Array 1 127818-126751 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCZL01000002.1 Escherichia coli strain VREC0524, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127817 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 127755 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 127694 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 127633 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 127572 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 127511 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 127450 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 127389 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 127328 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 127267 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 127206 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 127145 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 127084 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 127023 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 126962 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 126901 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 126840 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 126779 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154767-153518 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCZL01000002.1 Escherichia coli strain VREC0524, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154766 29 100.0 32 ............................. CAAACCGGCTTTGACATTTGCGGACGCGGTGT 154705 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 154644 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 154583 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 154522 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 154461 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 154400 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 154339 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 154278 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 154217 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 154156 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 154095 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 154034 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 153973 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 153912 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 153851 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 153790 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 153729 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 153668 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 153607 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 153546 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //