Array 1 5901-5574 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASL01000015.1 Gilliamella apis strain AM1 NODE_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5900 28 100.0 32 ............................ AGTCGATGCAGAATTTACAGAGGTAAAACAAG 5840 28 100.0 32 ............................ CGGACGAGAAAGAACAAGCACAAATCAAGCTT 5780 28 100.0 32 ............................ TCATATGATTCACGTACATAAATCTTTTTGAT 5720 28 100.0 32 ............................ TACTGAGTAGATAGGTACACTATTTACAATTT 5660 28 96.4 32 ....................C....... GCAACGGCATAACCATAAAACACTCCGAAATG 5600 27 92.9 0 ....................C...-... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.2 32 GTTTACTGCCGTGTAGGTAGTTTAGAAA # Left flank : CATCAGCTAGTTCCAATAATAAAAGTTTATTTTTATCAATCAGTTTGATGCTTCTCATTTAGCGACATCCGCAATGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTAGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAACGTCCGAAACTCAAACAACTAAAAATTTTGAGGAACGGGGTTTTTGAACCTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTATTGGTAAAAATAGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TTAATTAAAATTATAACACTCGAAATCCACCAAACTAGAAAAGTTTAGTAAAGGAGTTTTTTAGGTGAATAAATTCACCACATGTTATAATTATGTTTAATTATAATTAACTCTGTAAATATGATGAATAATAGTACAATTGATAACCAATTAAATGAAAAAATGGTGCTTATTTTCAAAGCATTATCTGATCCGGTTAGAATAGAAATCATTAAATATTTAAAAAGTATAGAAACAGAGGTTATCTGTGGTGAAATTGGTCAAGCAGTTGGTATTAGTAAACCCTCAGGAACTTATCATTTTAGGTTATTACAACAAGCAGAATTAATTAATGTAAGAAAGAGTGCTAGGGAAAAATATGTATGGCTTAATAAATCAACATTTGATAAATATATTACCGGGTTTTTTGATAATCTTTAAAATACTCAAATATTGATTTATTGTTGAATTTATCGCTTTGATTTTATCAAATATTATTTTTTATTCCTAGCTGTTAGCCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7177-7572 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASL01000017.1 Gilliamella apis strain AM1 NODE_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7177 29 100.0 32 ............................. TCTTGAAATATACTAGACGGTGAGTTTGAAAC 7238 29 100.0 32 ............................. GTATTTCATTAAAATTATTCCAAAAAACTTCA 7299 29 100.0 32 ............................. GTGGGATTGGTTTTACTTCTCGGTAATATTGG 7360 29 100.0 32 ............................. GTGAGTTGGCATTTAATTAAAACAGTTGCTAA 7421 29 100.0 32 ............................. AAAAAAATTATGGTTTAGGTGCGAATGGCACA 7482 29 100.0 33 ............................. TAACAATAGTAAATGCTGAATCAACAGTTTTTA 7544 29 82.8 0 ..............T......C..TTG.. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 97.5 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTCAACGATGATGGTGAACCAACCAGCACCGCCGGCCGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTAGTGGTGGTCACCCGCTACTTTGGTGGCATCAAATTAGGTACAGGAGGACTCATTCGGGCTTACGGTGGTTCGGCTAGTCACTGCTTAAAACAAGCAGAATTGATCGAACTTATTGCTAGAACATCATTACAATTTCACTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAAATTTTGATGCTGAAGGTGTAACTGTCATTATTGCTATAACACAAGATAATGTAGTCATACTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGCAAAAAAATTGGTAGAATTTGTAGACTGCGTATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : GTTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCTGGCGGTTTTTTATTGCCCAGAATTCCTAAATAACTTACTATTGCCTAAAAAGGAGATGGCATGAAAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAGGAGATGTTACTTGGTGAATGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATCATCGATAAAAACAAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 329-897 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASL01000027.1 Gilliamella apis strain AM1 NODE_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 329 28 100.0 33 ............................ CTATAAACACAATAATAAAAAAACCGAATTTTA 390 28 100.0 32 ............................ TGTACAAACTATCGTACTCTAAAGCTTTTGGC 450 28 100.0 32 ............................ CCTGAGTGCAAATATATAAAAGTATTCACTGA 510 28 100.0 32 ............................ ATGGTGTACCACCGATTTGCATCATTCCGTTC 570 28 100.0 32 ............................ GCCTCGGCGGTTTTTTGTATCAACAAATTTAT 630 28 100.0 32 ............................ TTAGTTAAAAGCTTACCTAATAATTTTAAAAT 690 28 100.0 32 ............................ TGCAGCAGATGATAGCCTGTGCCTGAGTGTTT 750 28 100.0 32 ............................ GATTTAGTCGAAAAGGATTTAACCCAAGTTAT 810 28 100.0 32 ............................ ATTATCGATTACTGTATCAATTTGGGTTTCTG 870 28 78.6 0 .................C...AA.ATC. | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.9 32 GTTCACTGCCGTATAGGTAGTTTAGAAA # Left flank : CACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCACAAAACAACAAACGTCCGAAACTCAAACAATCCAAAAAATAAAGAACTAAAAAATTTTGAGGAAAGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATTTTTAAAAATCAATATGTTGAAAAACCGCTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTAG # Right flank : ATTTATTAAATCTCTTAGATAATTATTTAAAAGACTCGTTTTATACATAAAACAATGTTAATTTATTGCTATCTAGAATTTGAGTTTATTTACTTATTATCATGGATTTGATTCATTCGTCTGATCTTAAAACGATTCTACATTCCAAGCGTGCTAATATCTATTATTTGGAGCATTGTCGAGTTTTAGTCAATGGTGGTCGAGTTGAATATGTGACTGATCAAGGGCAGCAGTCATTATATTGGAATATTCCAATAGCCAATACTAGCTGTATTTTACTTGGTACAGGCACTTCATTAACTCAAGCTGCTGTGCGTGAGCTTTCTCGTGCAGGAGTCATGATTGGTTTTTGTGGCGGTGGTGGAACGCCTCTATTTTCCTCGACAGAATCGGAATTTGCCTGCCAATTTTTTTCACCGCAAAGTGAATATCGTGCAACCGAATATCTGCAAAGTTGGTGTCAATTCTGGTTTGACGATAATCTCCGCCTACAAGCTGCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 743-474 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASL01000041.1 Gilliamella apis strain AM1 NODE_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 742 28 100.0 32 ............................ ACAAGCAACCCGCAACCCGCATATAGATTTAG 682 28 100.0 33 ............................ TGGTAAATGTCGAATTCCTTCACGACCCACCGA 621 28 100.0 32 ............................ ACGGTATTAATAATAATCTTCGCAGTTATAAT 561 28 100.0 32 ............................ TCGCCCCGGATCCGCCCCTTTGCCATTATCCC 501 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : CATAAGAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATCCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTATTCACAGTACAGAAACAACCGCAAAACAACAAAACGTCCGAAACTCAAAGAACTAAAAAATAAAGAACTAAAAAATTTTGAGGAACGGGGGTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATGGGATTCTA # Right flank : ATGATACAATCTCTTTATTATTTATATCGTATGTTATACCCCAAAATTGAAAAATACATTTTCAAGAATTAAAACTATGTTTTAATAACCTAACTTAATAATAATATTTACAAAATTTAACAAATAAACAATTAAATACTATTGCTTAGATTTTTTTTATGACTATACTTTAAGTGTTTATAATAAACAATATTCGACGGGTATTTAGCCGATAAAAATAAAATAAAACCAAAAAAATCATATAATTACTTGACAGGAACGTCAAAATGCATTATAATTTACAACACCAAACACCAAACACCAAACCTGCCCAACCTATAATTTAACGTTAGTAAAGTTAAGCACGTACGGTCTATTATCTCACTACAATTTATTTTTCCAACAAATTTGGCAAGGGTTTTCAACATTTCTTAGTTTAGTCTTTTTATCTCGGCCGATGGTTTTGGTATTAACCATGGTTGTTTTACAGTCTAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12530-12318 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASL01000048.1 Gilliamella apis strain AM1 NODE_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12529 29 100.0 32 ............................. CCAGTCCATTACTTCAATACCTGTTATCCTTT 12468 29 100.0 32 ............................. CGAGGTAAATAAGCTTTCCATTGAATCAATTA 12407 29 100.0 32 ............................. CGAGGGCACGAACAAGAGCCTATCGCTATATC 12346 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTGTCTGCTGGTGGTATTGAACCGCCCCCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCTCCAAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAAATATCTATATTTAGA # Right flank : TTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTCTAATGATAGCTATTTATAAAAATAAAAGTTAATAATCATATGGATAGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAACATTAATCGTAACTTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCTGGCAAAACAACAGCCATCAATACTGTTGCACGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACCCGTGAACCTGGCGGTACACCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACTGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAATT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.20,-8.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 732-164 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASL01000078.1 Gilliamella apis strain AM1 NODE_78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 731 28 100.0 32 ............................ ACATCAGCCAATCGTTTTGCTTCTTCTTCCTT 671 28 100.0 32 ............................ AACTGCTGTTGGTAAATATGGTACTGGAGCAA 611 28 100.0 32 ............................ AGATGAAGACCAGAGCGGGCAATCATCATCGA 551 28 100.0 32 ............................ ATCATGATGTAGAGTTTCCATTTTATTTCCTT 491 28 100.0 32 ............................ TGAGCCCGAAGTAAAAAAGGAGACGGTAAAAG 431 28 100.0 32 ............................ ACAGATAATAAGGTAATGGTAAAGACATATTT 371 28 100.0 32 ............................ ATTCGACAAATACCGAACCTCTGGATCTTGTC 311 28 100.0 32 ............................ AAATAATTTTAAACATATGCAATCTAGTTCTC 251 28 100.0 32 ............................ TGATAAGAAGAAAACTAAGAAAACCAAGAAAA 191 28 78.6 0 .................CTTT....TT. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.9 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : GTCTATCCTTAGCTATTATTTTTTAGTTCTTAGGTATTGAAGCTGAGGATAAGAAAAATAACGTTAGGGCGATAAAAGCGATTTTGTGGCGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATGGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAAAAATAACCGCAAAACAACAAAACGTCCGAAACTCAAAGAACTAAAAAAAATTGAGGAAAGGGGTTTTTAAAACTTAAATTCCTACTTATTACTAACCCTTTTTTTTAACTTAAAATAAAATTATTAAAAATCAACACTTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATGGGATTCTA # Right flank : AGTAATTAAAATGGATTTTTAGTATTTAAAACTCGCTGTTCTCAAATTTATCTATGAAATAATTAAAACGCTTATATAAGCGTTTTAACTCTGATTAATATCATTATATCTACTATAAACTATTAGAACATTAATAGTTGTACAATTAAATTGCAGTAATATAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : GTTCACTACCGTGTAGGTAGCTTAGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 11950-12216 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASL01000007.1 Gilliamella apis strain AM1 NODE_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11950 28 100.0 32 ............................ GTGAAATGTGGGCGATGATTGCTCCAGAATGG 12010 28 100.0 32 ............................ TGCAGTTACTGCAGCAACTGATACAGATATAG 12070 28 100.0 32 ............................ ATGTCGACTTTTTGAGTGTCAAATGTTTTGAC 12130 28 96.4 32 ..........................T. AGACACAACCCTTTTTAAATTGCTCGACGATA 12190 27 89.3 0 .......G............-.A..... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : TAGGTATTGAAGCTAAGGATAAGAAAAATAGTGTTAGGGCGATAAAAAGCGATTTTGGGCGCGACATTCGCAACGTGCTGACAACTGAGAGAGGTTAGCATGACAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACGTAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCGACGTATAAAAATAACCGCAAAACAACAAACGTCCGAAACTCAAACAACCAAAAAAATTGAGGAACGGGGTTTTTGAAACTTATAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTAAAAATCGATATATTAAAAAATCACTTAAAAAAAGGGTTTTTATTGGTAAAAATAGACTTTGCCTTTTTGCCAACAACATTTATAGTATGTGAGATTCTA # Right flank : ATATATAAGTGGCGGTATAATCAAGAAGTACACTGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAGAGGGGATAAAGGGTATATTATTTCTAATAAACAGCAAATAATCGATGCTCTTTTCGAGCTATTAGTGTTCTTCTTTACAAATGTTAACAATTAAACAGTTAAAATAAGTTGCATCGAGTTTTTTCAATCACTATAATTTTTGAACTATATTTATACAAATGGATAGATTTTATACTTTTCGGTATAAAATTGTAAAATAATCATTAATTTAATTGACAGGAATGTCGGATATGTATTATAATTTACAACACCAAACACCAAACACCAAACCTGCCCAACCTATAAATTCACCTTTCTAAAGTTAAGCTCATATCGTTTATTATTTAACCGCAGTTTATTATTTCAGCAATTTCCAAAATTTCCGAAATTCCGGCAAAATTTTTCAAAATTTCTTAGTTTAGTCTGTTTATCTCGGCCGATGGTTTTGGTA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 34395-35082 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASL01000007.1 Gilliamella apis strain AM1 NODE_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34395 28 100.0 32 ............................ AATGCAAGAAAAATGCATTAACTCAGACTCGT 34455 28 100.0 32 ............................ GATTTTATTCCAAGCAATCATCGCTATGAAAA 34515 28 100.0 32 ............................ TGATGCTGTATTATGTACTGATAATGCGAAGT 34575 28 100.0 32 ............................ AGTGGCCAACCAACCATTTATTACCACAACGA 34635 28 100.0 32 ............................ ATTGTGTCCATCTACAGTTAATCTCGCCTTTC 34695 28 100.0 32 ............................ TATCCCTTACATTTATAGAAAAGCAAATAAAT 34755 28 100.0 32 ............................ ATGGTTACATTTTGTACGGCTTTATTTGTCTT 34815 28 100.0 32 ............................ CCAATGCAGTTGCGAATAATCGCCACCACTGA 34875 28 100.0 32 ............................ AAAATTAATAAAACATAACCGATTGAAGAAAA 34935 28 100.0 32 ............................ CTGGATTCAAGATTTCGATTTAACTGTGTTAA 34995 28 100.0 32 ............................ AATCACGCCATTCTTAACAGACCCGCGAACTT 35055 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTTACTGCCGTGTAGGTAGCCAAAAAT # Left flank : AGGTTAGTTATAACATCAGCTATTACTAATAATAAACGTTTATTTTTAGAAATTAGTTTAGTGCTTCCTATTTAGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGTGCGTTAAGAGCTAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGCATAGAAATAACCGCAAAACAACAAACGTCCGAAACTCAAACAACCAAAAAATAAAGAACTAAAAAATTTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATATTTAAAAAATCAATATATTAAAAAATAGCTCAAAAAAAAGGGTTTTTATTGGCAAAAATAGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TTCAAACAAACCACCTTCGGGTGGTTTTTTATTGCACAAATCTTTTAAATAACATACCATTGCAAGAAAATATCAAGATTAAGGAGATGATATGAAGAAGATTGTGTTGTGTTTGTTATTTGTCCCTTTTTTTGTTTTTTGCGATTCAGTAAAAATCGGTGATTGGGTGGTTGATAATCAAGAAGATCCTATTACTGATCAAAAATCAGTTAGAATATTCATATTTGATAGCACAAAATCTAAGAGCGATAGTGCTGCGTTTTTATTTAATTGCAACTCAGTTAATCTCACATCGTTTGTTATAAATGATTTGCCAAAAGAAAGTGAGAGAGGCGATTCAACAAAAATCATATTAAGAGTGGACAAAAATACTCCAATTGAAATGAATTGGACTAAGGGAGAGCTAGGATATGAATATTCTGATATTAATGAAGTTAGCGATTTGATAAAAAATGGGAAAAAGTTAATCATTAGAGCCAATTATGGAAAAACTAAGGATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTGTAGGTAGCCAAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //