Array 1 52378-51270 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAUR01000006.1 Yersinia pseudotuberculosis NBRC 105692, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52377 28 100.0 32 ............................ TAACTTGAACTCTTCGAAATACATTCGACCTT 52317 28 100.0 32 ............................ ACCTGCAAATTCTTTAGCTTCAATAACATCTA 52257 28 100.0 32 ............................ AATATATTTACGGTGGAGGTGTTGCTGAAAAT 52197 28 100.0 32 ............................ TACCAAAGCCGGAGAATGTGGCTGTGCCACAA 52137 28 100.0 32 ............................ TCATATCCCTCAGAATCAAAAGGTAGAAATGA 52077 28 100.0 32 ............................ GCTGGAACCCACTGACTTACATTGATCGTAAC 52017 28 100.0 32 ............................ ACTCAGCCACACCAACATACTTAAGCCCAAAA 51957 28 100.0 32 ............................ ATGCCGCAACGCCACACTCAAGCTGCTCGCGC 51897 28 100.0 32 ............................ TTGAGCGGCTCAACGCCAGCATCAAGCAAGTT 51837 28 100.0 32 ............................ ATATAGAGAGTTTAAAAACAGTTTACCTAACG 51777 28 100.0 32 ............................ CAGGCGGGGCGGCCCGATACTGACCCGAGAAT 51717 28 100.0 32 ............................ ACCCCCCCATTTCTTGAAGTGCTGATAGTGGC 51657 28 100.0 32 ............................ TTCCATTCAACCGTAACGCCCTTTATATTAAC 51597 28 100.0 32 ............................ AACATCACATGCCGCAAAATATTCATGCGCTG 51537 28 100.0 32 ............................ TTGCGGTAATCGCTCCACGATGGGATTTTGAA 51477 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 51417 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 51357 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 51297 27 85.7 0 ...................A-.A.T... | C [51273] ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAGGCAGCTTAGAAACGTTAGTTACCGCACGACCGGCGGTCGCAGT # Right flank : TTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 89103-88355 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAUR01000059.1 Yersinia pseudotuberculosis NBRC 105692, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 89102 28 100.0 32 ............................ AGAATGATGAGCAGTAACGCCGGTAGATAGGT 89042 28 100.0 32 ............................ AAGTTCGGGAAGAATGGTGACTTCTTCCAACT 88982 28 100.0 32 ............................ CATCGTCAACGCGATCGACGGTCGCACGAAAA 88922 28 100.0 32 ............................ AGATAGAGCTAGTGGAACAAGGAGGGTGGTTA 88862 28 100.0 32 ............................ TAAAAACACCGTTGTAAATAATACTTTTAGTG 88802 28 100.0 32 ............................ ACCCCAAGTACCACCAATAGACTCCCAATATT 88742 28 100.0 32 ............................ TGTCTCAAGAGACGAGGAAGTAAATATGCGTA 88682 28 100.0 32 ............................ GTTAAAGATGCGCTAACGGCTATGATTCAAGT 88622 28 100.0 32 ............................ TGAGCGCGCCCCACTGCGCGGCGTTGAGCGTA 88562 28 100.0 32 ............................ ATAGCGTAATACCATCGTCGGGTTAATATGCT 88502 28 100.0 32 ............................ TTGCTCCATCAATTTGCGAGCCACCTGTGATC 88442 28 100.0 32 ............................ GTCAACGCTTCACTCCTTGCGCGGGGTATAAC 88382 27 89.3 0 .....................CC.-... | T [88357] ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32202-32469 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAUR01000058.1 Yersinia pseudotuberculosis NBRC 105692, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32202 28 100.0 32 ............................ AGCGACAACGAAGGGCATGATGATGGCTTTGA 32262 28 100.0 32 ............................ AGCTCAGCAATGCTGAAAGGCCCGATTGATAT 32322 28 100.0 32 ............................ ATAATCGTATCATCATTTTCAATTAATTTGTC 32382 28 100.0 32 ............................ CTTGGAATACAGATTATTGCTGGTACTGTCAA 32442 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : AAAAAATCTGGGATATTAAACGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 54198-54049 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAUR01000043.1 Yersinia pseudotuberculosis NBRC 105692, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54197 28 100.0 33 ............................ ACTTTCGGAGACAGTGATTCTACGACCGATGCA 54136 28 100.0 32 ............................ AAGCCAACGACGGATCTCTTCAACGGCAATGC 54076 28 89.3 0 ...........T............T.G. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATCCTTTAAACACCAGACAGCACAACAACCCAAGAGGTTAGTTACTGTCCGCGGACGGATAAGTCACAGTTTCCCCATTCAGGTTATATTTTATCAGGGATAATAGGTGAAATAGGGGGGAGGGGCTAATGGTAAAAAGCCTCTTATTGATCCAATATATAATAATTCAGATAAAACGCGCATCTATTAGGATATTTCAGACATTGGCGTGGGAATTTTCTGATATTTATCATAGGAATCCCATTAGAGTACGCCAATATTCTTTTTTTAATGTACCTAATAACCTCATTTAGTGAATAACCCAATTGACCTGAACCCTAAAAACGAAGCTATGGCAGAGTCATGCCCTGAGAGCGTTTCAGGGCGTTAGTACAGCAGATGATAAAGATCACAATAATAACTCATGGGGATTCTTAGCCTATTCACATCAGGGGCGTCATTTTTTACCCTTTGGCGAAAGAGTTATTTTATAAACAGTTTGTTACCCGTATTATCTTACT # Right flank : GGGTTACTGTCTGTGCGCCAGCGCGGCCCCAGCCTGATCCTCCTGCTGGTAGGCCAACGCCACGACCAGCGACTGCACTAGACAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCGGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTAAGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCTGTTCACCTGCTCGCGCAACATCCCCCCGAGGCCATGAAGTTGCACTGGGCGACATTCTAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGCAGTTCCACCGCGCGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGCTGTAGTGCCT # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //