Array 1 84291-85521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVR010000002.1 Escherichia coli strain YC94-2 NODE_2_length_297955_cov_39.543129, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84291 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 84352 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 84413 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 84474 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 84535 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 84596 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 84657 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 84718 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 84779 29 93.1 32 ...................A........T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 84840 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 84901 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [84925] Deletion [84942] 84943 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 85004 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 85065 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 85126 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 85187 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 85248 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 85309 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 85371 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 85432 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 85493 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111071-112258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVR010000002.1 Escherichia coli strain YC94-2 NODE_2_length_297955_cov_39.543129, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111071 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 111132 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 111193 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 111254 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 111315 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 111376 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 111437 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 111498 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 111559 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 111620 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 111681 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 111742 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 111803 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 111864 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 111925 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 111986 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 112047 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 112108 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 112169 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 112230 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //