Array 1 64914-65075 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWZ01000014.1 Geomicrobium sp. JCM 19037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 64914 31 100.0 35 ............................... AATTGAAAAGCATCCCGCAGACCATTTACGTGACG 64980 30 93.5 35 ........G..-................... GTGGTATAAATAGATCATCAATCAAATACTTTGCG 65045 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 3 31 97.8 36 TCGCACCCTGTATGGGTGCGTGGATTGAAAT # Left flank : TAATCATCTATTCTGTCACCTATCTGCTAATCAAGACAAGAACCTTTGCGAAAGTATTCAGTATTCTATTCGTATTGGCCATCGTTTTAGGTGTATTAACAAGTACATTTATCGCGCTCATTCACAATTCTTGGATCTTCATCCTAAATAATCTGGTGCTCGCAACTGGATTCTATACAATCATTTATTTTTTGGGTAAATTCTTTACACCTGCTATGGCCCATGAGCAAAATTGAAATTGCTTTTAGAGTTGAATACTGACTTAACGATTCATCTCAATACAAGTCGTCGAACCGTGTCGAACTTCGTTATATTAGCAGTAAAAGTCAGGTGCGAACCCGAAGCGAACATAAAAACCCTGGTAGACCCGCACCAATATTCACACCAATTATGTGAAAATATGTAATCCCCGTATGTTTAAATACCCTTTAAAGTGTTAATGAGTAATTATTAGAAGAAGAAATAAGCGAATATAGGTCAGAAGACCATTTATTTCGCAG # Right flank : TAACGACGGTGATGCAATCGAGCAAACGTTATCGGCAAAGTATACCGGGGTTGAGGAATAAGAAAACCGACGTGCACTGGCACGTCGGCTTTCTTATTCAACGATTGTCCCTTCGCGGTATTGGTCTCGCAATACGTATTTCTGTACTTTCCTGATGGGGTGCGGGGCAATGCGTCGACGAAGATGATTTCTCTTGGTTTTTTGAAACGGGCAAGCTGGGCGGTACACAAGTCAAGGATGTCTTCTTTTTGTAATGGGGCGCTTTTGCTAGGAACGATGACGGCGCAAACGGCCTCAATAAACTTCTTATCGGGGATGCCGATAATGGCGACGTCTTTTACTCCTTCATGACGGATGATGACGTCTTCGATCTCTTTCGCATAGATGTTCTCACCACCGCTTCGAATCATGTCTTTTTTACGGCCGGCAATTTCTAGGTATCCGGCTGCATCAAAGATGCCGAGGTCGCCGGTTTTGCACCAGCCGTCGGCAAAGGTGGC # Questionable array : NO Score: 8.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCTGTATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 73887-74053 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWZ01000014.1 Geomicrobium sp. JCM 19037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 73887 32 100.0 37 ................................ AAAGATCATATTGCCTTTATATGTAATCATGTTGACA 73956 32 100.0 34 ................................ GCTGTAAGTGTCCTCATCAATGACGACTGTCGCA 74022 32 93.8 0 ........C......................A | ========== ====== ====== ====== ================================ ===================================== ================== 3 32 97.9 36 GTCGCACCTTGTATGGGTGCGTGGATTGAAAT # Left flank : ATAAAAAAAAGACCCTTTTCGTCTGAAAAAAAGTCTTGAATGGCAATGTGCACAATTTCACGACTTATCTTTCAGAATTGTTGCATTCTGCTGGACTTGGCACCTTCCTCAATGGAGGTTGCCGGACGTCATCGGGCCATTCCCTCGGTCACTCTCGATAAGCAAAATATGAAGTTAGTAGTAGCTATCGTAATACTTTAAAGCGATAATGTCAACAGAAAATACTAACTTTTCTGATCGGAATTGAAGCATGATTTTTATTGCAGGAAGCGGATGAACGATGTCGAATCTTCTTACATAAGCTCCCTCAAATAGGCTATGCACATCCGGGTGCGAACCCGAAGCGAACATAAAAACCCTGGGTGACCCGCACCAAAAATCGGGTCAATTTTGTGAAAGTATGTAATGATTGCTAGTTTATACCCCCATTAATGTGCGAAAAAAGTAGTTGTTAGAAGAAAGAATAAGCGGATATTGGTCAAAAGACCCTTAATTTCGCA # Right flank : AATATAGAAGGATGGGGTTGTTTATCCCTAGTAGTCCTGACAGCTCTCGCTCGTCAGGAAAACGAAACAAGGCCGCCACTATATTGAATTGGGGGCCTTGTTTCATGTTTGTTTAATTGTCGGGCGTGTATCCGTACACTGGCAGTGTAATGCTTGCGGTTTCTTCGATTTCTTCAAAGCTGATGTCAAATGTGACGTGTTCAGTGTCTCCTGTTTCGTGAACAATCAATCCTTCTTCTAAGTCGTATTCGGCACTTTCTGGATGACTTGATGTGACTTCTTTAATCGTGATTGATTCAAATACTTCAGTCGGTACGGATTCATAGAAGTAGTTTTGACCTCTGAACACCAATTGTGCACCGGTGTGATCCAGTCGTACAAATCTTGACATGAAGTTGCCATCTAGTTCAAATAACGGACTGATGTGGACAGGTACGTTCGGGTCAATGACGAGCACTTCTTGCGAATCGGACGTTATTTCTGTACCTTCTTCATCACGA # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTGTACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //