Array 1 69687-69250 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXJG01000004.1 Helicobacter burdigaliensis strain CNRCH 2005/566H NODE_4_length_84905_cov_539.772, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 69686 37 81.1 29 TT.....CA.AA..A...................... TGAAGAAGCAGGGATAAGAGAATGTAAAA C,A,A [69668,69670,69674] 69617 37 100.0 29 ..................................... TGCAGAAACAATCATAATTACAAGAATAA 69551 37 100.0 29 ..................................... AGAGCTAAATATTTATTATCACACAAATA 69485 37 100.0 29 ..................................... TTCAGTTTATAAAGTAGTTAAATTCCTTG 69419 37 100.0 29 ..................................... GGTATTTACTTCGATTACGACTATCAACC 69353 37 100.0 30 ..................................... AGCGGTGAGGTTTTAGAAAAAGAGAAATTA 69286 37 97.3 0 T.................................... | ========== ====== ====== ====== ===================================== ============================== ================== 7 37 96.9 29 AGTTTTAGTCCCTTGTTAAATTACTTTATGCTACAAT # Left flank : ATAACCTCTATGCTTTGCAATGTGTAAAATTACTCTTGCTAATTCCTCTTTGCTTAAAGCTTCGTTTATTGCCTTATAACGCAATTCGTAGGGACTTATTAATTTTCCTTTAAAGGCTTTGGGTAATACCCCATCTTCTGCAATATAATCTTCATATTTTAACCCAAATTCACTAGACAGAATGTGCTTCATAGCTCTCATTCTTGCACTTCTTCTGCTTAATCTGCGTCTAGTGCTTCTTGCATTGCGCCTTGGTAATGCTAACGATTCTTTATTTTTAGGATTTTCTGCTTGAGTAAAGATTCTAACCCCACAATCTTGTAATTTATTATCCTCTACAAAAGCCCACCCAATAGAACTAACCCCTATATCAAAACCCAAAATCTTCATTTCCTCAATCCTTTTTATATTTAGTTTAATAATTATACATAACTTTTATTGATTATATAAAACAAGGGGTAATTTTCATTCTAAAATGCCATTTTACCTTATAATTTTAC # Right flank : AGTCTCTTTAAAAAGCAAGTATTTAAGAGGGTTTATGAGGGTATTTAAGTAAAAAATACCAAAAAATATGCTAATATCTTTTAAAGTAATTTAATAAGGGACTAAAATAAGGAGTTTGCGGGACTCCGTGGGATTACAATTCCCTAAAACCGCCTAATAATTCTAAATAATCATCAAAATTCAAGCAATATCTAAATTTATTATTGTTTAATAGCCTTGTTAGCTTAAAAAGCCACTTTTATTAAAAGTCAAATTTCATATATCAAATATTTAATCACATTAAAAACTTACAAAAAATGTCTTATTAAAATATCTCAATATTTTCAAACTATCAAGCTTTAATATCTAGCCCTCTATTTTGCAATCTTTCTAAAAGCCCTAAAATATCCACCCCTTTTTCTCTTTGTGTTTTTATAAATTGCTCCCAAAAACTTAAATTTATTTCTTCTTTATAAGTTTCACTCTCACTTTTACCCTGTATGGGCTTAAATGGCTTTTTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTAGTCCCTTGTTAAATTACTTTATGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 74303-74604 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXJG01000004.1 Helicobacter burdigaliensis strain CNRCH 2005/566H NODE_4_length_84905_cov_539.772, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 74303 36 100.0 30 .................................... CTTAGAAGCTTCTGCACCTAGCTTCATTAC 74369 36 100.0 30 .................................... TTATTAGGGTGTGTCCTTAAAATAGGCAAA 74435 36 100.0 31 .................................... CCATACGCAAGAGATTACATTTAAAGCAAAT 74502 36 100.0 31 .................................... TATAATTTGTATAGACTCTACTGCTGGCGAG 74569 36 86.1 0 ......................T...AA.A.....A | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 97.2 31 ATTGTAGCATAAAGTAATTTAACAAGGGACTAAAAC # Left flank : GCTTCAATTTAGTGTGTATATGCGGATTACAAAAGGTATTGAATCTGCTAAAAATTCTATTGAGGCGGTAAAAAGAGAATTGCCTCCTTTTGGAAATATTAGAGCATTAATTGTTACAGAAAAGCAATTTGATAATATGCAATTACTTTTGGGTAATACAAGTTTTAATGAGGATATAAATCAGGATAAAAATTTGGCTTTATTTTGTATTGATAATAAAGGGGATTATCAATACAAACAAGATAAATATGGTAAAGATAAACCAAAAGAAACACAAAACAGAAAAGATAAATTTAAGCAACCAAAATTATTTGAATTTTAATGAAAGTCTTCTAAGGATTTATATTGCGGTTTTAGGGAATTGTAATCCTGCGGAGTCCCGCAAACTCCTTATTTTAGTCCCTTGTTGAATTGCTTTAAAAGATATTAGCATATTTTTTGGTATTTTTTACTTAAATACGCTCACAAACCCTCTTAAATACTTGTTTTTTTAAGAATCT # Right flank : ACTTTTTGTGGTTGTGTTTTTATAATTCTTATTTCTTTGATTGTTTGCTAATCCTAAAACAACACCAATCCCAAGACTTCCTGCATTTTCCATTTTTAACCTTTTTTAAGTGTTTGTGTTTTAAAATTTTTGCATGAGTGAAAAATTCCCCTTAACAAAAAGAGACTATCTCTATTCATACGGCTTTATGGTTGCCTGTTATATTGGCATTTTTTATGTGGGCTATAATAATGAAATCTCTTTTTTGCCAATATTCTCGCAGTATTTTTAGCAACTTCAATCCTTATTCTCATAGGTTATTTAATTGGTTTATTACAGCTTATTCAAGGTTTATTTATGATAAGTTGCGAAATTTTATTTTTTATTTCAAGGCTTATTCGCAAGCTTTTTAAAAAACTTTTTAAACCCAAACAACAAGAGCCAAAAAACCTAGATGAAATTTTAAGTAACAAAACTAAAAGCTCTTAGACTTTAAGAGCTTCTTTGCATCTTTGTATTTT # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCATAAAGTAATTTAACAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //