Array 1 24048-23531 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEWO01000016.1 Gluconobacter japonicus strain NBRC 3271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24047 29 100.0 32 ............................. AAATAAGGATGCGTCCTTCATCTCGGATTGAT 23986 29 100.0 32 ............................. GCAGCTTTCTTCTTCGCGTCCGTTGGCGCATC 23925 29 100.0 32 ............................. ACGAACGAAAGCATTTTCTCGATTGAGGTCAT 23864 29 100.0 32 ............................. TTCTGCCATTACAGAGCGGCGAAACATTACTC 23803 29 100.0 32 ............................. TTTGGGGGCGTATCGTCGGAGTAAACCGCATT 23742 29 100.0 32 ............................. TACCATCTGTCTGAGAATACAGCGGGCGGTGG 23681 29 100.0 32 ............................. ATACCTAACGAGCAGGCCAGATCGGCACTATG 23620 29 89.7 32 ...........A.GT.............. CTGGTGATCCCTAGGACATAGCAGACGGCCGA 23559 29 69.0 0 A..........A.GC........ATT.TC | ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.4 32 GTGTTCCCCGCGTAAGCGGGGATGAACCG # Left flank : CGGGAACTGCGCGTTCCATTCCGGACGGCCCATCACGTCACGGGGCGTCTTGTAGGTCTGGCGGAACAGCGTGGTTGTGATCTGGCGGACCTGTCTCTTGAAGACATGCAGGCCGTGGAACCGGGCATCAACGCCGGCATTTTCGATGTTCTAACGGTTGAATCTTCCTTGGCGTCCCGCACCAGTCTGGGCGGAACCGCTCCATCCAACGTGCGTCAGCAGGCTCAGGTCTGGCTGGAAAAACTTGGAGACGCTGCATGAGACGTTTTCTGCTTGTTGGCCTGACCCTCGTAGCACTTGGCACCGGCCTGAGCGCGTGCGGAAAGAAAGGGGCTCCTCACGCCCCCGGTCCGGCTTCAGACATCACCTATCCGCGCAGTTATCCGCCTGAATAATTGACGTTTGCAGGGATCTGTGAACGCGTGAAAAACAGCCTGTAAAAATCGGTAGATTTTCAGGAATGGAAATTCTCTTTCTGTATCAATATGTTGTCAGGAAGA # Right flank : AACTTTGAAACGCTACGCCGCTTTTTCAATCTCAGACATAACAGGGGTATGGCCGCTCCCGGCGAGCGGCTACGATCAGCTATCCCCCAGCGCTTTAACCACCAGTGGGTGCTGCAGCACATTCTCTGCAGACCAACCCAGCGAGCGGAGGACACGCACCCCCTCTGCGCCGTCACGTTTGGAGAGCTTTTTTCCCTCATCATCCAGAATGAGGGCATGATGCCTGTAAGCAGGTTCAGGCCATTTCATCAGAGCCTGAATCACACGATGAACGGATGTGGCAGCGTAAAGGTCCTGTCCTCTTGTGACGCAGGTTACGCCTTGTAGGGCGTCATCATGGGTCACGCACAGATGGTAAGACACACCTGTGTCTCTGCGCCCCAGAACGATATCGCCAAATTCTTCAGCGCGCCCCGCAATCCGTCCCTGCCCGACTTCATACCAGGACGGCACACCGTGGATTTCATTCAGGGCCCGCTCCATGTCGAGCCGCCAAACCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8843-8509 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEWO01000019.1 Gluconobacter japonicus strain NBRC 3271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8842 29 100.0 32 ............................. TATCCGCCGTTACTCAGAGCGGCAAAAGTCCA 8781 29 100.0 32 ............................. TCCGGCCATTTTATCCCCTCGGTTACAACCGG 8720 29 100.0 32 ............................. AGTTGTTATCTGTTGGGTTCCAGCCCCAAGAT 8659 29 100.0 32 ............................. ATTGCCAATCTGGATGCGGTTGCTAATGCGGC 8598 29 100.0 32 ............................. CTCTGATACGTGCCAGCCTGATCTCCGTAGGG 8537 29 86.2 0 ..............T...........ATT | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : GTAACCGTTCCCGGTTATACCGGAGCGCTGCTTCCTGCAGGACGCGGATCATGGGAACCATGTGGTTACCCATGTCCCTGATGCCTGCAAGTTCCCGATTGCTGGCGGAAAGCAGGGCTGCCACCGAACCAAAGCGTTCCAGAAGTGCTGGAACGAGGGTGTCCACTTTTTCTTTACGGCCCGTAAAAATCTGAACGATCAGGCGTAACAGAGTGTCATCGTCCAGGCGCCGTCCCCGTCCGCTCAGAAGGGCAACAGGGGGCGGAATATGCTCGTTGTTTGTCGGCTGTGGGTTGATGGAAAATGGTACGGTTTGGAAAAGGATTTTTCCTGAGTATTCAGCAAACCCATCATCAGAGGCCGGAGCATTAGTCATTTGTTTTTCTGGCACTGTAAGGCGAAGAAGATCAAGGTAGCATCGGCACTCAAAAAAGCTTAAAAAATCGGTAGATTTTTCGAGGGCTGTTTTTCCTTTGGAAAACAGCTATCTAACAGGAAGA # Right flank : TACAGGAGGCCTTCCTGTCTGAGGCTGCTGAGAGTTGTTGTTTGGGTGCTGATAAGGACATCATGCAAAACAATGGAGAGTGGCCTGAGAGCGTTTTCCAATGTTCGTGCGGCTGTTGAGAGGGCTGGTGCTCTCAGGGCGGGCTGGACGTGTACGCCGATGATGGCTGTAGCGTGCAGAGCCAGGGCGCGAATGGCGATGGCGCGGTTCAGGAAGGTGATATCTTCTTCTGGCGGAGCTGCTTCATCCGCGAGGAGCCGGTTTCGGTTATCCAGATAGAGAACGCGAAGCTGTCCGGCGACTGCGCTTTTCAATGCTGTTTCAAGGTACTCTGTCAGTTGGGGCCAGTTTCCCAGAACCGGGCGTTCCTGGTGTTCCGCTGAAGCGAGGCGTTCTGCGGCGACTGATGGTAGGCGAAGGGCGCGGATGGTATCGTCGTTCAGGCCGGCATTTCGCAGATCGCGCGTTGGCGCACGGAAGACGTTGATGAGGCTTCCGAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 112808-112413 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEWO01000007.1 Gluconobacter japonicus strain NBRC 3271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112807 29 100.0 32 ............................. ACGGATTTACCGTTACCTGTTGGGCCGAAAAC 112746 29 100.0 32 ............................. AACAATGCCGAGTTTAGGCGTAACGTTTGACT 112685 29 100.0 32 ............................. GCGTTTCACTTCTCTTGATAATGAGACTCGGG 112624 29 100.0 32 ............................. GAACCCAACTATATCAAACAGGCTGCGGTCTC 112563 29 100.0 32 ............................. CCGCATCAAGGACAAGTTTCTCTCTGAGTGGG 112502 29 96.6 32 ..............C.............. GCTACTGTCGTGAACACGCTTCACCTGGCTGG 112441 29 86.2 0 ..............C...A....A..G.. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.5 32 GTGTTCCCCGCACATGCGGGGATGAACCG # Left flank : TGATCGAAGACGTTCTCTCCGCAGGCGGCCTCTCCCCTCCCGAAGCACCGGAAGAAGCCATGCCCGTGGCCTTTGAAGACCCGGAAGGATTGGCCGATGCTGGTCATCGTGGTTGAAAATGCCCCACCACGCCTGCGAGGACGGCTTGCCGTCTGGCTGCTGGAAATCCGTGCAGGCGTTTATGTCGGAACTTATGGTAGAAAAGTCCGGGAAATGATCTGGCAACAGGTCTGCGCCTATATCGACAGCGGCAATGCCGTCATGGCCTGGGCCGCCCCGAACGACGCTGGATTTGAGTTCGATACCTGCGGTGCAAACAGACGTTGCCCCGTAGATCTCGATGGATTTCGCCTGGTCGAATTCGGCCCCGAAGCAGCCCTCCCCCTCCTGCCCGGCCCTCTTAATTCTCCCAACCGAAACAGGCGTTAGAAACCCTTTGAAAATCGGTAGCTTTTTGAAGTGGAAAAATTCCCTTCTTAATCATAAACTTGCACACAAGA # Right flank : TCAGAACCAGATCTGTAATACCTGCACAAACCTTACTGCCCGTCCCACATACCCTTGCAGACAAGGAGACATCCCATGAGCAAACTCACAAAAGAAGAACGGGACAGCCTACCTGACGATGAATTCGGGCTCCCTGAAAAACGGGCCTATCCTGTCGATACCAAGGCACGAGCACGCAATGCGAAAGCCCGCGCTACGCAGGAGTTAGAACGGGGGCTTCTCACACCGGAAGAGCGGGATGAAATTGACCGTGCCGCAGATCGAAAACTGAACGAAGACTAGCCAGAATCAAAAACGGCTCCGGATCACTCCGAGGCCGTTTTCTCTCAACACCTAATCAGTTCGCCTGCGCCGCCCGCAGCGGGGCATCAGCAGGAACATCCTTGAGCGGAATCCCTTGATACTTGCCCGTCAGGGTCTTCAGGAACGCCACGATGTCTGCAACATCCTGGTCGGTAATATCATGATCCGGCGTTTCGTAACGTGCCATGGCACGCACA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //