Array 1 2163361-2164365 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066085.1 Escherichia fergusonii strain FDAARGOS_1032 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2163361 29 100.0 32 ............................. TTTTCGAAACCGGCACCCCCTGCGCCTCCGTC 2163422 29 100.0 32 ............................. GAATAAATGATCATGACACAGCGTTGCACAAT 2163483 29 100.0 32 ............................. GTCCTACCTGTTGGCGATTTCAGCATCATCAT 2163544 29 100.0 32 ............................. TGATCCGGGTGTCTAACGAACTGCTGAGCGAT 2163605 29 100.0 32 ............................. TTGCAAAGTGGAACTCGGCGCAGAACGTTATG 2163666 29 100.0 32 ............................. CCCGCCGCACCGGATTCCTGAACTAACTTCTT 2163727 29 100.0 32 ............................. CTACAAAAAACCCATCAGGCAATTCAACGGCA 2163788 29 100.0 32 ............................. GGGTATTTTGGTATTTTGCCTGGCGCTAAAAC 2163849 29 100.0 32 ............................. TTGGCGCGGATCTACAACCCTGACTGACGGGG 2163910 29 100.0 32 ............................. AGTGAGCCAGCCTGGATTGTTGAGGCGCGTAA 2163971 29 100.0 32 ............................. GCTGAAAAATTGGGGCATGAACTGGATGTTGC 2164032 29 100.0 32 ............................. ACGGCGCATTTTTGAGTTCCGTGTACTGCTCG 2164093 29 100.0 32 ............................. GCCTTGGATACGGGCAGGGCGTCCGACTGGTC 2164154 29 100.0 32 ............................. AAATTTCATAACGTCAATTTCGACGGCTGCGG 2164215 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 2164276 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 2164337 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTATCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2179158-2180346 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066085.1 Escherichia fergusonii strain FDAARGOS_1032 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2179158 29 100.0 32 ............................. TGATCCGGGTGTCTAACGAACTGCTGAGCGAT 2179219 29 100.0 32 ............................. AATCAATAAAACAATTTAGAAATATAATGGGG 2179280 29 100.0 32 ............................. GCAATGCGTCGTGCGGATTCTCACGTCATTCC 2179341 29 100.0 32 ............................. CCTGTTGAAACAGATATTCCCTACGCGCTGGT 2179402 29 100.0 32 ............................. AGGCCGCAGTTGTACTCTTGGTGCTGCTTCCT 2179463 29 100.0 32 ............................. CGCCTGAAATCATCGTTCTGTAGTTGTCTAGC 2179524 29 100.0 32 ............................. CCTATCAGAATTGGCGGTGAACTTTTATTTGT 2179585 29 100.0 32 ............................. CGCAGCAGATGCAGGCAGCACAGCAGCAGCAA 2179646 29 100.0 32 ............................. TCTCTCATCTGGTCAGGCATTGGCCCTTGCAT 2179707 29 100.0 32 ............................. GTCACTTCGTTTTTATCAACGGCCAGCACGGC 2179768 29 100.0 32 ............................. CATGCATTGCTCAGCCAGTTTTATGGCAGCCC 2179829 29 100.0 33 ............................. CGGTTATCACAGAGCTGAAACAGAACTGGAAAA 2179891 29 100.0 32 ............................. GCAAACAGAACGGGCACGTAAAATGGAATGAC 2179952 29 100.0 32 ............................. GTTTACATGCAGGCGCTGGTCACGTGGGCTGC 2180013 29 100.0 32 ............................. TAATAGCCGCCCTCTTTCTGATTCTCTTCAAC 2180074 29 100.0 32 ............................. GCTGTAAACCTTGCTGTAAAAGGCCATCGTTT 2180135 29 100.0 32 ............................. GATGGCTGTCATAAAAATTTCTCCGCTATTTG 2180196 29 100.0 32 ............................. CATTACGTAAAAGCGTAGAAGGCGAAAATCAC 2180257 29 93.1 32 .................A........T.. GCAACGACGGTGAGATTTCACGCCTGACGCTG 2180318 29 89.7 0 .T.........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATATTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAACCCCATCAAGACGCCTTTGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCATCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGTCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //