACCTGCCACTAGATAGAACTCTTTGACT 863 46 100.0 30 .............................................. CTTTTTTTTTCAACCAGGCAAGCTAGAATT 939 46 100.0 30 .............................................. ATACCTAACCAGCGCAACAATATTCATACA 1015 46 100.0 30 .............................................. ACTTTCGGTTTGCATTCAACAAGTTATTAA 1091 46 100.0 30 .............................................. AGAGCGAAAAAAACGCTAAGCAATGAGGTT 1167 46 100.0 30 .............................................. GTTTTCAACAAGTTTTGCATTGTCGTTATA 1243 46 100.0 30 .............................................. ACTATTGCGCATATAAAACAACTTAGCTCA 1319 46 100.0 30 .............................................. CTGGTATGGCATTATTTGGCGACCAATCAA 1395 46 100.0 29 .............................................. TATCGAGAATAATCCGAGTATAATCATCC 1470 46 100.0 30 .............................................. GGCAAGGGTTTCTGAAAGCCAACGGCGATA 1546 46 100.0 30 .............................................. GTCAAGGTCTTTGGCGTGGCGTAATCCGTG 1622 46 100.0 30 .............................................. GATTCTCCAGAAGGTGCAGATACTCCAGCT 1698 46 100.0 30 .............................................. ACTTCATTATCATTTAACTTTAGGCTATCT 1774 46 100.0 30 .............................................. TGACACCAGAACAACTACAATTACTGCTAG 1850 46 100.0 30 .............................................. CTAAGGAGTTCAAAGCGGTAACCGAACGTT 1926 46 100.0 30 .............................................. CCTGATTATTGTTTCTAAAAGCAATATTAG 2002 46 100.0 30 .............................................. GTTCCACGTCAAAACTGTTTAGATTAAATT 2078 46 100.0 30 .............................................. TGAAAAAGACAGGCATGACTTCGGGAATTG 2154 46 82.6 0 ...............................GAC.CT..CC....A | G [2196] ========== ====== ====== ====== ============================================== ============================== ================== 27 46 99.4 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TTTGTCTATCATAACTATGTAAATATATAAAATGTTAAAAAGTTATTTCCGAAAATTTTTGAGCTTTTTGAATTAGCTCAAATTTTCAGAATAACTTTTTAACTTACACACTTTGTGTTATACTGCCTATTTTAGCTTATAATTACCAACAACATTAAAAAACGAGTAAAATGATAGAAGG # Right flank : GTGTGTAAGTTAAAAAGTTAGGCTTGGATTTTATAATCTGAGCCTTTTGTCAAATATAAGATTAAATTGATTTAAAACAATACCCCAATTTTGTATTGGCATTGACCATTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 29043-29393 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXFX01000070.1 Flavobacterium psychrophilum isolate 1-H7.00_S16_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 29043 46 93.5 30 T.G..T........................................ TTGAAGCCACATTTAGCACTCATCAGAATG 29119 46 100.0 30 .............................................. AAGTTATGAAAACTAAAATTAATATCAGCA 29195 46 100.0 30 .............................................. AATAGACCCTAGTACAATAGACCATACAGT 29271 46 100.0 30 .............................................. CGTTGAGAGATGACGACGTTATTGACGTTG 29347 46 82.6 0 ...............................GAC.CT..CC....A | G [29389] ========== ====== ====== ====== ============================================== ============================== ================== 5 46 95.2 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TAAAAATGGCATGTTTTGGTGGTTCTTCTAATGTTTTCAAAAAAGCATTAAATGCTGCAGATGATAACATGTGAACCTCATCGATAATATAAACTTTATATTGTCCCGTTTGTGGGGGGATACGAACTTGATCGATTAGATTACGAATATCATCGACCGAATTGTTTGAAGCCGCATCGAGTTCGAAAACATTGAAAGCAAAATCTTCGTTCGGGTCGTCGTAACCTGGTTGGTTTATTTTTCTGGCTAAAATTCTGGCACAAGTTGTTTTTCCTACGCCACGAGGACCAGTAAATAATAGGGCTGATGCCAAATGATTTGTTTCTATCGCATTTAGTAACGTATTGGTAATGGCTTGTTGCCCCACCACGTCTTTAAACGTTTGCGGACGATATTTACGAGCCGATACTACAAATTGTTCCATAAAAAAATATTCGAAAGCAAATATAATGGTAATAAGTGAAAATGCAAAAGTGAAAAGTGAAAAGTTTTAAAATGTT # Right flank : GTGTGTAAGTTAAAAAGTTAGGCTTGGATTTTATAATCTGAGCCTTTTGTCAAATATAAGATTAAATTGATTGGTGGATTCAATTAATAAATGCGAATTCTTGATTATTGTTTAATATTTGTAAATATACTTCATTTGGCGAATTAAATTGATGTCTTTTTCGAGGCCTGTTATTCAACTTTTCAACAACAATAGTCA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.56%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //