Array 1 140031-129872 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXV01000008.1 Halovibrio variabilis strain NBRC 102410 sequence08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 140030 28 100.0 32 ............................ TTCCTGCGTGACCCTTGGGGTACTGTGGCACC 139970 28 100.0 32 ............................ ATTGGCGACCACCTGGAAGCGATAGGCGTTCT 139910 28 100.0 32 ............................ AACCGAATGCACGCATCGAGCATTGATGTTGC 139850 28 100.0 32 ............................ AACAGATACGCCCTGCTGGCCCGGCGACCACT 139790 28 100.0 32 ............................ CGACGCTTTACTTCTTTGGGGTCCGTCAGCGC 139730 28 100.0 32 ............................ GTGAACGCGTCTACCCGCTTACGATCCTTGCC 139670 28 100.0 32 ............................ ATTAAAAACGCTTTTATCTGCCAGCTGTCTAG 139610 28 100.0 32 ............................ TCGATATGGATACCGCCGTTAATTACCAGCCC 139550 28 100.0 32 ............................ GCGAGATAGCGAAACTAACCAGCAAGCGTCAC 139490 28 100.0 32 ............................ GCATCAATCCACGCAGAGGAATTAAAAGCTGA 139430 28 100.0 32 ............................ TGCTGACTGACGCTCAAACGGCCAGAGCGGCG 139370 28 100.0 32 ............................ ATACCCCGGCGCTAGCACGTCCAAGACGGCGT 139310 28 100.0 32 ............................ CCGAGAACGTCAACGTTGGCGAATACTGCGCC 139250 28 100.0 32 ............................ GCCAGCGATCAAGGCTTTTGCGATGCCCCTTG 139190 28 100.0 32 ............................ AGTTCGGTACGTTCGTGCAGTCGCTAGAGGGC 139130 28 100.0 32 ............................ AACGCAAGCAATTCCAACTTGCAGAGCGTCTG 139070 28 100.0 32 ............................ ATTGTGACTGACCCGCGTCAAATTCAAGATCA 139010 28 100.0 32 ............................ CAATCCAGCGGGCGAATGCTCGACATGGCCGA 138950 28 100.0 32 ............................ AGGCGGATAGCTTCGCGCTCAGTGTCGGCAAT 138890 28 100.0 32 ............................ ATACTTACTGATTAAGCAGGGTGTTTACCAGC 138830 28 100.0 32 ............................ ATGTCGTCGGCTAATGCTGGCACAAAGGCGGC 138770 28 100.0 32 ............................ TGAGGGCAGCAGCACATCAATAAACCAATCAC 138710 28 100.0 32 ............................ AGCTCCCACTGCAACCGGCGTAGCTCGGCCAG 138650 28 100.0 32 ............................ AGGGTGCCCAGCATGTGGTGCAGCGGGCCATT 138590 28 100.0 32 ............................ CTTACCCACGGCAGCAGCTTTTGCTTTTAAGC 138530 28 100.0 32 ............................ GTGTCAATCGCGGGGCTACCGTTGCAACCGGG 138470 28 100.0 32 ............................ AGTCGAAATCGTGCGTATACGTTTGCGAGCCT 138410 28 100.0 32 ............................ TTTCCATACGCCATCGTCGCCCTTCGCCTTGA 138350 28 100.0 32 ............................ TATATCGAATACCACGGCACACCTGTTATCAC 138290 28 100.0 32 ............................ CTGAAAAACCAGCAAGTCAGCATCTGGCTCTC 138230 28 100.0 32 ............................ AATAGCAACCTAGTGATGGGTATCAAGGAGGA 138170 28 100.0 32 ............................ ATGTCAAAGCCCGCGCATTCATACGTGTGCAC 138110 28 100.0 32 ............................ ACTGGAAATCAGGGATAGGCTCAACGGCTGGC 138050 28 100.0 32 ............................ GATATGGCGTCGCGCTCTTCGCGGGTGGCATT 137990 28 100.0 32 ............................ AGCAGGAGGCGGACCGTACGCAGGTTGACAGA 137930 28 100.0 32 ............................ CAGCGCCACGCCGTAATGCGCGGCCACCCACT 137870 28 96.4 32 ...........T................ CCTCGCAGAACGCGCCCTATCAAGTGCTCTTG 137810 28 100.0 32 ............................ AATAGAAAAAAGAAAGCCCCGATAGGTGCTTA 137750 28 100.0 32 ............................ TTGTTAATCATGCCCAGCGCTGAGGGGTCGGA 137690 28 100.0 32 ............................ GAATCAATCTGGATGGCGACGTTCGCCACGTC 137630 28 100.0 32 ............................ TGGAAGATGGTCAAGAGCCGGTCAGCTTCATG 137570 28 100.0 32 ............................ GCATCGCCTGCCCGCCGGATACACGGCGCCCA 137510 28 100.0 32 ............................ AGCGCGCTATAGAGTTCATGTAAGCAAGTGAC 137450 28 100.0 32 ............................ ACCTGCAGGCAATGAGCTGCCCCCACTGCAAC 137390 28 100.0 32 ............................ TAAACAACGTCGCCCGCTTCGCGCTCACGATC 137330 28 100.0 32 ............................ AACAACCACAAGCCGATGATTCTGGAAGGTGG 137270 28 100.0 32 ............................ CAACGAATTGACCCAGCATCGCCGCTACTGTT 137210 28 100.0 32 ............................ TTTGCTGAGACAGGTCTTACAGGCCGGTAAGT 137150 28 100.0 32 ............................ TATATCAAACTGGCTTTTACAACTGGTATCTG 137090 28 100.0 32 ............................ TTGCAAGCTTCGCTCATTTCATCGCGGGTATA 137030 28 100.0 32 ............................ TTTCCAAAACAACACTAAATCAATGGTTTTTC 136970 28 100.0 32 ............................ CGAGAGAAACGGAGCGTGTTATCACTCGGGTA 136910 28 100.0 32 ............................ AATGGGAACCCCGCGTCCGCATCACCGGCACA 136850 28 100.0 32 ............................ AGAACGGGTACCCCTCATGGCCAACGCTCGAC 136790 28 100.0 32 ............................ ACGGCTTGATGCTTATCGGCCGGTACGTGTGC 136730 28 100.0 32 ............................ TTTAAGAACGTGGCGATTGATGCGCTTGCCGA 136670 28 100.0 32 ............................ ACTATAAAAGCCGTAACCGGGCGCGAGTTCTC 136610 28 100.0 32 ............................ AGCGTATTACAGGCAAAGGGCAATCGCCATAT 136550 28 100.0 32 ............................ AATCCCCGCCGGAGTCAGCAGCAAGTTGACAT 136490 28 100.0 32 ............................ ACCAAACAATGTCCAGAGTGCGGCTGTTCTCG 136430 28 100.0 33 ............................ CATCCGGGATAATAAAATTACCCGTTGCCTCGA 136369 28 100.0 32 ............................ TTACAGCGAACGGAGTGAGACCCATGGCGAAT 136309 28 100.0 32 ............................ GTGATCGAGCAGCTGGGACGCCATGCCGACAA 136249 28 100.0 32 ............................ ACACAACAAGCGTATCGCCTGCGCGCAATGCC 136189 28 100.0 32 ............................ AAGCATCTATTGCGGCGACGCATTTGGAGTTT 136129 28 100.0 32 ............................ GCTTGGTCATCCCCCAGCGCTCACTAAGCATT 136069 28 100.0 33 ............................ GGCTAGCCCTTTGGTTAGGGCTTTCGCCTGGAT 136008 28 100.0 32 ............................ AGCTCAAGCGCGCGTTAGAGCTAAACGACAAA 135948 28 100.0 32 ............................ GCCGTTATGTGCTGGCTGGGCGTACTGCAGCA 135888 28 100.0 32 ............................ TGTGCAGGGCAATCGTTACGGTCATAGCCGCC 135828 28 100.0 32 ............................ AACCAGATTGCCGCCCGCGAATACCGTTATAT 135768 28 100.0 32 ............................ ACCCACACGACCAATAATATCATTGCTCAGCA 135708 28 100.0 32 ............................ TCAATGCGGAATGAGCGAAAGCACATGCAGTG 135648 28 100.0 32 ............................ ACATTGACTGACCAGTAAAGCGTTGTACCGGA 135588 28 100.0 32 ............................ AGTTCCGAGCCAGCTTCCGTTCTACCGGGTCT 135528 28 100.0 32 ............................ TTTACCGCCCCCAGGCGCAGCCGCGAAAGACG 135468 28 100.0 32 ............................ AGCGTTGCCCCCTGCGACATTGCCCAGCAGTT 135408 28 100.0 32 ............................ AAAAGACTGAACTAAAGACACGCTTGGAAAAG 135348 28 100.0 32 ............................ TGTCGCTGAAAATACGACGAATATCACTAGAC 135288 28 100.0 33 ............................ GCTTCCAGTGTGTTACTGGCCCTTCACAGCAAT 135227 28 100.0 32 ............................ TTCAAGCAATGATGAAACGTTAAAATCATCCA 135167 28 100.0 32 ............................ ACAAACAATGTTTAAATTATTATCTATGGCTA 135107 28 100.0 32 ............................ TCGTTCTTACAGGCTTGCTCTTAGCGCTCTCA 135047 28 100.0 32 ............................ GGGCCACGCCACACCATGGCAGTGCCATGCAG 134987 28 100.0 32 ............................ ATGCAACTCTTCATCGCCGCCAACGGGAAAGC 134927 28 100.0 32 ............................ ACTTCGGCATCAAATACATCAAGATAACTTTC 134867 28 100.0 33 ............................ CCACCCGCGCCCACTACCCGCGCCGCGCTATCG 134806 28 100.0 32 ............................ AAAGAAGAAGCCAAGAAGAAGGAACGCAAAGC 134746 28 100.0 32 ............................ TGATTAAGCAGGCGGAGGTGCTTGAGACTATG 134686 28 100.0 32 ............................ ATTTCCAGTATTGCGGGCATGCGCTACGTTGA 134626 28 100.0 32 ............................ CCGATCATGCGGTATGGGCGCCTCGTCTGCTC 134566 28 100.0 32 ............................ AACCCCAGGCAGCACAGACGCCATCCTAGAGG 134506 28 100.0 32 ............................ GACCAGCTGAACTGATCCCAGTTAGCGACATC 134446 28 100.0 33 ............................ CTGACGAAGCTAGAAGAAGACCTGAATTACAGC 134385 28 92.9 8 .......................T...C TACTCTAC CC [134359] Deletion [134350] 134347 28 100.0 32 ............................ AGCAGCAGATTGATGACGCCAACCAAACCGCA 134287 28 100.0 32 ............................ ATGGTCAGGCCTTCTTTTAGCGCGATCTCGGC 134227 28 100.0 32 ............................ ATTGGCGAAGATGAAGAAAAAGCGCGCCTAAA 134167 28 100.0 32 ............................ ACTACGCAAGCGACAATGAGCAGCCGCGAGAT 134107 28 100.0 32 ............................ AGTTGCTGCCTCACACCAAAGGCGAGTGGGCG 134047 28 100.0 32 ............................ ACCTATGTACATTCGTACTAATGTGCTTTTGT 133987 28 100.0 32 ............................ ATAGTCACGACGGATAGCAGCGCACCGCTTGG 133927 28 100.0 32 ............................ TGCCACAGGTGCAGATCGAAGGGGAAAAAGCC 133867 28 100.0 32 ............................ GCCAATGCCACCGGCTATGTGGTGCCTGGCGC 133807 28 100.0 32 ............................ AGAAGGCGCAGCAGTTGGGCGGCAAAACGGCA 133747 28 100.0 32 ............................ CTCAAGCTCTGTTACCAGCGCTGCCAGCATTT 133687 28 100.0 32 ............................ AACGGCGTCGACCGGGTAAAAGAGTTTACTGG 133627 28 100.0 32 ............................ ATCTCTGCATATTAGTGTTGGCGAGATGAACG 133567 28 100.0 32 ............................ ACCGTCGAGCGCTCGCCCAATAGCCACATGGC 133507 28 100.0 32 ............................ GGCAACATTACCGTTGAGCTTGACACTAAGCC 133447 28 100.0 32 ............................ ATGACGGCATAAGTGATGGGATAGACGACTTC 133387 28 100.0 33 ............................ AAGCACAAGTCGCTAACGCTGGCGTGGAAGAAT 133326 28 100.0 32 ............................ AACCTCGCCACCGCCAAAGCCTAGCGCGCCAC 133266 28 100.0 32 ............................ GTGTTGCCGAACACTTTACCCATGAAGTAGCG 133206 28 100.0 32 ............................ TACAACGCCAGGGGCGCTAATGACAATACTCG 133146 28 100.0 32 ............................ TTGACCGGCTTGCCGTCATATTCCCAATTGCC 133086 28 100.0 32 ............................ AACCAAAATTCGCTAAGTAGCCACCCTCTGCA 133026 28 100.0 32 ............................ ACCCCGCAGAAGATCGCGCAGGGCGAGCAGAT 132966 28 100.0 32 ............................ TATCCATAGCCAATTGATTAAATTGCTTTCCG 132906 28 100.0 32 ............................ AGGAGAACGCCGACCTGCTCCAAGGTGAGCGT 132846 28 100.0 32 ............................ GATGCGGCAAACATGGCGAAGCGTAGCTTTTA 132786 28 100.0 32 ............................ ATAAGGTCGTTTTGTACGGCGCTAATGATCTG 132726 28 100.0 32 ............................ AGATTACCGGGCGTGGTGTATTTTTTGCGGCG 132666 28 100.0 32 ............................ AAACACTGCTTCTCCCAGCGATGCGCCTTGGC 132606 28 100.0 32 ............................ TAGCCTAGCCGAGTGAGCTGTATGTGCGTCAC 132546 28 100.0 32 ............................ ATTAACGGCTATAGCCGCAATGGGCAAATGAT 132486 28 100.0 32 ............................ AATACAGACTCCCATCCCAACCAGCACACCGC 132426 28 100.0 32 ............................ CTCCGGTTCGTGATCGCGGTCGCTTTGCACCA 132366 28 100.0 32 ............................ ATCACGGTATCGAGCGCCTCGCTAGTCATCAG 132306 28 100.0 32 ............................ GTTACTAGTGCGAAGTGACCGCCTTTCACCTG 132246 28 100.0 32 ............................ AGGGGAAAGCTGGGCCAATACCTGTGGTAAGC 132186 28 100.0 32 ............................ AACAACAGACAAAAAATCTAAGCTGTTTGCAT 132126 28 100.0 32 ............................ AAATCTTCAGCGGTCAAGCGCTGGCCGGGAAT 132066 28 100.0 32 ............................ AGTCGAAACAATTATCATCACCGTAGTAATTA 132006 28 100.0 32 ............................ CATAGAATTTAACGCCCTGCATTACGATGTTT 131946 28 100.0 32 ............................ ATGACGACCAGGCGCATTTTGTGACGCACCGC 131886 28 100.0 32 ............................ TACGTGTTCAGAGAGTGTGCGTTTAATTACTC 131826 28 100.0 32 ............................ AATACCGGTGTACTGGCTAAACGTGTCTTGGG 131766 28 100.0 32 ............................ GAAACGTGCGGGCAACGCTTGCGGGCGGTATT 131706 28 100.0 32 ............................ TAACGGGACGCCCTCTTGATCGGTAACACCAC 131646 28 100.0 32 ............................ TACGGCTTGATAAGCAGCTATCGCGCTGGTAT 131586 28 100.0 32 ............................ ATCATGGAAACGCTTATCTGGGAGCACAAGCT 131526 28 100.0 32 ............................ TCATCAATGATGCCGGATAGTCCAAAGGCATA 131466 28 100.0 32 ............................ TGTAGCAGTGGGTTCTTTCCAAGCGCTCGTAA 131406 28 100.0 32 ............................ TAGCGGAACCCTTACCGACCTTGTTTGCGTGC 131346 28 100.0 32 ............................ CTGCACCATGAGCGCCGATTGCCCCATGATCG 131286 28 100.0 32 ............................ TTACACAAAATAAGGTGCAGCGGGATAGTAAT 131226 28 100.0 32 ............................ TGGAGCACGTTTATATCAACCGATGAATTTGG 131166 28 100.0 32 ............................ AGCGGCCGAATGCTGGACATAGCCGATTCTGA 131106 28 100.0 32 ............................ ATTTTTAATCGCAATATCAAACCCTTTAACTC 131046 28 100.0 32 ............................ GCCACCAGCGGGCCGTTTGAGATTGACAACAT 130986 28 100.0 32 ............................ ACACCGCTACCGCTCCAAGGCACGGTTAGCTG 130926 28 100.0 32 ............................ TACTTGCTGGCGGAAAAGGAACGGATGTCCAT 130866 28 100.0 32 ............................ GCAATCAAGCCATGCTGGAAGCCGTGACCGCC 130806 28 100.0 32 ............................ ATGCCGGCACCCGCCGCCATTAAGTAGGGGTT 130746 28 100.0 32 ............................ TGTCAGCACACCGAGCAAAAACCACGTTACGC 130686 28 92.9 32 ...............C....A....... TTACAGGGCGATGTCGTAGCGCTCGGCAACGT 130626 28 100.0 32 ............................ ACCACCGCTAGGTTTCTCGGCGCTCTTCTTTT 130566 28 100.0 32 ............................ TTAACCACAAAGGTGAGTCTGAGGTCGTTCCT 130506 28 100.0 39 ............................ AGGAGAACTCGATGATCTATGATCTCTTGGCCCATGTCC 130439 28 100.0 32 ............................ AATGGCGGTGTAGATGTTGGTGATCAATACCG 130379 28 100.0 32 ............................ ATTCGATGACAGTTGCCGGTCGCACGCTGTCC 130319 28 100.0 32 ............................ GACAAGAGGCCATGGAGCGGTTATCTCAATAT 130259 28 100.0 32 ............................ TTCAAGGAAGGTGCGCCGTGGCTGGCGCCCCA 130199 28 100.0 32 ............................ TCAGAATGGAGCGGCCCAACAGGGCGGCTATC 130139 28 100.0 32 ............................ AATCAATAGTCCGTTTATATTCAAAGCCAGAA 130079 28 100.0 32 ............................ TGGGGATTTTGACCTTTGATGGCTCCGCCATC 130019 28 100.0 32 ............................ AAGACCACGCGCCCTCGTCCGGTTGCCCTTCG 129959 28 100.0 32 ............................ ATTGCGTCACTGGATATGTTCGGGGCTGCATC 129899 28 82.1 0 ....................T.TT.G.G | ========== ====== ====== ====== ============================ ======================================= ================== 170 28 99.8 32 GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CACGGCTGGAGCAGTTGATGGCGTCTGACTGGCTAACTGGCATGCGTGACCACACTCAAGTCAGTGAGTTGCTTGTTGTGCCCGCTAATGCACAGCACTTCAACGTCGCGCGGAAGCAGTTCAATACGGGCAGCCCAAGCCGTGCCAAGCGCTACGCCAAACGGCACAATGTTTCAGAAGAAGAGGCGCGGAAAATTTACGCCAAGTTGGCTGAACGCCGTATTGCGCTGCCCTTTGTGCAGATCAATAGCCGTTCTACCCAGCAGCGCTTTTGTCTGTTTATAGAACACAGCAAACCTCAAGAAAGCTCGGTGGCGGGAGCGTTTAACCACTATGGATTAAGCAGTAACGCTACCGTGCCGTGGTTTTGACCCTTTTTTTCAACATGAAAATAGGTAACCAATAATCAGTGACTTAGCGGTATCGCTCGAAAAAGGGTGATACCGCTTTTTTAGGCTAATGCTCTTTAACAATCAGCATGTTAAATTTAGTAAGCTCTA # Right flank : AGCTGGCTTACCATGGCACCGCTGCGCGGTGCTTCCGCGGGCGCGCCTGAGGCTTACCACGCGCTACTTGGAAAGTGCATGGCTTGTAATGCGTGTATTGCTGAAGCGCTGTGTAAATTTCCACAAAAAAGCCACCGCGTTGGGTGGCTGTGTCTGTTGAGTTTAGAAAACGCTAAGCCCTAATCCTCTTGCGGGGGTGTTTCCAGGGCGCGCTTGTCGTCGGGTAGCCGGACGATATGGCCAACTTCAAGTTTGTTATGGTGCTGATGGCGCTCGCCGTTTGAATCAATGATGGCGACGACTTCACCAATGCTGACGGCGTCATCTTCGCGGTAGGCGTCTACTTTGATACGCACCATGGCGCGCGAATACCGGGCGGAGAGAATGTCGCCAGGGGCAGGCTGGCCGTCGTGGTTGGGGTCGTTCTTGAAGTACTGCATGACGCTGGCGCTGCCGGGGTCGTCCCATTCGATATGTTGATGCATCGTTGCCGTCCTGGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //